Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G144000 Manihot esculenta HOM05D004151 ORTHO05D004775 2.3e-68 262.7 168 100.0
Manes.09G141400 Manihot esculenta HOM05D004151 ORTHO05D004775 5.2e-65 251.5 168 96.4
Duzib106G1401 Durio zibethinus HOM05D004151 ORTHO05D004775 1.8e-57 226.5 169 89.3
Sabra13G0051900 Salix brachista HOM05D004151 ORTHO05D004775 1.8e-57 226.5 153 86.9
Thecc.05G294500 Theobroma cacao HOM05D004151 ORTHO05D004775 2.3e-57 226.1 169 91.1
TWI32G1207 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 3.1e-57 225.7 173 88.4
Potri.019G034900 Populus trichocarpa HOM05D004151 ORTHO05D004775 5.2e-57 224.9 155 87.1
Ah.06g191800 Amaranthus hybridus HOM05D004151 ORTHO05D004775 1.5e-56 223.4 171 86.0
GSVIVG01033401001 Vitis vinifera HOM05D004151 ORTHO05D004775 1.5e-56 223.4 170 82.4
CsaV3_4G013280 Cucumis sativus L. HOM05D004151 ORTHO05D004775 2.0e-56 223.0 168 83.3
SGA_v2.0_scaffold274G46513 Striga asiatica HOM05D004151 ORTHO05D004775 2.0e-56 223.0 160 84.4
THA.LOC104827273 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 2.0e-56 223.0 169 88.8
Cc06_g22960 Coffea canephora HOM05D004151 ORTHO05D004775 3.4e-56 222.2 152 84.2
Sed0025621 Sechium edule HOM05D004151 ORTHO05D004775 5.8e-56 221.5 169 78.7
Lalb_Chr14g0364491 Lupinus albus HOM05D004151 ORTHO05D004775 7.5e-56 221.1 168 81.5
CiPaw.09G001900 Carya illinoinensis HOM05D004151 ORTHO05D004775 1.3e-55 220.3 171 85.4
Glyma.16G041400 Glycine max HOM05D004151 ORTHO05D004775 1.3e-55 220.3 150 84.7
Potri.013G058400 Populus trichocarpa HOM05D004151 ORTHO05D004775 2.2e-55 219.5 155 82.6
MELO3C008801.2 Cucumis melo HOM05D004151 ORTHO05D004775 3.7e-55 218.8 169 87.6
Gorai.004G244500 Gossypium raimondii HOM05D004151 ORTHO05D004775 6.4e-55 218.0 169 88.2
Nitab4.5_0007542g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 8.3e-55 217.6 150 80.0
Nitab4.5_0009048g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 8.3e-55 217.6 172 82.6
PGR142G1491 Punica granatum HOM05D004151 ORTHO05D004775 8.3e-55 217.6 169 90.5
HPP92_021240 Vanilla planifolia HOM05D004151 ORTHO05D004775 8.3e-55 217.6 149 85.2
TAR369G0512 Trochodendron aralioides HOM05D004151 ORTHO05D004775 1.1e-54 217.2 177 84.2
ClCG04G005310 Citrullus lanatus HOM05D004151 ORTHO05D004775 1.4e-54 216.9 173 86.7
FvH4_1g30320 Fragaria vesca HOM05D004151 ORTHO05D004775 2.4e-54 216.1 148 85.8
Gohir.A08G213200 Gossypium hirsutum HOM05D004151 ORTHO05D004775 2.4e-54 216.1 168 88.1
Gohir.D08G230300 Gossypium hirsutum HOM05D004151 ORTHO05D004775 2.4e-54 216.1 169 87.6
Nn7g35851 Nelumbo nucifera HOM05D004151 ORTHO05D004775 3.2e-54 215.7 142 91.5
Peaxi162Scf00003g04832 Petunia axillaris HOM05D004151 ORTHO05D004775 7.0e-54 214.5 150 75.3
Solyc10g078540.3 Solanum lycopersicum HOM05D004151 ORTHO05D004775 7.0e-54 214.5 150 82.7
Sopen10g029190 Solanum pennellii HOM05D004151 ORTHO05D004775 7.0e-54 214.5 150 82.7
