Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G138849 Manihot esculenta HOM05D000283 ORTHO05D004861 1.7e-48 195.7 98 100.0
Manes.03G138852 Manihot esculenta HOM05D000283 ORTHO05D004861 5.5e-39 164.1 86 97.7
Manes.10G039500 Manihot esculenta HOM05D000283 ORTHO05D004861 1.3e-32 142.9 85 84.7
Manes.07G106200 Manihot esculenta HOM05D000283 ORTHO05D004861 8.2e-27 123.6 83 75.9
Lj8A93G63 Lonicera japonica HOM05D000283 ORTHO05D004861 2.4e-26 122.1 83 72.3
Potri.008G047300 Populus trichocarpa HOM05D000283 ORTHO05D004861 2.4e-26 122.1 83 74.7
Duzib114G0902 Durio zibethinus HOM05D000283 ORTHO05D004861 7.0e-26 120.6 86 73.3
Sabra08G0033500 Salix brachista HOM05D000283 ORTHO05D004861 1.2e-25 119.8 90 70.0
Gohir.A10G208700 Gossypium hirsutum HOM05D000283 ORTHO05D004861 2.6e-25 118.6 86 73.3
Sabra10G0165600 Salix brachista HOM05D000283 ORTHO05D004861 2.6e-25 118.6 84 72.6
Duzib106G0238 Durio zibethinus HOM05D000283 ORTHO05D004861 3.5e-25 118.2 86 72.1
Gohir.D10G217000 Gossypium hirsutum HOM05D000283 ORTHO05D004861 3.5e-25 118.2 86 73.3
TWI63G0514 Tripterygium wilfordii HOM05D000283 ORTHO05D004861 3.5e-25 118.2 85 68.2
Gorai.011G242600 Gossypium raimondii HOM05D000283 ORTHO05D004861 5.9e-25 117.5 85 72.9
Dinv31387 Davidia involucrata HOM05D000283 ORTHO05D004861 7.7e-25 117.1 81 70.4
Oeu050636.1 Olea europaea HOM05D000283 ORTHO05D004861 1.3e-24 116.3 83 72.3
Haze_16966 Corylus avellana HOM05D000283 ORTHO05D004861 1.7e-24 115.9 81 71.6
Gohir.D04G081100 Gossypium hirsutum HOM05D000283 ORTHO05D004861 1.7e-24 115.9 86 69.8
Gorai.012G092000 Gossypium raimondii HOM05D000283 ORTHO05D004861 1.7e-24 115.9 86 69.8
Lsat_1_v5_gn_9_66761 Lactuca sativa HOM05D000283 ORTHO05D004861 1.7e-24 115.9 81 74.1
Solyc04g010120.3 Solanum lycopersicum HOM05D000283 ORTHO05D004861 1.7e-24 115.9 85 69.4
Sopen04g005260 Solanum pennellii HOM05D000283 ORTHO05D004861 1.7e-24 115.9 85 69.4
Cpa.g.sc1.298 Carica papaya HOM05D000283 ORTHO05D004861 2.2e-24 115.5 83 69.9
Medtr1g116055 Medicago truncatula HOM05D000283 ORTHO05D004861 2.9e-24 115.2 81 71.6
QL08p057473 Quercus lobata HOM05D000283 ORTHO05D004861 2.9e-24 115.2 85 70.6
Prupe.2G222200 Prunus persica HOM05D000283 ORTHO05D004861 5.0e-24 114.4 82 73.2
Ca_11339_v3 Cicer arietinum L. HOM05D000283 ORTHO05D004861 1.1e-23 113.2 87 66.7
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 1.1e-23 113.2 83 67.5
Lj5g0010112 Lotus japonicus HOM05D004526 ORTHO05D004861 1.1e-23 113.2 81 70.4
TPR.G10404 Trifolium pratense HOM05D000283 ORTHO05D004861 1.1e-23 113.2 81 69.1
CSS0043771 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D004861 1.5e-23 112.8 81 69.1
AUR62025543 Chenopodium quinoa HOM05D000283 ORTHO05D004861 1.9e-23 112.5 83 67.5
CiPaw.01G279200 Carya illinoinensis HOM05D000283 ORTHO05D004861 2.5e-23 112.1 81 67.9
Cc02_g08700 Coffea canephora HOM05D000283 ORTHO05D004861 2.5e-23 112.1 82 70.7
Nn2g12826 Nelumbo nucifera HOM05D000283 ORTHO05D004861 2.5e-23 112.1 81 66.7
Hma1.2p1_0207F.1_g087990 Hydrangea macrophylla HOM05D000283 ORTHO05D004861 3.2e-23 111.7 82 69.5
