Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G011750 Manihot esculenta HOM05D005626 ORTHO05D007372 3.3e-81 305.4 211 100.0
Manes.06G012351 Manihot esculenta HOM05D005626 ORTHO05D007372 7.6e-70 267.7 203 94.6
Manes.06G011400 Manihot esculenta HOM05D005626 ORTHO05D007372 2.7e-67 259.2 203 92.1
Cfa016215 Carpinus fangiana HOM05D005626 ORTHO05D007372 1.3e-58 230.3 203 78.3
Haze_00226 Corylus avellana HOM05D005626 ORTHO05D007372 7.6e-54 214.5 228 70.2
CANSAT21G0821 Cannabis sativa HOM05D005626 ORTHO05D007372 3.2e-52 209.1 203 75.4
THA.LOC104799967 Tarenaya hassleriana HOM05D005626 ORTHO05D007372 4.6e-51 205.3 202 71.3
AUR62006074 Chenopodium quinoa HOM05D005626 ORTHO05D007372 1.8e-50 203.4 202 72.3
Prupe.2G313200 Prunus persica HOM05D005626 ORTHO05D007372 1.5e-49 200.3 203 73.4
Gohir.A09G185000 Gossypium hirsutum HOM05D005626 ORTHO05D007372 1.2e-46 190.7 202 72.8
Gohir.D09G179900 Gossypium hirsutum HOM05D005626 ORTHO05D007372 1.2e-46 190.7 202 72.8
Atru.chr12.2245_Atru.chr12.2244 Acer truncatum HOM05D005626 ORTHO05D007372 2.0e-46 189.9 203 71.9
Cc02_g01370 Coffea canephora HOM05D005626 ORTHO05D007372 2.6e-46 189.5 202 60.4
RcHm_v2.0_Chr1g0381501 Rosa chinensis HOM05D005626 ORTHO05D007372 4.5e-46 188.7 203 72.9
FAN06G4319 Fragaria x ananassa HOM05D005626 ORTHO05D007372 1.3e-45 187.2 203 71.9
Gorai.006G201900 Gossypium raimondii HOM05D005626 ORTHO05D007372 2.2e-45 186.4 228 66.2
CAN.G481.28 Capsicum annuum HOM05D005626 ORTHO05D007372 2.9e-45 186.0 203 66.5
GSVIVG01038569001 Vitis vinifera HOM05D005626 ORTHO05D007372 6.5e-45 184.9 203 69.0
FvH4_7g31990 Fragaria vesca HOM05D005626 ORTHO05D007372 8.4e-45 184.5 203 71.4
QL09p008055 Quercus lobata HOM05D005626 ORTHO05D007372 1.4e-44 183.7 176 53.4
PGR042G1168 Punica granatum HOM05D005626 ORTHO05D007372 5.5e-44 181.8 205 71.7
QL09p007984 Quercus lobata HOM05D005626 ORTHO05D007372 7.1e-44 181.4 203 70.0
Hund11648 Selenicereus undatus HOM05D005626 ORTHO05D007372 7.1e-44 181.4 202 67.8
CSS0044766 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 3.5e-43 179.1 202 65.8
Sc25g0000940 Simmondsia chinensis HOM05D005626 ORTHO05D007372 7.9e-43 177.9 203 69.5
TWI39G0896 Tripterygium wilfordii HOM05D005626 ORTHO05D007372 3.9e-42 175.6 202 69.8
MBI07_g24765_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 8.7e-42 174.5 214 64.0
arahy.Tifrunner.gnm1.ann1.ULB6CG Arachis hypogaea HOM05D005626 ORTHO05D007372 7.4e-41 171.4 201 63.2
Sopen03g022800 Solanum pennellii HOM05D005626 ORTHO05D007372 1.3e-40 170.6 203 64.0
Solyc03g082990.3 Solanum lycopersicum HOM05D005626 ORTHO05D007372 1.6e-40 170.2 203 64.0
Nitab4.5_0005491g0050 Nicotiana tabacum HOM05D005626 ORTHO05D007372 2.2e-40 169.9 203 64.0
MD01G1222800 Malus domestica HOM05D005626 ORTHO05D007372 3.7e-40 169.1 203 68.5
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 8.2e-40 167.9 255 58.4
TPR.G33639 Trifolium pratense HOM05D005626 ORTHO05D007372 8.2e-40 167.9 202 67.8
Thecc.03G201200 Theobroma cacao HOM05D005626 ORTHO05D007372 1.1e-39 167.5 202 68.3
Oeu010695.1 Olea europaea HOM05D005626 ORTHO05D007372 1.0e-37 161.0 203 64.5
AUR62035551 Chenopodium quinoa HOM05D005626 ORTHO05D007372 2.9e-37 159.5 182 57.1
Psat5g076080 Pisum sativum HOM05D005626 ORTHO05D007372 8.5e-37 157.9 202 65.3
