Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G122500 Manihot esculenta HOM05D003909 ORTHO05D004478 5.1e-193 677.9 441 100.0
Manes.11G048200 Manihot esculenta HOM05D003909 ORTHO05D004478 2.8e-159 565.8 450 77.3
Potri.001G179100 Populus trichocarpa HOM05D003909 ORTHO05D004478 2.2e-127 459.9 499 61.9
Dinv30518 Davidia involucrata HOM05D003909 ORTHO05D004478 8.3e-127 458.0 451 62.1
Thecc.06G085100 Theobroma cacao HOM05D003909 ORTHO05D004478 3.5e-125 452.6 474 59.5
Duzib192G0576 Durio zibethinus HOM05D003909 ORTHO05D004478 3.8e-124 449.1 459 65.4
Sabra01G0147800 Salix brachista HOM05D003909 ORTHO05D004478 5.0e-124 448.7 493 58.6
Duzib160G0939 Durio zibethinus HOM05D003909 ORTHO05D004478 1.5e-123 447.2 478 59.0
Atru.chr1.3248 Acer truncatum HOM05D003909 ORTHO05D004478 8.0e-122 441.4 459 67.3
Sabra03G0031800 Salix brachista HOM05D003909 ORTHO05D004478 3.0e-121 439.5 496 61.5
COL.COLO4_30356 Corchorus olitorius HOM05D003909 ORTHO05D004478 8.9e-121 438.0 458 65.9
CSS0044508 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 1.3e-119 434.1 438 62.1
Potri.003G056400 Populus trichocarpa HOM05D003909 ORTHO05D004478 2.8e-119 433.0 524 54.6
Prupe.3G072500 Prunus persica HOM05D003909 ORTHO05D004478 9.2e-118 427.9 444 61.0
Ciclev10025626m.g Citrus clementina HOM05D003909 ORTHO05D004478 1.2e-117 427.6 453 64.2
Dinv38052 Davidia involucrata HOM05D003909 ORTHO05D004478 2.0e-117 426.8 446 65.7
TWI18G1146 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 7.8e-117 424.9 463 69.5
CiPaw.02G151900 Carya illinoinensis HOM05D003909 ORTHO05D004478 3.3e-115 419.5 451 57.4
QL05p024883 Quercus lobata HOM05D003909 ORTHO05D004478 3.3e-115 419.5 440 60.9
QL05p024997 Quercus lobata HOM05D003909 ORTHO05D004478 3.3e-115 419.5 440 60.9
TWI75G1291 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 4.3e-115 419.1 441 64.9
CiPaw.01G240200 Carya illinoinensis HOM05D003909 ORTHO05D004478 9.5e-115 417.9 457 56.5
Actinidia32764 Actinidia chinensis HOM05D003909 ORTHO05D004478 8.0e-114 414.8 448 69.0
TAR626G0719 Trochodendron aralioides HOM05D003909 ORTHO05D004478 4.4e-112 409.1 451 56.1
TAR383G0140 Trochodendron aralioides HOM05D003909 ORTHO05D004478 1.3e-111 407.5 445 55.3
Lj5C61T11 Lonicera japonica HOM05D003909 ORTHO05D004478 2.2e-111 406.8 451 54.3
Lj9P507T43 Lonicera japonica HOM05D003909 ORTHO05D004478 2.4e-110 403.3 447 56.6
CSS0004276 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 4.1e-110 402.5 444 60.8
Gohir.A02G122200 Gossypium hirsutum HOM05D003909 ORTHO05D004478 5.4e-110 402.1 470 58.9
Actinidia01799 Actinidia chinensis HOM05D001315 ORTHO05D001618 1.2e-109 401.0 447 60.2
Eucgr.F02948 Eucalyptus grandis HOM05D003909 ORTHO05D004478 2.0e-109 400.2 448 54.5
Haze_16447 Corylus avellana HOM05D003909 ORTHO05D004478 1.0e-108 397.9 442 60.2
Gorai.002G058700 Gossypium raimondii HOM05D003909 ORTHO05D004478 1.3e-108 397.5 470 55.7
Cfa002057 Carpinus fangiana HOM05D003909 ORTHO05D004478 2.3e-108 396.7 451 59.0
Nitab4.5_0000671g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 2.3e-108 396.7 453 65.3
Rhsim12G0197200 Rhododendron simsii HOM05D003909 ORTHO05D004478 6.6e-108 395.2 445 56.2