MD01G1115200 Malus domestica HOM05D000283 ORTHO05D004861 3.2e-23 111.7 82 70.7
AUR62043534 Chenopodium quinoa HOM05D000283 ORTHO05D004861 4.2e-23 111.3 82 68.3
AUR62043801 Chenopodium quinoa HOM05D000283 ORTHO05D004861 4.2e-23 111.3 82 68.3
SGA_v2.0_scaffold426G51499 Striga asiatica HOM05D000283 ORTHO05D004861 4.2e-23 111.3 95 61.1
CSS0021401 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D004861 7.2e-23 110.5 83 68.7
Aa31LG10G10070 Aethionema arabicum HOM05D000283 ORTHO05D004861 9.4e-23 110.2 85 65.9
arahy.Tifrunner.gnm1.ann1.5B7TYX Arachis hypogaea HOM05D000283 ORTHO05D004861 9.4e-23 110.2 78 71.8
CSS0031096 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D004861 9.4e-23 110.2 80 68.8
CSS0033958 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D004861 9.4e-23 110.2 80 68.8
Nitab4.5_0006737g0080 Nicotiana tabacum HOM05D000283 ORTHO05D004861 9.4e-23 110.2 88 68.2
GSVIVG01032634001 Vitis vinifera HOM05D000283 ORTHO05D004861 1.2e-22 109.8 81 66.7
DCAR_019151 Daucus carota HOM05D000283 ORTHO05D004861 1.6e-22 109.4 81 67.9
DCAR_019154 Daucus carota HOM05D000283 ORTHO05D004861 1.6e-22 109.4 81 67.9
Glyma.10G292551 Glycine max HOM05D000283 ORTHO05D004861 1.6e-22 109.4 81 66.7
Actinidia13845 Actinidia chinensis HOM05D000283 ORTHO05D004861 2.1e-22 109.0 82 69.5
A04p04850 Brassica napus HOM05D000283 ORTHO05D004861 2.1e-22 109.0 85 64.7
BraA04t16198Z Brassica rapa HOM05D000283 ORTHO05D004861 2.1e-22 109.0 85 64.7
MD07G1183500 Malus domestica HOM05D000283 ORTHO05D004861 2.1e-22 109.0 82 68.3
MSTRG.8232 Avicennia marina HOM05D000283 ORTHO05D004861 2.7e-22 108.6 79 69.6
Ciclev10031660m.g Citrus clementina HOM05D000283 ORTHO05D004861 2.7e-22 108.6 83 66.3
Actinidia29196 Actinidia chinensis HOM05D000283 ORTHO05D004861 3.6e-22 108.2 81 70.4
CARHR165090 Cardamine hirsuta HOM05D000283 ORTHO05D004861 3.6e-22 108.2 85 67.1
Cfa001563 Carpinus fangiana HOM05D000283 ORTHO05D004861 4.7e-22 107.8 81 70.4
Carub.0005s2170 Capsella rubella HOM05D000283 ORTHO05D004861 6.1e-22 107.5 85 64.7
arahy.Tifrunner.gnm1.ann1.M3B011 Arachis hypogaea HOM05D000283 ORTHO05D004861 8.0e-22 107.1 77 71.4
Glyma.20G242800 Glycine max HOM05D000283 ORTHO05D004861 8.0e-22 107.1 80 66.2
Sp5g07350 Schrenkiella parvula HOM05D000283 ORTHO05D004861 8.0e-22 107.1 85 64.7
CSS0032920 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D004861 1.0e-21 106.7 84 65.5
Thhalv10010415m.g Eutrema salsugineum HOM05D000283 ORTHO05D004861 1.0e-21 106.7 85 64.7
SalBow6G5798 Salvia bowleyana HOM05D000283 ORTHO05D004861 1.0e-21 106.7 81 65.4
THA.LOC104809995 Tarenaya hassleriana HOM05D000283 ORTHO05D004861 1.0e-21 106.7 80 67.5
Hma1.2p1_0348F.1_g131730 Hydrangea macrophylla HOM05D000283 ORTHO05D004861 1.4e-21 106.3 88 63.6
Psat6g239360 Pisum sativum HOM05D000283 ORTHO05D004861 1.4e-21 106.3 81 64.2
BcaC02g09720 Brassica carinata HOM05D000283 ORTHO05D004861 1.8e-21 105.9 85 63.5
C04p37350 Brassica napus HOM05D000283 ORTHO05D004861 1.8e-21 105.9 85 63.5
BolC4t25299H Brassica oleracea HOM05D000283 ORTHO05D004861 1.8e-21 105.9 85 63.5
