Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 1.5e-124 449.5 222 100.0
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 1.9e-108 396.0 222 84.2
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 2.4e-106 389.0 223 83.9
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 9.0e-106 387.1 222 81.5
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 1.3e-104 383.3 213 85.4
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 1.3e-104 383.3 213 85.4
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 2.9e-104 382.1 222 81.5
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 2.9e-104 382.1 223 81.6
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 5.0e-104 381.3 222 82.4
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 6.5e-104 380.9 212 83.5
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 8.4e-104 380.6 223 81.6
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 1.2e-102 376.7 223 81.2
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 4.6e-102 374.8 225 80.9
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 6.1e-102 374.4 219 80.4
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 1.0e-101 373.6 224 79.5
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 1.0e-101 373.6 223 82.1
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 1.0e-101 373.6 250 74.8
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 1.3e-101 373.2 223 78.9
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 2.3e-101 372.5 223 80.3
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 3.9e-101 371.7 213 81.7
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 5.1e-101 371.3 213 80.3
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 5.1e-101 371.3 224 80.4
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 8.7e-101 370.5 223 78.5
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 1.1e-100 370.2 223 79.4
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 1.5e-100 369.8 260 71.9
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 1.5e-100 369.8 260 71.9
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 1.5e-100 369.8 217 80.2
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 2.5e-100 369.0 223 80.3
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 1.6e-99 366.3 223 77.6
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 2.8e-99 365.5 222 79.7
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 4.8e-99 364.8 224 80.4
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 8.2e-99 364.0 224 77.7
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 4.1e-98 361.7 223 75.3
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 4.1e-98 361.7 223 78.5
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 6.9e-98 360.9 223 78.5
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 5.9e-97 357.8 224 78.6
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 1.7e-96 356.3 241 74.3
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.7e-96 356.3 224 78.1
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 5.0e-96 354.8 224 77.7
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 5.0e-96 354.8 223 77.6
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 6.5e-96 354.4 223 74.0
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 8.5e-96 354.0 223 77.6
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 8.5e-96 354.0 216 75.0
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 1.2e-94 350.1 222 75.7
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 2.1e-94 349.4 222 73.4
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 7.9e-94 347.4 225 76.9
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 1.0e-93 347.1 222 75.7
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 1.4e-93 346.7 222 74.8
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 1.4e-93 346.7 223 75.3
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 1.4e-93 346.7 223 74.9
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 6.7e-93 344.4 223 78.0
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 6.7e-93 344.4 222 75.2
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 8.8e-93 344.0 223 75.3
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 4.3e-92 341.7 222 74.3
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 7.4e-92 340.9 222 73.9
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 7.4e-92 340.9 223 74.4
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 9.7e-92 340.5 213 76.1
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 3.7e-91 338.6 223 75.3
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 4.8e-91 338.2 222 73.0
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 8.2e-91 337.4 223 73.5
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 2.4e-90 335.9 213 74.6
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 3.1e-90 335.5 218 74.8
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 1.2e-89 333.6 265 64.9
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 1.5e-89 333.2 213 73.7
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 1.5e-89 333.2 213 74.2
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 1.5e-89 333.2 213 74.2
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 4.5e-89 331.6 222 70.7
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 4.5e-89 331.6 213 71.4
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 1.7e-88 329.7 213 73.2
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 6.5e-88 327.8 242 67.8
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 1.4e-87 326.6 213 70.4
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 5.5e-87 324.7 222 68.5
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 5.5e-87 324.7 215 75.3
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 9.4e-87 323.9 213 70.0
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 1.2e-86 323.6 215 69.3
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 2.1e-86 322.8 252 64.7
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 4.7e-86 321.6 202 74.8
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 4.7e-86 321.6 215 68.8
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.0e-85 320.5 213 67.6
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 3.9e-85 318.5 211 69.2
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 8.8e-85 317.4 208 73.1
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 2.0e-84 316.2 211 68.7
