Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G130000 Manihot esculenta HOM05D005564 ORTHO05D006872 5.0e-165 584.3 290 100.0
Potri.015G111628 Populus trichocarpa HOM05D005564 ORTHO05D006872 1.0e-117 427.2 291 73.2
Duzib084G1177 Durio zibethinus HOM05D005564 ORTHO05D006872 3.3e-116 422.2 292 73.3
Sabra15G0133100 Salix brachista HOM05D005564 ORTHO05D006872 5.6e-116 421.4 291 71.8
Cfa013601 Carpinus fangiana HOM05D005564 ORTHO05D006872 1.6e-115 419.9 293 73.4
Thecc.03G145600 Theobroma cacao HOM05D005564 ORTHO05D006872 1.4e-111 406.8 290 70.3
Gohir.A13G032000 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.9e-111 406.4 292 70.9
Gohir.D07G048900 Gossypium hirsutum HOM05D005564 ORTHO05D006872 7.1e-111 404.4 292 71.2
Gorai.001G052100 Gossypium raimondii HOM05D005564 ORTHO05D006872 9.3e-111 404.1 292 70.9
CSS0008072 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 1.6e-110 403.3 292 69.2
FvH4_7g26720 Fragaria vesca HOM05D005564 ORTHO05D006872 1.0e-109 400.6 292 67.5
Gorai.007G289400 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.5e-108 396.7 291 70.1
CANSAT56G0249 Cannabis sativa HOM05D005564 ORTHO05D006872 4.3e-108 395.2 290 68.3
Gorai.005G129900 Gossypium raimondii HOM05D005564 ORTHO05D006872 4.3e-108 395.2 292 70.2
GSVIVG01024470001 Vitis vinifera HOM05D005564 ORTHO05D006872 7.4e-108 394.4 291 67.0
TWI39G1038 Tripterygium wilfordii HOM05D005564 ORTHO05D006872 9.6e-108 394.0 291 70.1
Cpa.g.sc13.231 Carica papaya HOM05D005564 ORTHO05D006872 2.8e-107 392.5 296 67.6
Prupe.2G270700 Prunus persica HOM05D005564 ORTHO05D006872 8.2e-107 391.0 288 64.6
THA.LOC104825050 Tarenaya hassleriana HOM05D005564 ORTHO05D006872 1.1e-106 390.6 291 68.4
CiPaw.07G183300 Carya illinoinensis HOM05D005564 ORTHO05D006872 6.9e-106 387.9 235 78.7
QL09p027441 Quercus lobata HOM05D005564 ORTHO05D006872 5.9e-105 384.8 290 68.6
Atru.chr6.1979 Acer truncatum HOM05D005564 ORTHO05D006872 2.9e-104 382.5 296 65.9
Atru.chr6.2007 Acer truncatum HOM05D005564 ORTHO05D006872 2.9e-104 382.5 296 65.9
MD07G1241800 Malus domestica HOM05D005564 ORTHO05D006872 2.9e-104 382.5 291 64.6
Carub.0008s1121 Capsella rubella HOM05D005564 ORTHO05D006872 5.0e-104 381.7 295 65.8
HanXRQChr08g0221891 Helianthus annuus HOM05D005564 ORTHO05D006872 5.0e-104 381.7 286 66.4
Glyma.01G079300 Glycine max HOM05D005564 ORTHO05D006872 6.5e-104 381.3 290 66.9
TAR629G2772 Trochodendron aralioides HOM05D005564 ORTHO05D006872 6.5e-104 381.3 293 66.6
Hma1.2p1_1014F.1_g247960 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 1.4e-103 380.2 293 66.2
Hma1.2p1_1305F.1_g274526 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 1.4e-103 380.2 293 66.2
Haze_22223 Corylus avellana HOM05D005564 ORTHO05D006872 1.9e-103 379.8 279 70.3
Migut.F00541 Erythranthe guttata HOM05D005564 ORTHO05D006872 1.9e-103 379.8 295 65.4
AL8G25430 Arabidopsis lyrata HOM05D005564 ORTHO05D006872 3.2e-103 379.0 295 66.4
Dinv34536 Davidia involucrata HOM05D005564 ORTHO05D006872 3.2e-103 379.0 279 69.5
