Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G204600 Manihot esculenta HOM05D006900 ORTHO05D008651 2.3e-213 746.1 657 100.0
Sabra10G0112000 Salix brachista HOM05D006900 ORTHO05D008651 1.4e-117 427.9 669 75.9
Potri.010G145000 Populus trichocarpa HOM05D006900 ORTHO05D008651 6.8e-117 425.6 670 75.2
Thecc.04G300100 Theobroma cacao HOM05D006900 ORTHO05D008651 1.1e-106 391.7 662 74.2
Duzib212G0988 Durio zibethinus HOM05D006900 ORTHO05D008651 3.9e-104 383.3 660 74.7
TAR362G0296 Trochodendron aralioides HOM05D006900 ORTHO05D008651 1.9e-103 380.9 672 72.6
Gohir.D10G178700 Gossypium hirsutum HOM05D006900 ORTHO05D008651 6.2e-102 375.9 668 72.0
Gorai.011G199800 Gossypium raimondii HOM05D006900 ORTHO05D008651 6.2e-102 375.9 668 72.0
CSS0034541 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 1.1e-101 375.2 674 72.6
Gohir.A10G171600 Gossypium hirsutum HOM05D006900 ORTHO05D008651 1.4e-101 374.8 667 72.0
COL.COLO4_34620 Corchorus olitorius HOM05D006900 ORTHO05D008651 6.8e-101 372.5 627 75.4
GSVIVG01034997001 Vitis vinifera HOM05D006900 ORTHO05D008651 1.2e-100 371.7 658 72.5
arahy.Tifrunner.gnm1.ann1.Z0RY6M Arachis hypogaea HOM05D006900 ORTHO05D008651 2.6e-100 370.5 641 73.6
arahy.Tifrunner.gnm1.ann1.88EKIY Arachis hypogaea HOM05D006900 ORTHO05D008651 5.8e-100 369.4 638 73.5
Hma1.2p1_0013F.1_g008570 Hydrangea macrophylla HOM05D006900 ORTHO05D008651 1.6e-97 361.3 641 73.0
Nn3g21725 Nelumbo nucifera HOM05D006900 ORTHO05D008651 1.1e-95 355.1 674 70.6
Prupe.1G117800 Prunus persica HOM05D006900 ORTHO05D008651 1.9e-95 354.4 616 73.9
Sopen04g004200 Solanum pennellii HOM05D006900 ORTHO05D008651 3.3e-95 353.6 668 69.9
Cfa015319 Carpinus fangiana HOM05D006900 ORTHO05D008651 7.3e-95 352.4 644 72.8
Dinv15174 Davidia involucrata HOM05D006900 ORTHO05D008651 9.5e-95 352.1 559 81.2
Peaxi162Scf00681g00223 Petunia axillaris HOM05D006900 ORTHO05D008651 2.1e-94 350.9 674 70.2
Solyc04g009020.4 Solanum lycopersicum HOM05D006900 ORTHO05D008651 3.6e-94 350.1 669 69.8
Actinidia13360 Actinidia chinensis HOM05D006900 ORTHO05D008651 1.1e-93 348.6 673 71.0
Medtr4g122060 Medicago truncatula HOM05D006900 ORTHO05D008651 1.4e-93 348.2 640 72.8
CAN.G274.12 Capsicum annuum HOM05D006900 ORTHO05D008651 3.1e-93 347.1 668 70.7
Lalb_Chr07g0182071 Lupinus albus HOM05D006900 ORTHO05D008651 6.8e-93 345.9 635 72.8
PGR004G2297 Punica granatum HOM05D006900 ORTHO05D008651 6.8e-93 345.9 656 71.8
PGSC0003DMG400011531 Solanum tuberosum HOM05D006900 ORTHO05D008651 6.8e-93 345.9 670 69.4
