Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G212060 Manihot esculenta HOM05D003112 ORTHO05D003660 5.7e-74 280.8 139 100.0
Manes.03G158200 Manihot esculenta HOM05D003112 ORTHO05D003660 5.2e-43 177.9 90 93.3
DCAR_024295 Daucus carota HOM05D003112 ORTHO05D003660 1.2e-42 176.8 90 92.2
RcHm_v2.0_Chr4g0395521 Rosa chinensis HOM05D003112 ORTHO05D003660 2.0e-42 176.0 90 92.2
FAN17G0040 Fragaria x ananassa HOM05D003112 ORTHO05D003660 2.6e-42 175.6 90 91.1
Lj3C639T4 Lonicera japonica HOM05D003112 ORTHO05D003660 2.6e-42 175.6 90 91.1
CSS0035703 Camellia sinensis var. sinensis HOM05D003112 ORTHO05D003660 5.8e-42 174.5 90 92.2
Hma1.2p1_0112F.1_g054810 Hydrangea macrophylla HOM05D003112 ORTHO05D003660 5.8e-42 174.5 90 92.2
SGA_v2.0_scaffold31G12624 Striga asiatica HOM05D003112 ORTHO05D003660 5.8e-42 174.5 90 91.1
Cc03_g06410 Coffea canephora HOM05D003112 ORTHO05D003660 7.5e-42 174.1 90 91.1
COL.COLO4_15976 Corchorus olitorius HOM05D003112 ORTHO05D003660 7.5e-42 174.1 90 91.1
ECA248G0532 Erigeron canadensis HOM05D003112 ORTHO05D003660 7.5e-42 174.1 90 90.0
Migut.G00571 Erythranthe guttata HOM05D003112 ORTHO05D003660 7.5e-42 174.1 90 91.1
Lsat_1_v5_gn_2_41240 Lactuca sativa HOM05D003112 ORTHO05D003660 7.5e-42 174.1 90 91.1
MD16G1227200 Malus domestica HOM05D003112 ORTHO05D003660 7.5e-42 174.1 90 91.1
Prupe.1G049300 Prunus persica HOM05D003112 ORTHO05D003660 7.5e-42 174.1 90 91.1
SalBow2G1480 Salvia bowleyana HOM05D003112 ORTHO05D003660 7.5e-42 174.1 90 91.1
CAN.G638.35 Capsicum annuum HOM05D003112 ORTHO05D003660 1.3e-41 173.3 90 90.0
Nitab4.5_0002210g0050 Nicotiana tabacum HOM05D003112 ORTHO05D003660 1.3e-41 173.3 90 90.0
Potri.008G172500 Populus trichocarpa HOM05D003112 ORTHO05D003660 1.3e-41 173.3 90 90.0
Solyc03g005730.4 Solanum lycopersicum HOM05D003112 ORTHO05D003660 1.3e-41 173.3 90 90.0
Sopen03g001740 Solanum pennellii HOM05D003112 ORTHO05D003660 1.3e-41 173.3 90 90.0
PGSC0003DMG400013459 Solanum tuberosum HOM05D003112 ORTHO05D003660 1.3e-41 173.3 90 90.0
Dinv27120 Davidia involucrata HOM05D003112 ORTHO05D003660 1.7e-41 172.9 90 90.0
Duzib151G1146 Durio zibethinus HOM05D003112 ORTHO05D003660 1.7e-41 172.9 90 91.1
FvH4_4g04720 Fragaria vesca HOM05D003112 ORTHO05D003660 1.7e-41 172.9 90 90.0
FAN12G3900 Fragaria x ananassa HOM05D003112 ORTHO05D003660 1.7e-41 172.9 90 90.0
FAN22G1113 Fragaria x ananassa HOM05D003112 ORTHO05D003660 1.7e-41 172.9 90 90.0
Phvul.007G232000 Phaseolus vulgaris HOM05D003112 ORTHO05D003660 1.7e-41 172.9 90 90.0
RcHm_v2.0_Chr4g0395531 Rosa chinensis HOM05D003112 ORTHO05D003660 1.7e-41 172.9 90 90.0