arahy.Tifrunner.gnm1.ann1.DCMH6Q Arachis hypogaea HOM05D005626 ORTHO05D007372 1.4e-36 157.1 202 59.9
arahy.Tifrunner.gnm1.ann1.CHU3M4 Arachis hypogaea HOM05D005626 ORTHO05D007372 2.5e-36 156.4 202 59.4
HPP92_005288 Vanilla planifolia HOM05D005626 ORTHO05D007372 3.2e-36 156.0 203 57.6
CSS0003989 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 2.1e-35 153.3 268 38.8
Actinidia18659 Actinidia chinensis HOM05D005626 ORTHO05D007372 2.7e-35 152.9 202 63.9
Peaxi162Scf00740g00226 Petunia axillaris HOM05D005626 ORTHO05D007372 4.6e-35 152.1 203 58.6
TAR375G0360 Trochodendron aralioides HOM05D005626 ORTHO05D007372 4.6e-35 152.1 203 65.0
CiPaw.06G045100 Carya illinoinensis HOM05D005626 ORTHO05D007372 3.9e-34 149.1 202 64.9
Migut.F00199 Erythranthe guttata HOM05D005626 ORTHO05D007372 3.9e-34 149.1 203 60.6
ATR0730G125 Amborella trichopoda HOM05D005626 ORTHO05D007372 4.3e-33 145.6 96 68.8
arahy.Tifrunner.gnm1.ann1.1DU7LF Arachis hypogaea HOM05D005626 ORTHO05D007372 4.3e-33 145.6 194 59.3
CSS0000100 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 1.3e-32 144.1 108 65.7
FAN10G0040 Fragaria x ananassa HOM05D005626 ORTHO05D009683 1.3e-32 144.1 299 49.8
MBI07_g43862_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 1.8e-31 140.2 208 40.4
DCAR_010593 Daucus carota HOM05D005626 ORTHO05D007372 9.1e-31 137.9 110 60.0
CDE02G3804 Ceratophyllum demersum HOM05D005626 ORTHO05D007372 1.2e-30 137.5 202 55.9
SalBow4G1489 Salvia bowleyana HOM05D005626 ORTHO05D007372 1.2e-30 137.5 202 45.0
Ca_16720_v3 Cicer arietinum L. HOM05D005626 ORTHO05D007372 1.0e-29 134.4 202 60.4
unitig_92.g28249 Utricularia gibba HOM05D005626 ORTHO05D007372 1.7e-29 133.7 202 57.4
Hma1.2p1_2307F.1_g319430 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 1.4e-28 130.6 203 62.1
MBI19_g14787_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 1.4e-28 130.6 85 71.8
COL.COLO4_16792 Corchorus olitorius HOM05D005626 ORTHO05D007032 2.5e-28 129.8 202 61.4
Manes.06G012101 Manihot esculenta HOM05D005626 ORTHO05D007372 1.0e-26 124.4 139 84.2
Eucgr.A01448 Eucalyptus grandis HOM05D005626 ORTHO05D007372 2.3e-26 123.2 205 60.5
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 3.9e-26 122.5 202 57.9
AT5G53080 Arabidopsis thaliana HOM05D005626 ORTHO05D007372 3.9e-26 122.5 202 58.9
Dinv29256 Davidia involucrata HOM05D005626 ORTHO05D007372 3.9e-26 122.5 203 60.6
Phvul.009G051300 Phaseolus vulgaris HOM05D005626 ORTHO05D007372 1.1e-25 120.9 201 55.7
Sed0007830 Sechium edule HOM05D005626 ORTHO05D007372 2.6e-25 119.8 203 60.6
Ah.07g205460 Amaranthus hybridus HOM05D005626 ORTHO05D007372 7.4e-25 118.2 202 58.4
Hma1.2p1_0591F.1_g185250 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 2.8e-24 116.3 203 58.6
Nn1g00302 Nelumbo nucifera HOM05D005626 ORTHO05D007372 2.8e-24 116.3 203 58.1
EL10Ac3g05260 Beta vulgaris HOM05D005626 ORTHO05D007372 4.8e-24 115.5 202 58.9
Ciclev10020013m.g Citrus clementina HOM05D005626 ORTHO05D007372 1.1e-23 114.4 202 58.9
Duzib084G0104 Durio zibethinus HOM05D005626 ORTHO05D007372 2.4e-23 113.2 202 57.9
Lj1g0019302 Lotus japonicus HOM05D005626 ORTHO05D007372 7.0e-23 111.7 202 54.0
VMungo1309G2515 Vigna mungo HOM05D005626 ORTHO05D007372 1.5e-22 110.5 201 53.2
Aqoxy5G04311 Aquilegia oxysepala HOM05D005626 ORTHO05D007372 3.5e-22 109.4 77 63.6