QL06p012004 Quercus lobata HOM05D006900 ORTHO05D008651 2.0e-92 344.4 664 71.5
Haze_01304 Corylus avellana HOM05D006900 ORTHO05D008651 4.4e-92 343.2 645 72.1
Lj6A690T75 Lonicera japonica HOM05D006900 ORTHO05D008651 4.4e-92 343.2 595 76.6
MD13G1154800 Malus domestica HOM05D006900 ORTHO05D008651 7.5e-92 342.4 648 70.8
Lj4g0008712 Lotus japonicus HOM05D006900 ORTHO05D008651 9.9e-92 342.0 625 74.4
Ciclev10004521m.g Citrus clementina HOM05D006900 ORTHO05D008651 2.9e-91 340.5 651 71.9
TWI09G0824 Tripterygium wilfordii HOM05D006900 ORTHO05D008651 2.9e-91 340.5 635 72.6
HanXRQChr13g0393421 Helianthus annuus HOM05D006900 ORTHO05D008651 6.4e-91 339.3 637 71.4
Psat0s740g0280 Pisum sativum HOM05D006900 ORTHO05D008651 5.4e-90 336.3 617 70.5
Atru.chr4.3007 Acer truncatum HOM05D006900 ORTHO05D008651 7.1e-90 335.9 657 72.0
Glyma.07G240000 Glycine max HOM05D006900 ORTHO05D008651 1.2e-89 335.1 638 71.3
Thhalv10020271m.g Eutrema salsugineum HOM05D006900 ORTHO05D008651 4.6e-89 333.2 601 73.7
Nitab4.5_0004979g0030 Nicotiana tabacum HOM05D006900 ORTHO05D008651 4.6e-89 333.2 685 68.0
Migut.G00056 Erythranthe guttata HOM05D006900 ORTHO05D008651 1.0e-88 332.0 669 69.5
Eucgr.H04042 Eucalyptus grandis HOM05D006900 ORTHO05D008651 1.3e-88 331.6 579 68.2
MSTRG.10150 Avicennia marina HOM05D006900 ORTHO05D008651 3.9e-88 330.1 612 73.7
CiPaw.02G075100 Carya illinoinensis HOM05D006900 ORTHO05D008651 3.9e-88 330.1 601 75.0
Sp3g15260 Schrenkiella parvula HOM05D006900 ORTHO05D008651 3.9e-88 330.1 592 74.3
CANSAT64G2951 Cannabis sativa HOM05D006900 ORTHO05D008651 1.5e-87 328.2 622 74.6
Cc03_g00870 Coffea canephora HOM05D006900 ORTHO05D008651 1.5e-87 328.2 634 72.1
AL3G30020 Arabidopsis lyrata HOM05D006900 ORTHO05D008651 2.5e-87 327.4 550 78.7
Nitab4.5_0010299g0060 Nicotiana tabacum HOM05D006900 ORTHO05D008651 4.3e-87 326.6 715 53.1
THA.LOC104820304 Tarenaya hassleriana HOM05D006900 ORTHO05D008651 4.3e-87 326.6 649 70.3
Carub.0003s1679 Capsella rubella HOM05D006900 ORTHO05D008651 9.5e-87 325.5 592 74.7
VMungo1215G0487 Vigna mungo HOM05D006900 ORTHO05D008651 9.5e-87 325.5 639 69.8
Lsat_1_v5_gn_6_18120 Lactuca sativa HOM05D006900 ORTHO05D008651 3.6e-86 323.6 619 72.4
Glyma.17G033400 Glycine max HOM05D006900 ORTHO05D008651 8.1e-86 322.4 653 69.2
CARHR092290 Cardamine hirsuta HOM05D006900 ORTHO05D008651 1.1e-85 322.0 590 73.7
FAN07G1219 Fragaria x ananassa HOM05D006900 ORTHO05D008651 1.4e-85 321.6 648 69.4
MBI18_g32026_MAGBIO Magnolia biondii HOM05D006900 ORTHO05D008651 1.4e-85 321.6 670 68.5