THA.LOC104802867 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 7.0e-54 214.5 149 86.6
Ah.13g075350 Amaranthus hybridus HOM05D004151 ORTHO05D004775 9.2e-54 214.2 153 85.0
Lalb_Chr22g0359191 Lupinus albus HOM05D004151 ORTHO05D004775 1.2e-53 213.8 176 77.8
Duzib177G0709 Durio zibethinus HOM05D004151 ORTHO05D004775 1.6e-53 213.4 171 87.1
Lj1g0021266 Lotus japonicus HOM05D004151 ORTHO05D004775 2.0e-53 213.0 177 79.1
PGSC0003DMG400008366 Solanum tuberosum HOM05D004151 ORTHO05D004775 2.0e-53 213.0 150 80.7
TPR.G5895 Trifolium pratense HOM05D004151 ORTHO05D004775 2.0e-53 213.0 151 84.8
RcHm_v2.0_Chr3g0490211 Rosa chinensis HOM05D004151 ORTHO05D004775 2.7e-53 212.6 148 86.5
Sed0023399 Sechium edule HOM05D004151 ORTHO05D004775 2.7e-53 212.6 151 87.4
FAN19G1796 Fragaria x ananassa HOM05D004151 ORTHO05D004775 3.5e-53 212.2 147 86.4
FAN26G2823 Fragaria x ananassa HOM05D004151 ORTHO05D004775 3.5e-53 212.2 147 86.4
MD05G1045500 Malus domestica HOM05D004151 ORTHO05D004775 4.6e-53 211.8 150 80.0
Gohir.D11G310400 Gossypium hirsutum HOM05D004151 ORTHO05D004775 6.0e-53 211.5 170 87.1
Gorai.007G343400 Gossypium raimondii HOM05D004151 ORTHO05D004775 6.0e-53 211.5 170 87.1
Psat0s1971g0280 Pisum sativum HOM05D004151 ORTHO05D004775 6.0e-53 211.5 146 87.0
Gohir.A11G296500 Gossypium hirsutum HOM05D004151 ORTHO05D004775 7.8e-53 211.1 142 88.7
Sc25g0004980 Simmondsia chinensis HOM05D004151 ORTHO05D004775 7.8e-53 211.1 168 79.8
Migut.J01888 Erythranthe guttata HOM05D004151 ORTHO05D004775 1.0e-52 210.7 149 86.6
VMungo1383G2477 Vigna mungo HOM05D004151 ORTHO05D004775 1.0e-52 210.7 149 85.9
FAN23G0170 Fragaria x ananassa HOM05D004151 ORTHO05D004775 1.7e-52 209.9 147 85.7
QL07p019530 Quercus lobata HOM05D004151 ORTHO05D004775 1.7e-52 209.9 176 83.5
MSTRG.19934 Avicennia marina HOM05D004151 ORTHO05D004775 2.3e-52 209.5 148 84.5
Oeu059999.1 Olea europaea HOM05D004151 ORTHO05D004775 2.3e-52 209.5 174 74.1
Sp6g26140 Schrenkiella parvula HOM05D004151 ORTHO05D004775 2.3e-52 209.5 150 82.7
CARHR078040 Cardamine hirsuta HOM05D004151 ORTHO05D004775 3.0e-52 209.1 172 68.6
COL.COLO4_13597 Corchorus olitorius HOM05D004151 ORTHO05D004775 3.0e-52 209.1 142 89.4
FAN28G2413 Fragaria x ananassa HOM05D004151 ORTHO05D004775 3.0e-52 209.1 138 87.7
Hma1.2p1_0134F.1_g061640 Hydrangea macrophylla HOM05D004151 ORTHO05D004775 3.0e-52 209.1 158 81.0
Dinv37014 Davidia involucrata HOM05D004151 ORTHO05D004775 3.9e-52 208.8 169 79.9
Atru.chr5.2062 Acer truncatum HOM05D004151 ORTHO05D004775 5.0e-52 208.4 170 79.4
MD00G1189600 Malus domestica HOM05D004151 ORTHO05D004775 5.0e-52 208.4 150 76.0
Hund24835 Selenicereus undatus HOM05D004151 ORTHO05D004775 6.6e-52 208.0 173 85.0
TWI34G0161 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 6.6e-52 208.0 182 80.2
Sabra19G0042500 Salix brachista HOM05D004151 ORTHO05D004775 1.1e-51 207.2 138 90.6
Sabra19G0044800 Salix brachista HOM05D004151 ORTHO05D004775 1.1e-51 207.2 138 90.6