VMungo0720G1844 Vigna mungo HOM05D000283 ORTHO05D004861 2.3e-21 105.5 81 66.7
CANSAT56G1270 Cannabis sativa HOM05D000283 ORTHO05D004861 3.0e-21 105.1 82 64.6
A09p48090 Brassica napus HOM05D000283 ORTHO05D004861 4.0e-21 104.8 85 63.5
BcaC07g39830 Brassica carinata HOM05D000283 ORTHO05D004861 5.2e-21 104.4 85 62.4
Phvul.007G007400 Phaseolus vulgaris HOM05D000283 ORTHO05D004861 5.2e-21 104.4 81 65.4
FAN06G3181 Fragaria x ananassa HOM05D000283 ORTHO05D004861 6.7e-21 104.0 82 67.1
HanXRQChr15g0496791 Helianthus annuus HOM05D000283 ORTHO05D004861 6.7e-21 104.0 80 66.2
Hund22437 Selenicereus undatus HOM05D000283 ORTHO05D004861 6.7e-21 104.0 79 67.1
BraA09t40263Z Brassica rapa HOM05D000283 ORTHO05D004861 8.8e-21 103.6 85 62.4
FvH4_7g20680 Fragaria vesca HOM05D000283 ORTHO05D004861 8.8e-21 103.6 82 67.1
FAN06G3682 Fragaria x ananassa HOM05D000283 ORTHO05D004861 8.8e-21 103.6 82 67.1
MBI05_g05301_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D004861 8.8e-21 103.6 95 58.9
Rhsim09G0155700 Rhododendron simsii HOM05D000283 ORTHO05D004861 8.8e-21 103.6 81 67.9
Thecc.10G063500 Theobroma cacao HOM05D000283 ORTHO05D004861 1.1e-20 103.2 79 68.4
COL.COLO4_05799 Corchorus olitorius HOM05D000283 ORTHO05D004861 1.5e-20 102.8 80 67.5
BolC8t50654H Brassica oleracea HOM05D000283 ORTHO05D004861 2.0e-20 102.4 85 61.2
TAR633G2156 Trochodendron aralioides HOM05D000283 ORTHO05D004861 2.6e-20 102.1 81 61.7
Sc20g0002340 Simmondsia chinensis HOM05D000283 ORTHO05D004861 3.3e-20 101.7 80 63.8
Eucgr.J01144 Eucalyptus grandis HOM05D000283 ORTHO05D004861 4.4e-20 101.3 78 65.4
PGR044G2742 Punica granatum HOM05D000283 ORTHO05D004861 5.7e-20 100.9 77 67.5
TAR623G1321 Trochodendron aralioides HOM05D000283 ORTHO05D004861 5.7e-20 100.9 83 56.6
RcHm_v2.0_Chr1g0364711 Rosa chinensis HOM05D000283 ORTHO05D004861 7.4e-20 100.5 82 65.9
ATR0810G097 Amborella trichopoda HOM05D000283 ORTHO05D004861 9.7e-20 100.1 81 56.8
ClCG02G013690 Citrullus lanatus HOM05D000283 ORTHO05D004861 1.3e-19 99.8 84 63.1
Migut.F01536 Erythranthe guttata HOM05D000283 ORTHO05D004861 1.3e-19 99.8 81 65.4
FAN10G1136 Fragaria x ananassa HOM05D000283 ORTHO05D004861 1.7e-19 99.4 82 64.6
Sed0024713 Sechium edule HOM05D000283 ORTHO05D004861 1.7e-19 99.4 80 65.0
AL5G36190 Arabidopsis lyrata HOM05D000283 ORTHO05D004861 2.2e-19 99.0 81 60.5
C08p30310 Brassica napus HOM05D000283 ORTHO05D004861 2.2e-19 99.0 85 58.8
FAN03G0565 Fragaria x ananassa HOM05D000283 ORTHO05D004861 2.2e-19 99.0 82 64.6
Lalb_Chr21g0307121 Lupinus albus HOM05D000283 ORTHO05D004861 2.2e-19 99.0 75 64.0
MELO3C011710.2 Cucumis melo HOM05D000283 ORTHO05D004861 2.8e-19 98.6 84 63.1
ECA232G1460 Erigeron canadensis HOM05D000283 ORTHO05D004861 2.8e-19 98.6 76 67.1
FAN01G0258 Fragaria x ananassa HOM05D000283 ORTHO05D004861 2.8e-19 98.6 82 63.4
FAN01G0780 Fragaria x ananassa HOM05D000283 ORTHO05D004861 2.8e-19 98.6 82 63.4
PSO384G1824 Papaver somniferum HOM05D000283 ORTHO05D004861 2.8e-19 98.6 83 60.2
PSO699G0010 Papaver somniferum HOM05D000283 ORTHO05D004861 2.8e-19 98.6 83 60.2