FvH4_4g19660 Fragaria vesca HOM05D006900 ORTHO05D008651 1.8e-85 321.2 645 69.3
Aa31LG8G4070 Aethionema arabicum HOM05D006900 ORTHO05D008651 2.4e-85 320.9 596 73.3
unitig_748.g8700 Utricularia gibba HOM05D006900 ORTHO05D008651 2.4e-85 320.9 603 72.3
RcHm_v2.0_Chr4g0425111 Rosa chinensis HOM05D006900 ORTHO05D008651 1.5e-84 318.2 649 70.3
Rhsim02G0004000 Rhododendron simsii HOM05D006900 ORTHO05D008651 2.0e-84 317.8 710 43.9
Ah.04g156910 Amaranthus hybridus HOM05D006900 ORTHO05D008651 5.8e-84 316.2 665 68.9
ClCG05G006560 Citrullus lanatus HOM05D006900 ORTHO05D008651 9.9e-84 315.5 656 69.5
FAN12G3178 Fragaria x ananassa HOM05D006900 ORTHO05D008651 9.9e-84 315.5 645 69.0
Aqoxy5G02843 Aquilegia oxysepala HOM05D006900 ORTHO05D008651 4.9e-83 313.2 541 79.3
A05p32690 Brassica napus HOM05D006900 ORTHO05D008651 6.4e-83 312.8 563 75.7
C05p49400 Brassica napus HOM05D006900 ORTHO05D008651 1.1e-82 312.0 563 75.5
BraA05t22092Z Brassica rapa HOM05D006900 ORTHO05D008651 1.1e-82 312.0 563 75.5
SGA_v2.0_scaffold104G30080 Striga asiatica HOM05D006900 ORTHO05D008651 1.4e-82 311.6 662 68.0
BcaB06g25797 Brassica carinata HOM05D006900 ORTHO05D008651 9.2e-82 308.9 565 75.2
BcaC05g28835 Brassica carinata HOM05D006900 ORTHO05D008651 9.2e-82 308.9 564 75.0
BolC5t33686H Brassica oleracea HOM05D006900 ORTHO05D008651 9.2e-82 308.9 564 75.0
ECA233G1261 Erigeron canadensis HOM05D006900 ORTHO05D008651 7.8e-81 305.8 531 79.3
CsaV3_3G015170 Cucumis sativus L. HOM05D006900 ORTHO05D008651 2.3e-80 304.3 655 68.2
Phvul.003G114100 Phaseolus vulgaris HOM05D006900 ORTHO05D008651 3.9e-80 303.5 532 78.4
PSO357G0537 Papaver somniferum HOM05D006900 ORTHO05D008651 5.1e-80 303.1 697 65.6
MELO3C006715.2 Cucumis melo HOM05D006900 ORTHO05D008651 6.6e-80 302.8 655 68.1
PSO170G0176 Papaver somniferum HOM05D006900 ORTHO05D008651 1.1e-79 302.0 690 65.8
CDE12G0762 Ceratophyllum demersum HOM05D006900 ORTHO05D008651 4.3e-79 300.1 664 67.2
AUR62039284 Chenopodium quinoa HOM05D006900 ORTHO05D008651 1.6e-78 298.1 526 78.3
AUR62016204 Chenopodium quinoa HOM05D006900 ORTHO05D008651 8.1e-78 295.8 526 77.9
ATR0693G010 Amborella trichopoda HOM05D006900 ORTHO05D008651 2.0e-76 291.2 624 71.2
TPR.G16830 Trifolium pratense HOM05D006900 ORTHO05D008651 3.8e-75 287.0 656 56.6
vmacro15184 Vaccinium macrocarpon HOM05D006900 ORTHO05D008651 4.9e-75 286.6 677 65.9
EL10Ac3g05503 Beta vulgaris HOM05D006900 ORTHO05D008651 2.7e-73 280.8 549 38.8
Sc15g0003210 Simmondsia chinensis HOM05D006900 ORTHO05D008651 6.0e-73 279.6 557 75.8