CiPaw.02G106400 Carya illinoinensis HOM05D003112 ORTHO05D003660 2.2e-41 172.6 90 91.1
DCAR_027353 Daucus carota HOM05D003112 ORTHO05D003660 2.2e-41 172.6 106 82.1
Nitab4.5_0001041g0170 Nicotiana tabacum HOM05D003112 ORTHO05D003660 2.2e-41 172.6 90 90.0
Peaxi162Scf01044g00224 Petunia axillaris HOM05D003112 ORTHO05D003660 2.2e-41 172.6 90 88.9
SalBow3G3468 Salvia bowleyana HOM05D003112 ORTHO05D003660 2.2e-41 172.6 120 72.5
TPR.G23961 Trifolium pratense HOM05D003112 ORTHO05D003660 2.2e-41 172.6 90 91.1
TWI73G0266 Tripterygium wilfordii HOM05D003112 ORTHO05D003660 2.2e-41 172.6 90 91.1
MD13G1222900 Malus domestica HOM05D003112 ORTHO05D003660 2.9e-41 172.2 90 90.0
arahy.Tifrunner.gnm1.ann1.L114HI Arachis hypogaea HOM05D003112 ORTHO05D003660 3.7e-41 171.8 90 90.0
arahy.Tifrunner.gnm1.ann1.RMYF3V Arachis hypogaea HOM05D003112 ORTHO05D003660 3.7e-41 171.8 90 90.0
Ciclev10004776m.g Citrus clementina HOM05D003112 ORTHO05D003660 3.7e-41 171.8 90 88.9
HanXRQChr14g0434771 Helianthus annuus HOM05D003112 ORTHO05D003660 3.7e-41 171.8 90 88.9
Potri.010G065100 Populus trichocarpa HOM05D003112 ORTHO05D003660 3.7e-41 171.8 90 90.0
Sabra10G0042000 Salix brachista HOM05D003112 ORTHO05D003660 3.7e-41 171.8 90 90.0
TWI09G1061 Tripterygium wilfordii HOM05D003112 ORTHO05D003660 3.7e-41 171.8 90 91.1
VMungo0720G0086 Vigna mungo HOM05D003112 ORTHO05D003660 3.7e-41 171.8 90 88.9
GSVIVG01029978001 Vitis vinifera HOM05D003112 ORTHO05D003660 3.7e-41 171.8 90 88.9
Glyma.14G217300 Glycine max HOM05D003112 ORTHO05D003660 4.9e-41 171.4 90 88.9
Glyma.17G256102 Glycine max HOM05D003112 ORTHO05D003660 4.9e-41 171.4 90 88.9
Gohir.A09G227100 Gossypium hirsutum HOM05D003112 ORTHO05D003660 4.9e-41 171.4 90 90.0
Gohir.D09G228100 Gossypium hirsutum HOM05D003112 ORTHO05D003660 4.9e-41 171.4 90 90.0
Gorai.006G250800 Gossypium raimondii HOM05D003112 ORTHO05D003660 4.9e-41 171.4 90 90.0
Nitab4.5_0002613g0050 Nicotiana tabacum HOM05D003112 ORTHO05D003660 4.9e-41 171.4 103 81.6
Nitab4.5_0005154g0020 Nicotiana tabacum HOM05D003112 ORTHO05D003660 4.9e-41 171.4 90 88.9
Rhsim04G0171200 Rhododendron simsii HOM05D003112 ORTHO05D003660 4.9e-41 171.4 88 92.0
SalBow3G1186 Salvia bowleyana HOM05D003112 ORTHO05D003660 4.9e-41 171.4 120 71.7
Thecc.04G265900 Theobroma cacao HOM05D003112 ORTHO05D003660 4.9e-41 171.4 90 90.0
Atru.chr4.1907 Acer truncatum HOM05D003112 ORTHO05D003660 6.4e-41 171.0 90 90.0
MSTRG.24656 Avicennia marina HOM05D003112 ORTHO05D003660 6.4e-41 171.0 90 88.9
Dinv29798 Davidia involucrata HOM05D003112 ORTHO05D003660 6.4e-41 171.0 90 88.9
HanXRQChr01g0023041 Helianthus annuus HOM05D003112 ORTHO05D003660 6.4e-41 171.0 90 88.9