AT3G55070 Arabidopsis thaliana HOM05D000283 ORTHO05D004861 4.8e-19 97.8 80 60.0
CiPaw.02G178300 Carya illinoinensis HOM05D000283 ORTHO05D004861 4.8e-19 97.8 81 59.3
MBI02_g23397_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D004861 4.8e-19 97.8 92 55.4
BcaB01g00131 Brassica carinata HOM05D000283 ORTHO05D004861 6.3e-19 97.4 86 60.5
Lalb_Chr02g0143841 Lupinus albus HOM05D000283 ORTHO05D004861 6.3e-19 97.4 79 62.0
HPP92_016703 Vanilla planifolia HOM05D000283 ORTHO05D004861 6.3e-19 97.4 78 62.8
CsaV3_5G006500 Cucumis sativus L. HOM05D000283 ORTHO05D004861 1.1e-18 96.7 84 61.9
HanXRQChr09g0246601 Helianthus annuus HOM05D000283 ORTHO05D004861 3.1e-18 95.1 76 67.1
BcaB04g19121 Brassica carinata HOM05D000283 ORTHO05D004861 4.1e-18 94.7 87 58.6
Sed0007781 Sechium edule HOM05D000283 ORTHO05D004861 4.1e-18 94.7 80 65.0
Atru.BG.269.p Acer truncatum HOM05D000283 ORTHO05D004861 7.0e-18 94.0 73 68.5
Nitab4.5_0007221g0020 Nicotiana tabacum HOM05D000283 ORTHO05D004861 7.0e-18 94.0 86 61.6
Aqoxy4G03100 Aquilegia oxysepala HOM05D000283 ORTHO05D004861 1.2e-17 93.2 81 55.6
CDE11G0382 Ceratophyllum demersum HOM05D000283 ORTHO05D004861 1.2e-17 93.2 80 53.8
SHI28210 Sapria himalayana HOM05D000002 ORTHO05D000001 1.2e-17 93.2 83 59.0
EL10Ac2g03514 Beta vulgaris HOM05D000283 ORTHO05D004861 2.6e-17 92.0 74 62.2
Peaxi162Scf00135g00213 Petunia axillaris HOM05D000283 ORTHO05D004861 5.9e-17 90.9 72 68.1
unitig_0.g2403 Utricularia gibba HOM05D000283 ORTHO05D004861 1.7e-16 89.4 80 56.2
Mapoly0093s0006 Marchantia polymorpha HOM05D000283 ORTHO05D004861 2.9e-16 88.6 70 58.6
BcaB02g07699 Brassica carinata HOM05D000283 ORTHO05D004861 3.8e-16 88.2 76 56.6
BcaB05g23770 Brassica carinata HOM05D000283 ORTHO05D004861 3.8e-16 88.2 87 56.3
Gohir.A05G343200 Gossypium hirsutum HOM05D000283 ORTHO05D004861 8.5e-16 87.0 66 66.7
SEGI_26055 Sequoiadendron giganteum HOM05D000283 ORTHO05D004861 8.5e-16 87.0 83 53.0
CAN.G786.36 Capsicum annuum HOM05D000283 ORTHO05D004861 1.1e-15 86.7 73 65.8
Pp3c8_20500 Physcomitrium patens HOM05D000283 ORTHO05D004861 4.2e-15 84.7 72 56.9
Pp3c24_18980 Physcomitrium patens HOM05D000283 ORTHO05D004861 1.6e-14 82.8 72 54.2
SMO119G0426 Selaginella moellendorffii HOM05D000283 ORTHO05D004861 8.0e-14 80.5 69 55.1
AagrBONN_evm.TU.Sc2ySwM_228.2194 Anthoceros agrestis HOM05D000283 ORTHO05D004861 1.2e-12 76.6 81 44.4
Actinidia38228 Actinidia chinensis HOM05D000283 ORTHO05D004861 2.8e-11 72.0 90 41.1
SMO111G0010 Selaginella moellendorffii HOM05D000283 ORTHO05D004861 7.0e-10 67.4 80 40.0
Zm00001eb282460 Zea mays HOM05D000283 ORTHO05D004861 1.3e-08 63.2 80 42.5
Ah.10g033170 Amaranthus hybridus HOM05D000283 ORTHO05D004861 5.0e-08 61.2 76 42.1
BcaC08g44722 Brassica carinata HOM05D000283 ORTHO05D032771 5.0e-08 61.2 46 65.2
Os05g0160100 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D004861 1.9e-07 59.3 83 39.8
Nn2g10558 Nelumbo nucifera HOM05D000283 ORTHO05D004861 7.2e-07 57.4 68 45.6


User provided reference genes

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