Aa31LG11G11430 Aethionema arabicum HOM05D004151 ORTHO05D004775 1.9e-51 206.5 171 83.0
Cfa016441 Carpinus fangiana HOM05D004151 ORTHO05D004775 1.9e-51 206.5 172 75.0
PSO063G0165 Papaver somniferum HOM05D004151 ORTHO05D004775 1.9e-51 206.5 151 84.1
CARHR194880 Cardamine hirsuta HOM05D004151 ORTHO05D004775 2.5e-51 206.1 151 82.8
CDE06G0359 Ceratophyllum demersum HOM05D004151 ORTHO05D004775 2.5e-51 206.1 148 80.4
Phvul.001G110400 Phaseolus vulgaris HOM05D004151 ORTHO05D004775 2.5e-51 206.1 155 79.4
SalBow5G4201 Salvia bowleyana HOM05D004151 ORTHO05D004775 2.5e-51 206.1 140 84.3
SEGI_32651 Sequoiadendron giganteum HOM05D004151 ORTHO05D004775 2.5e-51 206.1 147 78.2
arahy.Tifrunner.gnm1.ann1.JDMG7B Arachis hypogaea HOM05D004151 ORTHO05D004775 3.3e-51 205.7 168 83.3
arahy.Tifrunner.gnm1.ann1.PLSY77 Arachis hypogaea HOM05D004151 ORTHO05D004775 3.3e-51 205.7 168 83.3
BolC1t05799H Brassica oleracea HOM05D004151 ORTHO05D004775 3.3e-51 205.7 154 78.6
CANSAT78G0749 Cannabis sativa HOM05D004151 ORTHO05D004775 4.3e-51 205.3 180 77.8
Thhalv10014755m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 4.3e-51 205.3 143 77.6
Glyma.19G110900 Glycine max HOM05D004151 ORTHO05D004775 4.3e-51 205.3 185 76.8
Os11g0579800 Oryza sativa ssp. japonica HOM05D004151 ORTHO05D004775 4.3e-51 205.3 153 77.8
PSO782G4796 Papaver somniferum HOM05D004151 ORTHO05D004775 4.3e-51 205.3 147 81.0
EL10Ac3g06820 Beta vulgaris HOM05D004151 ORTHO05D004775 5.6e-51 204.9 150 83.3
A01p41270 Brassica napus HOM05D004151 ORTHO05D004775 5.6e-51 204.9 146 82.2
BNapus_Darmor_BZH_scaffold_78p00440 Brassica napus HOM05D004151 ORTHO05D004775 5.6e-51 204.9 146 82.2
Atru.chr5.2060 Acer truncatum HOM05D004151 ORTHO05D004775 7.3e-51 204.5 170 78.8
Aqoxy1G00486 Aquilegia oxysepala HOM05D004151 ORTHO05D004775 7.3e-51 204.5 172 83.1
Haze_19418 Corylus avellana HOM05D004151 ORTHO05D004775 7.3e-51 204.5 151 78.1
Haze_19447 Corylus avellana HOM05D004151 ORTHO05D004775 7.3e-51 204.5 151 78.1
BraA01t04550Z Brassica rapa HOM05D004151 ORTHO05D004775 9.5e-51 204.1 146 82.2
Sp3g02890 Schrenkiella parvula HOM05D004151 ORTHO05D004775 9.5e-51 204.1 151 80.8
unitig_21.g20195 Utricularia gibba HOM05D004151 ORTHO05D004775 9.5e-51 204.1 147 78.9
BcaNung05745 Brassica carinata HOM05D004151 ORTHO05D004775 1.6e-50 203.4 148 80.4
Prupe.8G064800 Prunus persica HOM05D004151 ORTHO05D004775 1.6e-50 203.4 149 84.6
Medtr7g085640 Medicago truncatula HOM05D004151 ORTHO05D004775 2.1e-50 203.0 179 78.8
AUR62032690 Chenopodium quinoa HOM05D004151 ORTHO05D004775 2.8e-50 202.6 145 84.8
Zm00001eb200450 Zea mays HOM05D004151 ORTHO05D004775 6.2e-50 201.4 146 83.6
AT3G03920 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 8.1e-50 201.1 158 81.0
A02p04770 Brassica napus HOM05D004151 ORTHO05D004775 1.1e-49 200.7 143 80.4
AL3G13810 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 1.4e-49 200.3 158 81.0
BcaC03g13582 Brassica carinata HOM05D004151 ORTHO05D004775 1.4e-49 200.3 150 80.0