Glyma.04G234300 Glycine max HOM05D005626 ORTHO05D007372 4.5e-22 109.0 202 56.4
Cpa.g.sc3.101 Carica papaya HOM05D005626 ORTHO05D007372 7.7e-22 108.2 203 57.6
MSTRG.27018 Avicennia marina HOM05D005626 ORTHO05D007372 1.0e-21 107.8 201 50.7
Sabra15G0008900 Salix brachista HOM05D005626 ORTHO05D007372 1.7e-21 107.1 203 59.1
Potri.015G010800 Populus trichocarpa HOM05D005626 ORTHO05D007372 5.0e-21 105.5 203 58.1
Carub.0008s1328 Capsella rubella HOM05D005626 ORTHO05D007372 8.5e-21 104.8 67 70.1
Thhalv10013148m.g Eutrema salsugineum HOM05D005626 ORTHO05D007372 8.5e-21 104.8 202 55.4
CARHR266100 Cardamine hirsuta HOM05D005626 ORTHO05D007372 2.5e-20 103.2 202 54.0
Medtr3g091780 Medicago truncatula HOM05D005626 ORTHO05D007372 2.5e-20 103.2 202 55.4
ClCG01G000360 Citrullus lanatus HOM05D005626 ORTHO05D007372 9.4e-20 101.3 59 81.4
Lalb_Chr08g0240121 Lupinus albus HOM05D005626 ORTHO05D007372 9.4e-20 101.3 202 53.5
Sp6g15250 Schrenkiella parvula HOM05D005626 ORTHO05D007372 1.2e-19 100.9 64 70.3
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 1.6e-19 100.5 201 32.3
CsaV3_5G000430 Cucumis sativus L. HOM05D005626 ORTHO05D007372 1.6e-19 100.5 64 76.6
Lsat_1_v5_gn_9_49841 Lactuca sativa HOM05D005626 ORTHO05D007372 8.0e-19 98.2 202 52.5
AL8G27710 Arabidopsis lyrata HOM05D005626 ORTHO05D007372 2.3e-18 96.7 202 54.0
A02p11310 Brassica napus HOM05D005626 ORTHO05D007372 3.0e-18 96.3 66 63.6
BraA02t06193Z Brassica rapa HOM05D005626 ORTHO05D007372 3.0e-18 96.3 66 63.6
C02p18690 Brassica napus HOM05D005626 ORTHO05D007372 4.0e-18 95.9 65 64.6
BolC2t08014H Brassica oleracea HOM05D005626 ORTHO05D007372 4.0e-18 95.9 65 64.6
PSO170G4344 Papaver somniferum HOM05D005626 ORTHO05D007372 5.2e-18 95.5 70 61.4
BcaC03g14458 Brassica carinata HOM05D005626 ORTHO05D007372 6.7e-18 95.1 64 67.2
Lj8A623T21 Lonicera japonica HOM05D005626 ORTHO05D007372 6.7e-18 95.1 203 54.2
PSO063G0511 Papaver somniferum HOM05D005626 ORTHO05D007372 8.8e-18 94.7 202 53.0
MELO3C005892.2 Cucumis melo HOM05D005626 ORTHO05D007372 1.1e-17 94.4 58 77.6
SEGI_36936 Sequoiadendron giganteum HOM05D005626 ORTHO05D007372 2.6e-17 93.2 176 32.4
FAN10G2571 Fragaria x ananassa HOM05D005626 ORTHO05D007372 3.3e-17 92.8 208 52.4
ECA232G0910 Erigeron canadensis HOM05D005626 ORTHO05D007372 5.7e-17 92.0 200 55.0
BcaB05g22007 Brassica carinata HOM05D005626 ORTHO05D007372 7.5e-17 91.7 58 72.4
Mapoly0045s0029 Marchantia polymorpha HOM05D005626 ORTHO05D007372 4.8e-16 89.0 199 51.3
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 1.2e-14 84.3 202 47.0
HanXRQChr15g0485681 Helianthus annuus HOM05D005626 ORTHO05D007372 1.0e-13 81.3 202 51.0
PGSC0003DMG400018528 Solanum tuberosum HOM05D005626 ORTHO05D007372 3.6e-11 72.8 43 79.1
Mapoly0001s0084 Marchantia polymorpha HOM05D005626 ORTHO05D007372 8.0e-11 71.6 185 37.8
Pp3c5_16230 Physcomitrium patens HOM05D005626 ORTHO05D007372 1.4e-10 70.9 197 26.9
CBR_g37721 Chara braunii HOM05D005626 ORTHO05D007372 1.6e-06 57.4 115 28.7
Glyma.06G130333 Glycine max HOM05D005626 ORTHO05D007372 2.7e-06 56.6 45 55.6
Pp3c16_9300 Physcomitrium patens HOM05D005626 ORTHO05D007372 2.7e-06 56.6 202 23.8
MBI19_g14786_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 3.5e-06 56.2 47 53.2


User provided reference genes

Program Settings