ATR0787G024 Amborella trichopoda HOM05D003112 ORTHO05D003660 8.3e-41 170.6 90 88.9
Peaxi162Scf00242g01317 Petunia axillaris HOM05D003112 ORTHO05D003660 8.3e-41 170.6 90 87.8
QL06p021218 Quercus lobata HOM05D003112 ORTHO05D003660 8.3e-41 170.6 90 90.0
Cfa014790 Carpinus fangiana HOM05D003112 ORTHO05D003660 1.1e-40 170.2 90 90.0
Gorai.006G073400 Gossypium raimondii HOM05D003112 ORTHO05D003660 1.1e-40 170.2 90 88.9
Lsat_1_v5_gn_1_75540 Lactuca sativa HOM05D003112 ORTHO05D003660 1.1e-40 170.2 88 90.9
Lj3A639T17 Lonicera japonica HOM05D003112 ORTHO05D003660 1.1e-40 170.2 94 85.1
Manes.03G158100 Manihot esculenta HOM05D003112 ORTHO05D003660 1.1e-40 170.2 90 87.8
Manes.15G046300 Manihot esculenta HOM05D003112 ORTHO05D003660 1.1e-40 170.2 102 79.4
Sabra08G0131800 Salix brachista HOM05D003112 ORTHO05D003660 1.1e-40 170.2 90 88.9
THA.LOC104808742 Tarenaya hassleriana HOM05D003112 ORTHO05D003660 1.1e-40 170.2 90 87.8
THA.LOC104821631 Tarenaya hassleriana HOM05D003112 ORTHO05D003660 1.1e-40 170.2 90 87.8
CANSAT78G1988 Cannabis sativa HOM05D003112 ORTHO05D003660 1.4e-40 169.9 90 87.8
CiPaw.01G177200 Carya illinoinensis HOM05D003112 ORTHO05D003660 1.4e-40 169.9 90 88.9
AUR62019663 Chenopodium quinoa HOM05D003112 ORTHO05D003660 1.4e-40 169.9 90 87.8
COL.COLO4_15975 Corchorus olitorius HOM05D003112 ORTHO05D003660 1.4e-40 169.9 90 87.8
Gohir.D09G059100 Gossypium hirsutum HOM05D003112 ORTHO05D003660 1.4e-40 169.9 89 89.9
TAR633G1760 Trochodendron aralioides HOM05D003112 ORTHO05D003660 1.4e-40 169.9 90 87.8
Actinidia14607 Actinidia chinensis HOM05D003112 ORTHO05D003660 2.4e-40 169.1 108 75.9
Cfa014789 Carpinus fangiana HOM05D003112 ORTHO05D003660 2.4e-40 169.1 90 88.9
HanXRQChr14g0434761 Helianthus annuus HOM05D003112 ORTHO05D003660 2.4e-40 169.1 90 86.7
Lj6g0010145 Lotus japonicus HOM05D003112 ORTHO05D003660 2.4e-40 169.1 90 88.9
Medtr1g045750 Medicago truncatula HOM05D003112 ORTHO05D003660 2.4e-40 169.1 90 88.9
PGR004G0234 Punica granatum HOM05D003112 ORTHO05D003660 2.4e-40 169.1 90 87.8
GSVIVG01027922001 Vitis vinifera HOM05D003112 ORTHO05D003660 2.4e-40 169.1 90 87.8
Ah.04g163950 Amaranthus hybridus HOM05D003112 ORTHO05D003660 3.2e-40 168.7 90 87.8
EL10Ac3g06677 Beta vulgaris HOM05D003112 ORTHO05D003660 3.2e-40 168.7 90 86.7
ClCG09G012580 Citrullus lanatus HOM05D003112 ORTHO05D003660 3.2e-40 168.7 90 87.8
MELO3C003344.2 Cucumis melo HOM05D003112 ORTHO05D003660 3.2e-40 168.7 90 87.8
ECA248G1257 Erigeron canadensis HOM05D003112 ORTHO05D003660 3.2e-40 168.7 90 87.8
Lalb_Chr11g0067221 Lupinus albus HOM05D003112 ORTHO05D003660 3.2e-40 168.7 108 75.9