Hma1.2p1_0682F.1_g202710 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 8.6e-108 394.8 449 61.5
MD09G1214400 Malus domestica HOM05D003909 ORTHO05D004478 8.6e-108 394.8 447 56.2
Nitab4.5_0006801g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 1.1e-107 394.4 451 61.0
Actinidia08971 Actinidia chinensis HOM05D003909 ORTHO05D004478 1.5e-107 394.0 459 58.4
Cc04_g03530 Coffea canephora HOM05D003909 ORTHO05D004478 1.5e-107 394.0 444 53.8
Peaxi162Scf00015g10039 Petunia axillaris HOM05D003909 ORTHO05D004478 1.9e-107 393.7 467 55.2
MD17G1196800 Malus domestica HOM05D003909 ORTHO05D004478 2.5e-107 393.3 446 57.4
Gohir.D03G074300 Gossypium hirsutum HOM05D003909 ORTHO05D004478 3.3e-107 392.9 470 56.4
FAN05G4496 Fragaria x ananassa HOM05D003909 ORTHO05D004478 1.1e-105 387.9 441 63.0
TAR636G1173 Trochodendron aralioides HOM05D003909 ORTHO05D004478 1.4e-105 387.5 453 57.8
FvH4_6g31000 Fragaria vesca HOM05D003909 ORTHO05D004478 4.0e-105 386.0 441 55.3
Aqoxy7G01805 Aquilegia oxysepala HOM05D003909 ORTHO05D004478 1.5e-104 384.0 448 52.5
vmacro18921 Vaccinium macrocarpon HOM05D003909 ORTHO05D004478 2.9e-103 379.8 442 54.1
CAN.G395.16 Capsicum annuum HOM05D003909 ORTHO05D004478 1.4e-102 377.5 450 51.1
GSVIVG01017123001 Vitis vinifera HOM05D003909 ORTHO05D004478 1.4e-102 377.5 441 52.8
Nitab4.5_0000351g0150 Nicotiana tabacum HOM05D003909 ORTHO05D004478 2.4e-102 376.7 453 51.0
Nitab4.5_0002327g0010 Nicotiana tabacum HOM05D003909 ORTHO05D004478 3.2e-102 376.3 447 53.2
FAN02G1452 Fragaria x ananassa HOM05D003909 ORTHO05D004478 4.1e-102 375.9 443 61.2
CAN.G438.59 Capsicum annuum HOM05D003909 ORTHO05D004478 2.7e-101 373.2 456 57.7
Hma1.2p1_0323F.1_g125230 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 2.7e-101 373.2 448 56.2
PGR102G2609 Punica granatum HOM05D003909 ORTHO05D004478 2.7e-101 373.2 467 57.6
Glyma.15G013600 Glycine max HOM05D003909 ORTHO05D004478 3.5e-101 372.9 464 61.0
MSTRG.4728 Avicennia marina HOM05D003909 ORTHO05D004478 2.3e-100 370.2 447 54.4
Cpa.g.c31444.1 Carica papaya HOM05D003909 ORTHO05D004478 3.9e-100 369.4 475 50.9
Oeu033481.1 Olea europaea HOM05D003909 ORTHO05D004478 6.6e-100 368.6 468 62.2
Solyc03g120280.1 Solanum lycopersicum HOM05D003909 ORTHO05D004478 8.6e-100 368.2 466 54.1
VMungo1080G0623 Vigna mungo HOM05D003909 ORTHO05D004478 1.5e-99 367.5 466 57.9
Sopen03g039170 Solanum pennellii HOM05D003909 ORTHO05D004478 4.3e-99 365.9 451 52.3
CsaV3_7G033090 Cucumis sativus L. HOM05D003909 ORTHO05D004478 5.6e-99 365.5 483 56.1
ECA247G1970 Erigeron canadensis HOM05D003909 ORTHO05D004478 9.5e-99 364.8 446 60.1
MELO3C024224.2 Cucumis melo HOM05D003909 ORTHO05D004478 2.1e-98 363.6 483 56.5
MSTRG.22695 Avicennia marina HOM05D003909 ORTHO05D004478 1.8e-97 360.5 487 49.7
Glyma.13G360300 Glycine max HOM05D003909 ORTHO05D004478 1.8e-97 360.5 466 60.9
ClCG09G002210 Citrullus lanatus HOM05D003909 ORTHO05D004478 3.1e-97 359.8 497 55.9
Lsat_1_v5_gn_1_34841 Lactuca sativa HOM05D003909 ORTHO05D004478 3.1e-97 359.8 448 51.8
Sed0003438 Sechium edule HOM05D003909 ORTHO05D004478 4.0e-97 359.4 484 57.0
PGSC0003DMG400002641 Solanum tuberosum HOM05D003909 ORTHO05D004478 4.0e-97 359.4 447 48.3