BolC2t06882H Brassica oleracea HOM05D004151 ORTHO05D004775 1.4e-49 200.3 150 80.0
Thhalv10021561m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 1.4e-49 200.3 152 79.6
A03p08690 Brassica napus HOM05D004151 ORTHO05D004775 2.3e-49 199.5 157 79.0
Dinv14579 Davidia involucrata HOM05D004151 ORTHO05D004775 3.1e-49 199.1 172 80.2
Oeu049600.1 Olea europaea HOM05D004151 ORTHO05D004775 3.1e-49 199.1 170 81.8
PSO384G0229 Papaver somniferum HOM05D004151 ORTHO05D004775 3.1e-49 199.1 149 83.2
Aa31LG5G14500 Aethionema arabicum HOM05D004151 ORTHO05D004775 4.0e-49 198.7 131 84.0
BolC3t13499H Brassica oleracea HOM05D004151 ORTHO05D004775 5.2e-49 198.4 149 81.9
Lsat_1_v5_gn_8_24760 Lactuca sativa HOM05D004151 ORTHO05D004775 5.2e-49 198.4 177 79.7
BcaNung05743 Brassica carinata HOM05D004151 ORTHO05D004775 8.9e-49 197.6 147 78.9
Carub.0006s1646 Capsella rubella HOM05D004151 ORTHO05D004775 8.9e-49 197.6 148 79.7
PSO339G5713 Papaver somniferum HOM05D004151 ORTHO05D004775 1.5e-48 196.8 143 83.9
C02p09730 Brassica napus HOM05D004151 ORTHO05D004775 2.6e-48 196.1 150 78.7
Carub.0003s0316 Capsella rubella HOM05D004151 ORTHO05D004775 3.4e-48 195.7 148 81.1
BcaB01g05179 Brassica carinata HOM05D004151 ORTHO05D004775 4.4e-48 195.3 149 81.2
C03p10140 Brassica napus HOM05D004151 ORTHO05D004775 4.4e-48 195.3 149 81.2
BraA03t10192Z Brassica rapa HOM05D004151 ORTHO05D004775 4.4e-48 195.3 149 81.2
HanXRQChr08g0216931 Helianthus annuus HOM05D004151 ORTHO05D004775 4.4e-48 195.3 147 79.6
AL6G29380 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 5.8e-48 194.9 150 74.7
CSS0045523 Camellia sinensis var. sinensis HOM05D004151 ORTHO05D004775 5.8e-48 194.9 178 77.5
AT5G18180 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 9.9e-48 194.1 149 74.5
Lsat_1_v5_gn_8_145841 Lactuca sativa HOM05D004151 ORTHO05D004775 9.9e-48 194.1 147 82.3
HanXRQChr07g0204461 Helianthus annuus HOM05D004151 ORTHO05D004775 2.2e-47 193.0 143 81.8
Zm00001eb114360 Zea mays HOM05D004151 ORTHO05D004775 2.2e-47 193.0 184 67.9
ATR0697G007 Amborella trichopoda HOM05D004151 ORTHO05D004775 2.9e-47 192.6 140 84.3
BraA02t05436Z Brassica rapa HOM05D004151 ORTHO05D004775 3.7e-47 192.2 144 78.5
BcaB05g23300 Brassica carinata HOM05D004151 ORTHO05D004775 4.9e-47 191.8 144 81.2
vmacro09141 Vaccinium macrocarpon HOM05D004151 ORTHO05D004775 6.4e-47 191.4 155 76.1
ECA233G5487 Erigeron canadensis HOM05D004151 ORTHO05D004775 1.9e-46 189.9 156 73.7
Actinidia22083 Actinidia chinensis HOM05D004151 ORTHO05D004775 2.4e-46 189.5 168 82.1
Pp3c25_15020 Physcomitrium patens HOM05D004151 ORTHO05D004775 3.2e-46 189.1 152 74.3
Mapoly0086s0024 Marchantia polymorpha HOM05D004151 ORTHO05D004775 5.4e-46 188.3 147 78.2
Pp3c5_28430 Physcomitrium patens HOM05D004151 ORTHO05D004775 5.4e-46 188.3 152 71.7
Peaxi162Scf00076g01048 Petunia axillaris HOM05D004151 ORTHO05D004775 9.2e-46 187.6 150 76.7