TPR.G39148 Trifolium pratense HOM05D005564 ORTHO05D006872 3.2e-103 379.0 303 63.4
Lalb_Chr19g0127411 Lupinus albus HOM05D005564 ORTHO05D006872 7.2e-103 377.9 290 64.8
HanXRQChr08g0223121 Helianthus annuus HOM05D005564 ORTHO05D006872 9.3e-103 377.5 286 65.7
AT5G51170 Arabidopsis thaliana HOM05D005564 ORTHO05D006872 1.2e-102 377.1 291 66.0
MD07G1243700 Malus domestica HOM05D005564 ORTHO05D006872 1.2e-102 377.1 291 63.6
Sp6g13380 Schrenkiella parvula HOM05D005564 ORTHO05D006872 2.1e-102 376.3 292 66.1
Aa31LG3G7670 Aethionema arabicum HOM05D005564 ORTHO05D006872 2.7e-102 375.9 295 64.4
Nitab4.5_0003973g0040 Nicotiana tabacum HOM05D005564 ORTHO05D006872 7.9e-102 374.4 292 64.7
Thhalv10014247m.g Eutrema salsugineum HOM05D005564 ORTHO05D006872 1.8e-101 373.2 297 64.3
arahy.Tifrunner.gnm1.ann1.2T0BFY Arachis hypogaea HOM05D005564 ORTHO05D006872 3.9e-101 372.1 290 64.1
Phvul.008G143300 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 5.1e-101 371.7 290 64.5
CARHR256880 Cardamine hirsuta HOM05D005564 ORTHO05D006872 1.1e-100 370.5 295 64.1
Ciclev10032148m.g Citrus clementina HOM05D005564 ORTHO05D006872 1.1e-100 370.5 321 60.1
COL.COLO4_37310 Corchorus olitorius HOM05D005564 ORTHO05D006872 1.5e-100 370.2 252 72.6
VMungo1383G3643 Vigna mungo HOM05D005564 ORTHO05D006872 1.9e-100 369.8 290 65.5
BraSC35t46004Z Brassica rapa HOM05D005564 ORTHO05D006872 4.3e-100 368.6 294 63.3
Medtr0053s0020 Medicago truncatula HOM05D005564 ORTHO05D006872 4.3e-100 368.6 303 62.4
A10p07960 Brassica napus HOM05D005564 ORTHO05D006872 9.7e-100 367.5 294 62.9
C09p39850 Brassica napus HOM05D005564 ORTHO05D006872 1.3e-99 367.1 293 63.8
Lj1g0017373 Lotus japonicus HOM05D005564 ORTHO05D006872 1.3e-99 367.1 289 64.7
CsaV3_5G005020 Cucumis sativus L. HOM05D005564 ORTHO05D006872 1.6e-99 366.7 291 62.5
SalBow3G4594 Salvia bowleyana HOM05D005564 ORTHO05D006872 2.2e-99 366.3 285 63.5
BcaC04g20726 Brassica carinata HOM05D005564 ORTHO05D006872 2.8e-99 365.9 293 63.5
BolC9t56884H Brassica oleracea HOM05D005564 ORTHO05D006872 2.8e-99 365.9 293 63.5
vmacro19959 Vaccinium macrocarpon HOM05D005564 ORTHO05D006872 2.8e-99 365.9 290 63.8
BcaB08g35471 Brassica carinata HOM05D005564 ORTHO05D006872 3.7e-99 365.5 295 63.4
SGA_v2.0_scaffold60G20845 Striga asiatica HOM05D005564 ORTHO05D006872 1.8e-98 363.2 293 62.8
EL10Ac7g17720 Beta vulgaris HOM05D005564 ORTHO05D006872 4.1e-98 362.1 348 55.7
Oeu030874.1 Olea europaea HOM05D005564 ORTHO05D006872 9.0e-98 360.9 292 62.0
PSO063G5398 Papaver somniferum HOM05D005564 ORTHO05D006872 1.2e-97 360.5 288 61.1
Eucgr.A02932 Eucalyptus grandis HOM05D005564 ORTHO05D006872 1.5e-97 360.1 291 62.9
Phvul.005G030000 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 4.5e-97 358.6 290 64.8
Nn6g33765 Nelumbo nucifera HOM05D005564 ORTHO05D006872 7.7e-97 357.8 288 64.6
Ah.08g213710 Amaranthus hybridus HOM05D005564 ORTHO05D006872 3.8e-96 355.5 292 62.0
FAN06G0976 Fragaria x ananassa HOM05D005564 ORTHO05D006872 5.0e-96 355.1 274 63.9