Phvul.005G172100 Phaseolus vulgaris HOM05D003909 ORTHO05D004478 1.5e-96 357.5 472 53.0
Sopen06g025020 Solanum pennellii HOM05D003909 ORTHO05D004478 4.4e-96 355.9 451 49.9
PSO782G4639 Papaver somniferum HOM05D003909 ORTHO05D004478 9.9e-96 354.8 453 56.3
arahy.Tifrunner.gnm1.ann1.63P8XR Arachis hypogaea HOM05D003909 ORTHO05D004478 2.2e-95 353.6 460 63.9
CANSAT56G2173 Cannabis sativa HOM05D003909 ORTHO05D004478 2.9e-95 353.2 449 52.1
PSO063G3399 Papaver somniferum HOM05D003909 ORTHO05D004478 3.7e-95 352.8 450 55.6
THA.LOC104810518 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 6.4e-95 352.1 449 55.5
Lj3g0018129 Lotus japonicus HOM05D003909 ORTHO05D004478 2.7e-93 346.7 451 54.1
MBI04_g18158_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 1.3e-92 344.4 448 52.9
Rhsim08G0220400 Rhododendron simsii HOM05D003909 ORTHO05D004478 3.0e-92 343.2 409 55.7
HanXRQChr02g0032691 Helianthus annuus HOM05D003909 ORTHO05D004478 5.6e-91 339.0 448 59.6
Solyc06g066740.3 Solanum lycopersicum HOM05D003909 ORTHO05D004478 5.6e-91 339.0 465 49.7
Lalb_Chr22g0351201 Lupinus albus HOM05D003909 ORTHO05D004478 1.2e-90 337.8 446 60.5
SEGI_39159 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 1.2e-90 337.8 469 47.5
Aa31LG8G3120 Aethionema arabicum HOM05D003909 ORTHO05D004478 2.1e-90 337.0 467 46.5
HanXRQChr10g0314961 Helianthus annuus HOM05D003909 ORTHO05D004478 6.2e-90 335.5 466 54.5
Sc15g0001250 Simmondsia chinensis HOM05D003909 ORTHO05D004478 8.1e-90 335.1 456 50.4
ATR1120G115 Amborella trichopoda HOM05D003909 ORTHO05D004478 1.1e-89 334.7 462 49.4
AUR62016436 Chenopodium quinoa HOM05D003909 ORTHO05D004478 1.1e-89 334.7 448 53.3
Ah.01g006030 Amaranthus hybridus HOM05D003909 ORTHO05D004478 1.4e-89 334.3 473 47.4
Migut.I00858 Erythranthe guttata HOM05D003909 ORTHO05D004478 1.8e-89 334.0 468 50.9
Sed0010123 Sechium edule HOM05D003909 ORTHO05D004478 1.8e-89 334.0 488 52.0
Thhalv10020773m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 4.0e-89 332.8 449 46.8
AUR62011621 Chenopodium quinoa HOM05D003909 ORTHO05D004478 1.5e-88 330.9 461 51.8
Ca_20399_v3 Cicer arietinum L. HOM05D003909 ORTHO05D004478 4.4e-88 329.3 449 56.8
Nn8g39239 Nelumbo nucifera HOM05D003909 ORTHO05D004478 7.6e-88 328.6 234 73.9
Carub.0003s1570 Capsella rubella HOM05D003909 ORTHO05D004478 9.9e-88 328.2 452 52.9
Ah.01g021220 Amaranthus hybridus HOM05D003909 ORTHO05D004478 1.3e-87 327.8 450 52.2
EL10Ac9g21982 Beta vulgaris HOM05D003909 ORTHO05D004478 1.3e-87 327.8 450 54.0
TPR.G24152 Trifolium pratense HOM05D003909 ORTHO05D004478 4.9e-87 325.9 442 57.9
AL3G28620 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 3.2e-86 323.2 483 48.9
Medtr4g011930 Medicago truncatula HOM05D003909 ORTHO05D004478 5.4e-86 322.4 452 51.3
Sp3g14320 Schrenkiella parvula HOM05D003909 ORTHO05D004478 5.4e-86 322.4 434 47.0
PGSC0003DMG400016510 Solanum tuberosum HOM05D003909 ORTHO05D004478 7.1e-86 322.0 452 45.8
Nn2g11803 Nelumbo nucifera HOM05D003909 ORTHO05D004478 6.6e-84 315.5 244 68.9
DCAR_026310 Daucus carota HOM05D003909 ORTHO05D004478 1.9e-83 313.9 477 51.8
Psat7g253000 Pisum sativum HOM05D003909 ORTHO05D004478 1.9e-83 313.9 440 48.2