AagrBONN_evm.TU.Sc2ySwM_362.2901 Anthoceros agrestis HOM05D004151 ORTHO05D004775 4.6e-45 185.3 150 71.3
Rhsim04G0087500 Rhododendron simsii HOM05D004151 ORTHO05D004775 7.8e-45 184.5 148 75.0
Cpa.g.sc51.114 Carica papaya HOM05D004151 ORTHO05D004775 3.0e-44 182.6 91 93.4
COL.COLO4_13598 Corchorus olitorius HOM05D004151 ORTHO05D004775 3.0e-44 182.6 148 77.0
CBR_g48747 Chara braunii HOM05D004151 ORTHO05D004775 3.9e-44 182.2 104 78.8
Cre13.g567850 Chlamydomonas reinhardtii HOM05D004151 ORTHO05D004775 5.6e-43 178.3 154 72.7
CAN.G960.49 Capsicum annuum HOM05D004151 ORTHO05D004775 7.3e-43 177.9 94 89.4
Ca_08267_v3 Cicer arietinum L. HOM05D004151 ORTHO05D004775 1.2e-42 177.2 89 93.3
Hund19236 Selenicereus undatus HOM05D004151 ORTHO05D004775 4.7e-42 175.3 95 86.3
Nitab4.5_0002769g0090 Nicotiana tabacum HOM05D004151 ORTHO05D004775 6.2e-42 174.9 150 72.7
Nitab4.5_0004844g0050 Nicotiana tabacum HOM05D004151 ORTHO05D004775 1.5e-40 170.2 89 88.8
MBI11_g31283_MAGBIO Magnolia biondii HOM05D004151 ORTHO05D004775 1.2e-37 160.6 81 88.9
SMO347G0554 Selaginella moellendorffii HOM05D004151 ORTHO05D004775 3.9e-36 155.6 169 72.2
MCO13G219 Micromonas commoda HOM05D004151 ORTHO05D004775 6.6e-36 154.8 94 71.3
BolC2t11912H Brassica oleracea HOM05D004151 ORTHO05D004775 8.1e-34 147.9 128 62.5
C09p58800 Brassica napus HOM05D004151 ORTHO05D004775 8.4e-31 137.9 80 76.2
BraA10t42874Z Brassica rapa HOM05D004151 ORTHO05D004775 4.6e-29 132.1 101 68.3
unitig_744.g24550 Utricularia gibba HOM05D004151 ORTHO05D004775 1.9e-27 126.7 60 96.7
PRCOL_00005119 Prasinoderma coloniale HOM05D005848 ORTHO05D007532 4.3e-27 125.6 107 57.0
C02p58510 Brassica napus HOM05D004151 ORTHO05D004775 2.6e-24 116.3 94 61.7
Actinidia30553 Actinidia chinensis HOM05D004151 ORTHO05D004775 2.9e-23 112.8 86 86.0
Haze_27090 Corylus avellana HOM05D000590 ORTHO05D004775 6.7e-20 101.7 94 47.9
HanXRQChr05g0143841 Helianthus annuus HOM05D004151 ORTHO05D004775 8.7e-20 101.3 163 53.4
Oeu035726.1 Olea europaea HOM05D004151 ORTHO05D004775 5.6e-19 98.6 104 53.8
Zm00001eb274230 Zea mays HOM05D004151 ORTHO05D004775 9.6e-19 97.8 49 85.7
Oeu035720.1 Olea europaea HOM05D004151 ORTHO05D004775 2.1e-18 96.7 104 52.9
Atru.chr10.1764 Acer truncatum HOM05D004151 ORTHO05D004775 5.1e-12 75.5 77 57.1
Atru.chr5.2304 Acer truncatum HOM05D004151 ORTHO05D004775 5.1e-12 75.5 77 57.1
Atru.chr6.7 Acer truncatum HOM05D004151 ORTHO05D004775 1.1e-11 74.3 77 55.8
BcaB08g36698 Brassica carinata HOM05D004151 ORTHO05D004775 2.5e-11 73.2 41 85.4
Atru.chr13.534 Acer truncatum HOM05D004151 ORTHO05D004775 4.3e-11 72.4 77 55.8
Atru.chr2.3197 Acer truncatum HOM05D004151 ORTHO05D004775 4.3e-11 72.4 77 55.8
Atru.chr4.2011 Acer truncatum HOM05D004151 ORTHO05D004775 4.3e-11 72.4 77 55.8
BolC9t58722H Brassica oleracea HOM05D004151 ORTHO05D004775 1.4e-09 67.4 143 49.7
ECA246G0128 Erigeron canadensis HOM05D001659 ORTHO05D001659 1.1e-06 57.8 35 71.4


User provided reference genes

Program Settings