Sopen03g024760 Solanum pennellii HOM05D005564 ORTHO05D006872 1.1e-95 354.0 292 63.0
MSTRG.27230 Avicennia marina HOM05D005564 ORTHO05D006872 2.5e-95 352.8 293 62.1
Ca_27086_v3 Cicer arietinum L. HOM05D005564 ORTHO05D006872 3.2e-95 352.4 278 64.4
FAN03G1301 Fragaria x ananassa HOM05D005564 ORTHO05D006872 4.2e-95 352.1 274 63.9
ClCG01G004820 Citrullus lanatus HOM05D005564 ORTHO05D006872 5.5e-95 351.7 296 60.8
Gohir.A07G044400 Gossypium hirsutum HOM05D005564 ORTHO05D006872 4.6e-94 348.6 260 66.9
DCAR_020165 Daucus carota HOM05D005564 ORTHO05D006872 6.1e-94 348.2 288 63.9
Solyc03g093880.3 Solanum lycopersicum HOM05D005564 ORTHO05D006872 7.9e-94 347.8 292 62.0
PGSC0003DMG400008328 Solanum tuberosum HOM05D005564 ORTHO05D006872 7.9e-94 347.8 292 61.6
Hund18321 Selenicereus undatus HOM05D005564 ORTHO05D006872 1.0e-93 347.4 279 63.1
Lj8A49G34 Lonicera japonica HOM05D005564 ORTHO05D006872 1.4e-93 347.1 304 61.2
CSS0031726 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 1.8e-93 346.7 254 66.9
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 3.9e-93 345.5 277 63.5
Gorai.013G121700 Gossypium raimondii HOM05D005564 ORTHO05D006872 8.8e-93 344.4 253 70.4
PGR042G2925 Punica granatum HOM05D005564 ORTHO05D006872 8.8e-93 344.4 295 61.4
Sed0010204 Sechium edule HOM05D005564 ORTHO05D006872 1.5e-92 343.6 224 71.0
VMungo1080G0069 Vigna mungo HOM05D005564 ORTHO05D006872 2.0e-92 343.2 331 57.7
ECA233G5472 Erigeron canadensis HOM05D005564 ORTHO05D006872 3.3e-92 342.4 265 66.8
CAN.G309.23 Capsicum annuum HOM05D005564 ORTHO05D006872 4.4e-92 342.0 293 61.1
Cc00_g13030 Coffea canephora HOM05D005564 ORTHO05D006872 7.4e-92 341.3 293 59.4
MD01G1175500 Malus domestica HOM05D005564 ORTHO05D006872 6.3e-91 338.2 320 54.1
PSO017G2767 Papaver somniferum HOM05D005564 ORTHO05D006872 2.4e-90 336.3 232 66.8
PSO782G4004 Papaver somniferum HOM05D005564 ORTHO05D006872 4.1e-90 335.5 288 59.0
Peaxi162Scf00073g01727 Petunia axillaris HOM05D005564 ORTHO05D006872 1.2e-89 334.0 292 59.6
ClCG09G010750 Citrullus lanatus HOM05D005564 ORTHO05D006872 2.0e-89 333.2 282 59.6
MD07G1244900 Malus domestica HOM05D005564 ORTHO05D006872 7.2e-87 324.7 206 72.3
CDE02G1506 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 2.1e-86 323.2 292 55.1
RcHm_v2.0_Chr1g0373311 Rosa chinensis HOM05D005564 ORTHO05D006872 1.1e-84 317.4 225 68.9
SHI14145 Sapria himalayana HOM05D005564 ORTHO05D000001 4.4e-84 315.5 274 60.6
Zm00001eb249040 Zea mays HOM05D005564 ORTHO05D006872 5.3e-82 308.5 293 54.9
FAN10G0633 Fragaria x ananassa HOM05D005564 ORTHO05D006872 5.0e-80 302.0 226 66.4
AUR62008825 Chenopodium quinoa HOM05D005564 ORTHO05D006872 1.9e-79 300.1 207 68.1
MELO3C005454.2 Cucumis melo HOM05D005564 ORTHO05D006872 4.2e-79 298.9 225 64.4
AUR62025416 Chenopodium quinoa HOM05D005564 ORTHO05D006872 2.7e-78 296.2 212 67.0
Rhsim03G0157100 Rhododendron simsii HOM05D005564 ORTHO05D006872 3.0e-77 292.7 267 57.7
ATR0188G007 Amborella trichopoda HOM05D005564 ORTHO05D006872 6.7e-77 291.6 283 55.5