CARHR091100 Cardamine hirsuta HOM05D003909 ORTHO05D004478 3.3e-83 313.2 461 45.1
unitig_21.g20517 Utricularia gibba HOM05D003909 ORTHO05D004478 9.6e-83 311.6 456 44.5
Carub.0001s4138 Capsella rubella HOM05D003909 ORTHO05D004478 1.3e-82 311.2 453 44.8
Lalb_Chr24g0395791 Lupinus albus HOM05D003909 ORTHO05D004478 4.8e-82 309.3 457 56.5
THA.LOC104818004 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 1.8e-81 307.4 456 49.1
AT1G52380 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 2.4e-81 307.0 453 44.6
AT3G15970 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 9.0e-81 305.1 483 41.8
CARHR042530 Cardamine hirsuta HOM05D003909 ORTHO05D004478 3.4e-80 303.1 445 45.4
AL1G60630 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 2.9e-79 300.1 458 46.5
Sp1g38990 Schrenkiella parvula HOM05D003909 ORTHO05D004478 4.2e-78 296.2 451 51.0
HanXRQChr04g0096531 Helianthus annuus HOM05D003909 ORTHO05D004478 5.4e-78 295.8 480 57.3
SGA_v2.0_scaffold5G02599 Striga asiatica HOM05D003909 ORTHO05D004478 1.2e-77 294.7 451 50.1
BraA05t20804Z Brassica rapa HOM05D003909 ORTHO05D004478 3.5e-77 293.1 443 43.8
A05p19040 Brassica napus HOM05D003909 ORTHO05D004478 7.9e-77 292.0 443 43.6
BcaB02g10997 Brassica carinata HOM05D003909 ORTHO05D004478 1.0e-76 291.6 448 45.5
Thhalv10011504m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 1.7e-76 290.8 449 44.8
Os05g0349500 Oryza sativa ssp. japonica HOM05D003909 ORTHO05D004478 3.0e-76 290.0 492 42.3
Lalb_Chr14g0373481 Lupinus albus HOM05D003909 ORTHO05D004478 3.9e-76 289.7 459 54.9
RcHm_v2.0_Chr2g0137631 Rosa chinensis HOM05D003909 ORTHO05D004478 3.9e-76 289.7 438 48.9
A06p01850 Brassica napus HOM05D003909 ORTHO05D004478 2.5e-75 287.0 448 48.9
SalBow2G1612 Salvia bowleyana HOM05D003909 ORTHO05D004478 2.5e-75 287.0 237 63.3
MBI01_g16632_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 9.6e-75 285.0 431 45.5
BraA06t23402Z Brassica rapa HOM05D003909 ORTHO05D004478 2.8e-74 283.5 450 49.1
BcaC08g43991 Brassica carinata HOM05D003909 ORTHO05D004478 1.8e-73 280.8 447 43.0
C06p13960 Brassica napus HOM05D003909 ORTHO05D004478 1.8e-73 280.8 447 43.0
BolC6t36574H Brassica oleracea HOM05D001315 ORTHO05D001618 1.8e-73 280.8 447 43.0
Aa31LG10G2540 Aethionema arabicum HOM05D003909 ORTHO05D004478 5.3e-73 279.3 453 43.5
BolC6t35869H Brassica oleracea HOM05D003909 ORTHO05D004478 1.5e-72 277.7 452 43.8
C06p07830 Brassica napus HOM05D003909 ORTHO05D004478 2.0e-72 277.3 453 43.7
HPP92_019977 Vanilla planifolia HOM05D003909 ORTHO05D004478 1.9e-67 260.8 461 41.0
Zm00001eb360880 Zea mays HOM05D003909 ORTHO05D004478 1.8e-65 254.2 455 44.4
SEGI_02359 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 1.5e-59 234.6 469 39.9
BcaC01g03847 Brassica carinata HOM05D003909 ORTHO05D004478 2.0e-56 224.2 448 42.0
C03p47980 Brassica napus HOM05D003909 ORTHO05D004478 2.0e-56 224.2 448 42.0
Mapoly0073s0079 Marchantia polymorpha HOM05D003909 ORTHO05D004478 2.0e-56 224.2 489 38.4
SHI24405 Sapria himalayana HOM05D003909 ORTHO05D004478 2.0e-56 224.2 451 48.1
BolC3t17078H Brassica oleracea HOM05D003909 ORTHO05D004478 5.8e-56 222.6 448 41.7
Zm00001eb155830 Zea mays HOM05D003909 ORTHO05D004478 2.9e-55 220.3 463 38.7