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 2.6e-84 315.8 208 72.1
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 3.3e-84 315.5 214 68.7
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 7.4e-84 314.3 217 67.3
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 7.4e-84 314.3 214 68.7
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 3.7e-83 312.0 222 65.8
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 1.4e-82 310.1 213 65.7
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 1.4e-82 310.1 213 65.7
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 1.4e-82 310.1 213 65.7
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 1.2e-81 307.0 222 63.1
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 1.6e-81 306.6 217 65.4
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 1.7e-80 303.1 213 65.3
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 1.7e-80 303.1 212 66.0
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 2.2e-80 302.8 215 64.7
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 8.5e-80 300.8 222 66.7
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 2.5e-79 299.3 180 77.8
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 9.4e-79 297.4 218 68.3
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 2.1e-78 296.2 202 66.8
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 3.6e-78 295.4 169 84.0
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 8.0e-78 294.3 215 64.2
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 8.2e-75 284.3 210 63.3
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 7.0e-74 281.2 213 61.5
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 9.1e-74 280.8 222 64.0
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 1.7e-72 276.6 170 80.6
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 5.2e-69 265.0 222 54.1
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 1.5e-68 263.5 168 76.2
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 1.5e-68 263.5 168 76.2
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 1.3e-67 260.4 222 51.8
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 2.2e-67 259.6 173 71.7
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 2.8e-67 259.2 222 52.7
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 2.4e-66 256.1 171 73.7
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 7.0e-66 254.6 224 60.3
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.0e-65 253.1 210 58.6
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.5e-65 251.9 185 63.8
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 6.5e-64 248.1 189 63.0
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 8.5e-64 247.7 193 64.2
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 7.2e-63 244.6 216 49.1
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 1.2e-62 243.8 207 53.1
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 2.7e-62 242.7 141 80.9
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 3.6e-62 242.3 136 85.3
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.7e-60 235.0 217 53.9
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 9.8e-60 234.2 219 53.9
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 8.3e-59 231.1 142 77.5
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 3.5e-57 225.7 169 62.1
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 5.0e-56 221.9 164 65.2
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 1.9e-55 219.9 150 72.0
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 3.3e-55 219.2 214 44.9
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 4.3e-55 218.8 211 50.2
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 1.2e-54 217.2 159 65.4
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 2.9e-51 206.1 166 59.0
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 6.4e-51 204.9 211 46.4
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 3.2e-50 202.6 187 49.2
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 5.4e-50 201.8 128 82.0
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.6e-49 200.3 143 65.7
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 1.0e-48 197.6 127 77.2
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.9e-47 193.4 203 47.8
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 7.3e-47 191.4 216 38.4
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.7e-46 188.7 161 56.5
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 1.8e-45 186.8 133 66.9
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 4.9e-43 178.7 172 55.8
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.3e-40 170.6 131 62.6
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.8e-38 162.9 131 61.1
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 8.1e-38 161.4 121 62.8
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.8e-36 155.2 131 55.7
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.1e-34 149.1 117 59.8
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 1.1e-29 134.4 99 62.6
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 7.1e-26 121.7 82 74.4
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 6.6e-24 115.2 91 63.7
Solyc10g055040.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 9.6e-23 111.3 143 44.1
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 2.4e-21 106.7 80 66.2
Rhsim03G0228900 Rhododendron simsii HOM05D001514 ORTHO05D005209 9.9e-20 101.3 52 82.7
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 1.4e-18 97.4 81 56.8
CAN.G1963.4 Capsicum annuum HOM05D001514 ORTHO05D005209 1.9e-18 97.1 67 64.2
Oeu055661.2 Olea europaea HOM05D001514 ORTHO05D005209 6.6e-16 88.6 52 71.2
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 4.8e-14 82.4 64 62.5
ECA233G2563 Erigeron canadensis HOM05D000517 ORTHO05D000751 6.2e-14 82.0 102 46.1
Solyc12g062270.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.4e-13 80.9 106 42.5
Cre11.g476900 Chlamydomonas reinhardtii HOM05D001514 ORTHO05D005209 1.7e-11 73.9 166 28.9
BcaC07g40291 Brassica carinata HOM05D001514 ORTHO05D005209 5.4e-10 68.9 55 61.8
C08p34050 Brassica napus HOM05D001514 ORTHO05D005209 5.4e-10 68.9 55 61.8
BolC8t51003H Brassica oleracea HOM05D001514 ORTHO05D005209 9.3e-10 68.2 54 63.0


User provided reference genes

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