Atru.chr4.1904 Acer truncatum HOM05D003112 ORTHO05D003660 4.1e-40 168.3 90 87.8
Cpa.g.sc59.7 Carica papaya HOM05D003112 ORTHO05D003660 4.1e-40 168.3 90 87.8
CsaV3_3G049730 Cucumis sativus L. HOM05D003112 ORTHO05D003660 4.1e-40 168.3 90 86.7
Eucgr.H02913 Eucalyptus grandis HOM05D003112 ORTHO05D003660 4.1e-40 168.3 90 86.7
Hund24873 Selenicereus undatus HOM05D003112 ORTHO05D003660 4.1e-40 168.3 102 76.5
Lalb_Chr23g0271781 Lupinus albus HOM05D003112 ORTHO05D003660 5.4e-40 167.9 89 88.8
Sc19g0005580 Simmondsia chinensis HOM05D003112 ORTHO05D003660 5.4e-40 167.9 90 86.7
Ca_11883_v3 Cicer arietinum L. HOM05D003112 ORTHO05D003660 7.0e-40 167.5 108 75.9
Nitab4.5_0000592g0470 Nicotiana tabacum HOM05D003112 ORTHO05D003660 7.0e-40 167.5 105 78.1
Psat6g107560 Pisum sativum HOM05D003112 ORTHO05D003660 7.0e-40 167.5 90 87.8
Sed0016595 Sechium edule HOM05D003112 ORTHO05D003660 7.0e-40 167.5 90 86.7
Gohir.A09G059800 Gossypium hirsutum HOM05D003112 ORTHO05D003660 9.2e-40 167.2 90 87.8
Gohir.D09G059000 Gossypium hirsutum HOM05D003112 ORTHO05D003660 9.2e-40 167.2 90 87.8
Nn3g19795 Nelumbo nucifera HOM05D003112 ORTHO05D003660 9.2e-40 167.2 90 85.6
CARHR219070 Cardamine hirsuta HOM05D003112 ORTHO05D003660 1.2e-39 166.8 90 85.6
CDE09G0390 Ceratophyllum demersum HOM05D003112 ORTHO05D003660 1.2e-39 166.8 90 86.7
Duzib151G0757 Durio zibethinus HOM05D003112 ORTHO05D003660 1.2e-39 166.8 90 87.8
Gohir.A09G059700 Gossypium hirsutum HOM05D003112 ORTHO05D003660 1.2e-39 166.8 89 88.8
AL9U10130 Arabidopsis lyrata HOM05D003112 ORTHO05D003660 1.6e-39 166.4 90 85.6
AT4G13430 Arabidopsis thaliana HOM05D003112 ORTHO05D003660 1.6e-39 166.4 90 85.6
BcaB04g17692 Brassica carinata HOM05D003112 ORTHO05D003660 1.6e-39 166.4 90 85.6
BcaC02g09423 Brassica carinata HOM05D003112 ORTHO05D003660 1.6e-39 166.4 90 85.6
BcaC07g37364 Brassica carinata HOM05D003112 ORTHO05D003660 1.6e-39 166.4 90 85.6
A04p08700 Brassica napus HOM05D003112 ORTHO05D003660 1.6e-39 166.4 90 85.6
C08p08140 Brassica napus HOM05D003112 ORTHO05D003660 1.6e-39 166.4 90 85.6
Thhalv10024960m.g Eutrema salsugineum HOM05D003112 ORTHO05D003660 1.6e-39 166.4 90 85.6
Nitab4.5_0001041g0160 Nicotiana tabacum HOM05D003112 ORTHO05D003660 1.6e-39 166.4 90 87.8
Aa31LG7G1680 Aethionema arabicum HOM05D003112 ORTHO05D003660 2.0e-39 166.0 90 85.6
BolC8t47666H Brassica oleracea HOM05D003112 ORTHO05D003660 2.0e-39 166.0 90 84.4
BraA04t16563Z Brassica rapa HOM05D003112 ORTHO05D003660 2.0e-39 166.0 90 84.4
CAN.G524.11 Capsicum annuum HOM05D003112 ORTHO05D003660 2.0e-39 166.0 90 83.3
Sopen09g033880 Solanum pennellii HOM05D003112 ORTHO05D003660 2.0e-39 166.0 90 83.3