BcaC08g43418 Brassica carinata HOM05D003909 ORTHO05D004478 1.1e-54 218.4 453 43.9
MBI04_g40091_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 1.9e-54 217.6 352 44.0
BcaC08g43420 Brassica carinata HOM05D003909 ORTHO05D004478 5.3e-49 199.5 161 66.5
AagrBONN_evm.TU.Sc2ySwM_228.3069 Anthoceros agrestis HOM05D003909 ORTHO05D004478 9.4e-46 188.7 480 42.1
Pp3c3_6080 Physcomitrium patens HOM05D003909 ORTHO05D004478 4.3e-43 179.9 472 41.3
CDE06G1609 Ceratophyllum demersum HOM05D003909 ORTHO05D004478 5.7e-43 179.5 357 39.8
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 6.9e-41 172.6 437 36.2
MBI04_g43353_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 1.1e-38 165.2 169 54.4
unitig_744.g24336 Utricularia gibba HOM05D003909 ORTHO05D004478 4.2e-38 163.3 352 36.9
Actinidia14363 Actinidia chinensis HOM05D003909 ORTHO05D004478 1.1e-30 138.7 78 83.3
A06p01830 Brassica napus HOM05D003909 ORTHO05D004478 1.5e-27 128.3 103 68.0
CBR_g38869 Chara braunii HOM05D003909 ORTHO05D004478 9.1e-25 119.0 131 45.0
BcaC01g01324 Brassica carinata HOM05D003909 ORTHO05D004478 1.1e-22 112.1 134 50.0
C03p90640 Brassica napus HOM05D003909 ORTHO05D004478 1.2e-21 108.6 128 50.0
BolC3t21386H Brassica oleracea HOM05D001315 ORTHO05D001618 1.2e-21 108.6 128 50.0
BraA06t23400Z Brassica rapa HOM05D003909 ORTHO05D004478 8.0e-21 105.9 89 66.3
MCO12G345 Micromonas commoda HOM05D003909 ORTHO05D004478 9.8e-19 99.0 112 44.6
Psat4g143640 Pisum sativum HOM05D002956 ORTHO05D008031 2.2e-18 97.8 106 59.4
arahy.Tifrunner.gnm1.ann1.HH7TIC Arachis hypogaea HOM05D003909 ORTHO05D004478 4.8e-18 96.7 105 57.1
A03p39600 Brassica napus HOM05D003909 ORTHO05D004478 2.4e-17 94.4 173 38.7
Medtr1g112060 Medicago truncatula HOM05D003909 ORTHO05D004478 7.0e-17 92.8 84 64.3
PRCOL_00002651 Prasinoderma coloniale HOM05D003909 ORTHO05D004478 4.2e-14 83.6 250 29.2
C06p07870 Brassica napus HOM05D003909 ORTHO05D004478 5.5e-14 83.2 113 46.9
BolC6t35871H Brassica oleracea HOM05D003909 ORTHO05D004478 7.2e-14 82.8 121 44.6
unitig_744.g24337 Utricularia gibba HOM05D003909 ORTHO05D004478 4.7e-13 80.1 67 58.2
Cre15.g641000 Chlamydomonas reinhardtii HOM05D003909 ORTHO05D004478 5.7e-11 73.2 86 41.9
HPP92_020042 Vanilla planifolia HOM05D003909 ORTHO05D004478 9.8e-11 72.4 123 40.7
Cfa024721 Carpinus fangiana HOM05D003909 ORTHO05D121609 4.1e-09 67.0 81 42.0
FAN09G3670 Fragaria x ananassa HOM05D003909 ORTHO05D004478 4.5e-08 63.5 62 56.5
MBI04_g43354_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 1.0e-07 62.4 49 75.5
Pp3c4_26980 Physcomitrium patens HOM05D002258 ORTHO05D002539 2.5e-06 57.8 126 35.7
unitig_0.g2557 Utricularia gibba HOM05D002258 ORTHO05D002539 2.5e-06 57.8 124 32.3
Pp3c13_14540 Physcomitrium patens HOM05D002258 ORTHO05D002539 3.3e-06 57.4 146 30.8
CBR_g34252 Chara braunii HOM05D002258 ORTHO05D002539 4.3e-06 57.0 133 32.3
COL.COLO4_11098 Corchorus olitorius HOM05D002258 ORTHO05D002539 4.3e-06 57.0 131 32.1
Pp3c26_8350 Physcomitrium patens HOM05D002258 ORTHO05D002539 4.3e-06 57.0 132 34.1
unitig_88.g27675 Utricularia gibba HOM05D002258 ORTHO05D002539 7.3e-06 56.2 124 32.3


User provided reference genes

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