FAN01G2799 Fragaria x ananassa HOM05D005564 ORTHO05D006872 3.3e-76 289.3 300 53.7
unitig_21.g20780 Utricularia gibba HOM05D005564 ORTHO05D006872 5.5e-71 271.9 253 56.9
Sc19g0002740 Simmondsia chinensis HOM05D005564 ORTHO05D006872 6.1e-62 241.9 204 59.3
SEGI_35477 Sequoiadendron giganteum HOM05D005564 ORTHO05D006872 1.0e-61 241.1 278 48.6
Medtr0092s0090 Medicago truncatula HOM05D005564 ORTHO05D006872 3.0e-61 239.6 217 59.9
Nitab4.5_0000103g0380 Nicotiana tabacum HOM05D005564 ORTHO05D006872 4.0e-61 239.2 165 67.3
Os02g0651000 Oryza sativa ssp. japonica HOM05D005564 ORTHO05D006872 7.5e-60 235.0 189 58.7
Gorai.006G046400 Gossypium raimondii HOM05D005564 ORTHO05D006872 9.8e-60 234.6 226 59.7
MD07G1243300 Malus domestica HOM05D005564 ORTHO05D006872 2.4e-58 229.9 234 53.8
Nn6g32633 Nelumbo nucifera HOM05D005564 ORTHO05D006872 5.9e-57 225.3 204 58.3
Hma1.2p1_1014F.1_g247920 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 2.5e-55 219.9 181 61.9
MD07G1245400 Malus domestica HOM05D005564 ORTHO05D006872 4.3e-55 219.2 149 69.8
arahy.Tifrunner.gnm1.ann1.R6MN5Z Arachis hypogaea HOM05D005564 ORTHO05D006872 4.7e-54 215.7 280 46.4
SMO145G0164 Selaginella moellendorffii HOM05D005564 ORTHO05D006872 1.8e-53 213.8 303 41.6
Dinv34539 Davidia involucrata HOM05D005564 ORTHO05D006872 1.5e-52 210.7 293 45.7
CANSAT78G0945 Cannabis sativa HOM05D005564 ORTHO05D006872 6.4e-51 205.3 237 47.3
AagrBONN_evm.TU.Sc2ySwM_228.2399 Anthoceros agrestis HOM05D005564 ORTHO05D006872 1.3e-48 197.6 251 43.0
Aqoxy3G02663 Aquilegia oxysepala HOM05D005564 ORTHO05D006872 6.6e-48 195.3 130 71.5
Rhsim03G0158000 Rhododendron simsii HOM05D005564 ORTHO05D006872 1.0e-45 188.0 294 42.5
Gohir.D02G135666 Gossypium hirsutum HOM05D005564 ORTHO05D006872 4.0e-45 186.0 106 82.1
CAN.G1016.1 Capsicum annuum HOM05D005564 ORTHO05D006872 1.7e-43 180.6 122 69.7
Pp3c13_1340 Physcomitrium patens HOM05D005564 ORTHO05D006872 2.7e-41 173.3 249 41.0
Prupe.4G133000 Prunus persica HOM05D005564 ORTHO05D006872 1.0e-40 171.4 170 52.4
CDE11G0070 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 4.3e-39 166.0 204 46.6
Lsat_1_v5_gn_8_13861 Lactuca sativa HOM05D000071 ORTHO05D006872 1.6e-38 164.1 117 65.0
Gohir.D02G130966 Gossypium hirsutum HOM05D005564 ORTHO05D006872 4.4e-36 156.0 145 60.0
CBR_g31024 Chara braunii HOM05D005564 ORTHO05D006872 6.6e-32 142.1 310 33.2
Psat3g166160 Pisum sativum HOM05D005564 ORTHO05D006872 1.5e-31 141.0 218 42.2
Nn6g32636 Nelumbo nucifera HOM05D005564 ORTHO05D006872 9.5e-31 138.3 85 78.8
Psat3g164240 Pisum sativum HOM05D005564 ORTHO05D006872 6.2e-30 135.6 200 44.0
Mapoly0036s0004 Marchantia polymorpha HOM05D005564 ORTHO05D006872 1.8e-21 107.5 172 41.9
MCO11G677 Micromonas commoda HOM05D005564 ORTHO05D006872 1.5e-15 87.8 231 29.0
Cre01.g041900 Chlamydomonas reinhardtii HOM05D005564 ORTHO05D006872 2.4e-13 80.5 221 28.5
Aqoxy3G02664 Aquilegia oxysepala HOM05D000665 ORTHO05D000140 2.3e-08 63.9 87 47.1


User provided reference genes

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