Sp7g10990 Schrenkiella parvula HOM05D003112 ORTHO05D003660 2.7e-39 165.6 90 84.4
Zm00001eb208760 Zea mays HOM05D003112 ORTHO05D003660 2.7e-39 165.6 90 86.7
Aqoxy5G00139 Aquilegia oxysepala HOM05D003112 ORTHO05D003660 3.5e-39 165.2 90 85.6
Cre01.g004500 Chlamydomonas reinhardtii HOM05D003112 ORTHO05D003660 3.5e-39 165.2 90 82.2
Gorai.006G073300 Gossypium raimondii HOM05D003112 ORTHO05D003660 3.5e-39 165.2 90 86.7
Solyc09g090900.4 Solanum lycopersicum HOM05D003112 ORTHO05D003660 3.5e-39 165.2 108 72.2
Zm00001eb230780 Zea mays HOM05D003112 ORTHO05D003660 3.5e-39 165.2 90 85.6
C04p42460 Brassica napus HOM05D003112 ORTHO05D003660 4.6e-39 164.9 89 85.4
BolC4t25824H Brassica oleracea HOM05D003112 ORTHO05D003660 4.6e-39 164.9 89 85.4
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 4.6e-39 164.9 90 85.6
Os02g0125100 Oryza sativa ssp. japonica HOM05D003112 ORTHO05D003660 4.6e-39 164.9 90 84.4
Pp3c4_11270 Physcomitrium patens HOM05D003112 ORTHO05D003660 4.6e-39 164.9 90 83.3
Thecc.04G265800 Theobroma cacao HOM05D003112 ORTHO05D003660 4.6e-39 164.9 90 86.7
ATR0787G215 Amborella trichopoda HOM05D003112 ORTHO05D003660 7.8e-39 164.1 90 85.6
Carub.0007s2912 Capsella rubella HOM05D003112 ORTHO05D003660 1.0e-38 163.7 90 83.3
Nn1g02981 Nelumbo nucifera HOM05D003112 ORTHO05D003660 1.0e-38 163.7 90 85.6
PSO764G0258 Papaver somniferum HOM05D003112 ORTHO05D003660 1.0e-38 163.7 90 84.4
PSO832G1505 Papaver somniferum HOM05D003112 ORTHO05D003660 1.0e-38 163.7 90 84.4
SMO347G0250 Selaginella moellendorffii HOM05D003112 ORTHO05D003660 1.0e-38 163.7 90 83.3
SEGI_32008 Sequoiadendron giganteum HOM05D003112 ORTHO05D003660 1.0e-38 163.7 90 83.3
SHI00769 Sapria himalayana HOM05D003112 ORTHO05D003660 1.7e-38 162.9 90 84.4
AagrBONN_evm.TU.Sc2ySwM_368.2484 Anthoceros agrestis HOM05D003112 ORTHO05D003660 3.9e-38 161.8 90 81.1
A08p06810 Brassica napus HOM05D003112 ORTHO05D003660 3.9e-38 161.8 91 84.6
Mapoly0081s0061 Marchantia polymorpha HOM05D003112 ORTHO05D003660 3.9e-38 161.8 90 82.2
BraA08t32699Z Brassica rapa HOM05D003112 ORTHO05D003660 5.0e-38 161.4 91 83.5
TPR.G18564 Trifolium pratense HOM05D003112 ORTHO05D003660 8.6e-38 160.6 95 78.9
Lj5g0009083 Lotus japonicus HOM05D003112 ORTHO05D003660 1.1e-37 160.2 90 82.2
CBR_g53549 Chara braunii HOM05D003112 ORTHO05D003660 1.9e-37 159.5 90 80.0
arahy.Tifrunner.gnm1.ann1.K9LPZT Arachis hypogaea HOM05D003112 ORTHO05D003660 3.3e-37 158.7 90 81.1
AUR62013948 Chenopodium quinoa HOM05D003112 ORTHO05D003660 3.3e-37 158.7 96 79.2
VMungo0720G2760 Vigna mungo HOM05D003112 ORTHO05D003660 5.6e-37 157.9 90 81.1