Sed0008833 Sechium edule HOM05D006900 ORTHO05D008651 9.6e-71 272.3 631 68.1
Zm00001eb014810 Zea mays HOM05D006900 ORTHO05D008651 9.9e-68 262.3 536 75.0
Hma1.2p1_0013F.1_g008580 Hydrangea macrophylla HOM05D006900 ORTHO05D008651 7.9e-65 252.7 224 62.1
Hund03124 Selenicereus undatus HOM05D006900 ORTHO05D008651 1.3e-64 251.9 722 55.3
Ca_21442_v3 Cicer arietinum L. HOM05D006900 ORTHO05D008651 7.4e-63 246.1 244 59.0
AT3G17040 Arabidopsis thaliana HOM05D006900 ORTHO05D008651 2.1e-62 244.6 190 65.3
DCAR_030472 Daucus carota HOM05D006900 ORTHO05D008651 5.3e-61 240.0 662 59.8
CDE01G0483 Ceratophyllum demersum HOM05D006900 ORTHO05D008651 5.8e-60 236.5 656 61.6
SalBow8G4068 Salvia bowleyana HOM05D006900 ORTHO05D008651 6.4e-59 233.0 222 59.0
Os03g0308800 Oryza sativa ssp. japonica HOM05D006900 ORTHO05D008651 5.1e-48 196.8 150 61.3
SEGI_12330 Sequoiadendron giganteum HOM05D006900 ORTHO05D008651 1.1e-45 189.1 496 73.6
Cpa.g.sc9.62 Carica papaya HOM05D006900 ORTHO05D008651 3.6e-41 174.1 190 65.3
CANSAT78G0722 Cannabis sativa HOM05D006900 ORTHO05D008651 6.7e-40 169.9 239 47.3
Gohir.A10G171900 Gossypium hirsutum HOM05D006900 ORTHO05D008651 6.9e-37 159.8 197 50.3
Mapoly0078s0010 Marchantia polymorpha HOM05D006900 ORTHO05D008651 1.2e-36 159.1 118 61.9
AagrBONN_evm.TU.Sc2ySwM_368.516 Anthoceros agrestis HOM05D006900 ORTHO05D008651 4.7e-33 147.1 140 53.6
Pp3c1_20310 Physcomitrium patens HOM05D006900 ORTHO05D008651 1.5e-31 142.1 110 60.0
Gohir.A10G171950 Gossypium hirsutum HOM05D006900 ORTHO05D008651 7.0e-29 133.3 112 63.4
CSS0028196 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 9.1e-29 132.9 80 81.2
CBR_g12177 Chara braunii HOM05D006900 ORTHO05D008651 1.2e-28 132.5 212 37.7
SMO115G0152 Selaginella moellendorffii HOM05D006900 ORTHO05D008651 1.5e-28 132.1 110 60.0
CSS0035140 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 1.0e-27 129.4 80 78.8
Cpa.g.sc9.61 Carica papaya HOM05D006900 ORTHO05D008651 9.7e-23 112.8 198 43.4
Oeu032012.1 Olea europaea HOM05D006900 ORTHO05D008651 2.0e-20 105.1 98 57.1
MCO01G208 Micromonas commoda HOM05D006900 ORTHO05D008651 9.4e-18 96.3 120 40.0
Cre09.g416200 Chlamydomonas reinhardtii HOM05D006900 ORTHO05D008651 2.1e-17 95.1 145 37.2
SGA_v2.0_scaffold157G37400 Striga asiatica HOM05D006900 ORTHO05D008651 5.7e-15 87.0 196 38.3
Oeu032144.1 Olea europaea HOM05D006900 ORTHO05D008651 1.4e-13 82.4 71 95.8
PRCOL_00006040 Prasinoderma coloniale HOM05D001216 ORTHO05D005688 1.0e-11 76.3 112 36.6


User provided reference genes

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