Haze_11466 Corylus avellana HOM05D003112 ORTHO05D003660 1.2e-36 156.8 114 71.1
Lj3A640T23 Lonicera japonica HOM05D003112 ORTHO05D003660 1.2e-36 156.8 107 72.9
Dinv19267 Davidia involucrata HOM05D003112 ORTHO05D003660 2.1e-36 156.0 90 80.0
Glyma.20G199600 Glycine max HOM05D003112 ORTHO05D003660 2.1e-36 156.0 90 80.0
Medtr1g073200 Medicago truncatula HOM05D003112 ORTHO05D003660 2.8e-36 155.6 90 78.9
CSS0008180 Camellia sinensis var. sinensis HOM05D003112 ORTHO05D003660 8.9e-35 150.6 117 65.8
Oeu061871.1 Olea europaea HOM05D003112 ORTHO05D003660 7.8e-31 137.5 174 47.1
Peaxi162Scf01044g00110 Petunia axillaris HOM05D003112 ORTHO05D003660 4.7e-28 128.3 98 65.3
TAR362G0704 Trochodendron aralioides HOM05D003112 ORTHO05D003660 1.4e-27 126.7 65 89.2
vmacro08560 Vaccinium macrocarpon HOM05D003112 ORTHO05D003660 3.1e-27 125.6 64 89.1
HPP92_026397 Vanilla planifolia HOM05D003112 ORTHO05D003660 5.2e-27 124.8 65 86.2
MD13G1222700 Malus domestica HOM05D003112 ORTHO05D003660 5.8e-26 121.3 65 83.1
arahy.Tifrunner.gnm1.ann1.F7U1GP Arachis hypogaea HOM05D003112 ORTHO05D003660 9.9e-26 120.6 90 66.7
Psat3g068240 Pisum sativum HOM05D003112 ORTHO05D003660 2.2e-25 119.4 63 87.3
SMO235G0067 Selaginella moellendorffii HOM05D003112 ORTHO05D003660 5.4e-24 114.8 64 79.7
Actinidia12407 Actinidia chinensis HOM05D003112 ORTHO05D003660 3.3e-21 105.5 55 87.3
Ah.02g118940 Amaranthus hybridus HOM05D003112 ORTHO05D005595 2.1e-20 102.8 64 73.4
BcaC04g23416 Brassica carinata HOM05D003112 ORTHO05D003660 1.3e-17 93.6 64 65.6
C09p08570 Brassica napus HOM05D003112 ORTHO05D003660 1.3e-17 93.6 64 65.6
BolC9t53766H Brassica oleracea HOM05D003112 ORTHO05D003660 1.3e-17 93.6 64 65.6
Rhsim07G0000200 Rhododendron simsii HOM05D003112 ORTHO05D003660 1.7e-17 93.2 77 64.9
Psat2g156240 Pisum sativum HOM05D000602 ORTHO05D001147 2.2e-17 92.8 77 63.6
Psat7g116160 Pisum sativum HOM05D002786 ORTHO05D015037 1.1e-16 90.5 79 62.0
Psat7g109680 Pisum sativum HOM05D003775 ORTHO05D004314 3.5e-15 85.5 66 65.2
unitig_736.g22485 Utricularia gibba HOM05D003112 ORTHO05D003660 6.6e-14 81.3 90 48.9
Lsat_1_v5_gn_0_1580 Lactuca sativa HOM05D003112 ORTHO05D048389 1.3e-12 77.0 40 92.5
CDE02G3734 Ceratophyllum demersum HOM05D003112 ORTHO05D003660 3.6e-12 75.5 41 85.4
MCO01G562 Micromonas commoda HOM05D003112 ORTHO05D003660 1.9e-08 63.2 83 38.6
PRCOL_00005264 Prasinoderma coloniale HOM05D003112 ORTHO05D003660 2.4e-08 62.8 83 38.6
Cfa022442 Carpinus fangiana HOM05D000228 ORTHO05D001122 1.0e-06 57.4 90 35.6
Cfa023744 Carpinus fangiana HOM05D003112 ORTHO05D003660 8.7e-06 54.3 93 32.3


User provided reference genes

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