Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G166400 Manihot esculenta HOM05D002121 ORTHO05D008891 8.3e-238 826.6 413 100.0
Gorai.009G248000 Gossypium raimondii HOM05D002121 ORTHO05D008891 2.5e-149 532.7 384 72.9
Ciclev10001657m.g Citrus clementina HOM05D002121 ORTHO05D008891 5.2e-147 525.0 323 80.2
Gohir.A05G237100 Gossypium hirsutum HOM05D002121 ORTHO05D008891 6.7e-147 524.6 382 71.7
Potri.005G180700 Populus trichocarpa HOM05D002121 ORTHO05D008891 1.5e-146 523.5 357 73.1
Duzib093G0305 Durio zibethinus HOM05D002121 ORTHO05D008891 7.5e-146 521.2 384 71.1
Gohir.D05G239200 Gossypium hirsutum HOM05D002121 ORTHO05D008891 9.7e-146 520.8 383 70.8
RcHm_v2.0_Chr6g0296321 Rosa chinensis HOM05D002121 ORTHO05D008891 4.8e-145 518.5 377 71.6
Prupe.1G492700 Prunus persica HOM05D002121 ORTHO05D008891 1.8e-144 516.5 380 71.1
TWI32G0996 Tripterygium wilfordii HOM05D002121 ORTHO05D008891 5.3e-144 515.0 385 70.1
Thecc.08G129600 Theobroma cacao HOM05D002121 ORTHO05D008891 1.6e-143 513.5 326 77.6
Atru.chr13.1527 Acer truncatum HOM05D002121 ORTHO05D008891 2.7e-143 512.7 329 76.6
TAR376G0507 Trochodendron aralioides HOM05D002121 ORTHO05D008891 6.5e-142 508.1 391 68.3
Haze_17516 Corylus avellana HOM05D002121 ORTHO05D008891 4.2e-141 505.4 376 70.7
COL.COLO4_37918 Corchorus olitorius HOM05D002121 ORTHO05D008891 9.4e-141 504.2 421 64.8
Actinidia03419 Actinidia chinensis HOM05D002121 ORTHO05D008891 2.1e-140 503.1 399 66.2
FAN27G1590 Fragaria x ananassa HOM05D002121 ORTHO05D008891 2.3e-139 499.6 312 79.2
FAN15G1848 Fragaria x ananassa HOM05D002121 ORTHO05D008891 3.0e-139 499.2 376 69.4
FAN20G0023 Fragaria x ananassa HOM05D002121 ORTHO05D008891 3.0e-139 499.2 302 81.5
FvH4_2g27490 Fragaria vesca HOM05D002121 ORTHO05D008891 6.8e-139 498.0 376 69.4
CiPaw.15G034100 Carya illinoinensis HOM05D002121 ORTHO05D008891 3.4e-138 495.7 387 69.3
Cc10_g12290 Coffea canephora HOM05D002121 ORTHO05D008891 3.4e-138 495.7 381 65.4
Cpa.g.sc64.123 Carica papaya HOM05D002121 ORTHO05D008891 1.7e-137 493.4 325 76.0
CANSAT25G1674 Cannabis sativa HOM05D002121 ORTHO05D008891 8.3e-137 491.1 337 73.9
CSS0024419 Camellia sinensis var. sinensis HOM05D002121 ORTHO05D008891 1.8e-136 490.0 387 67.2
QL09p033741 Quercus lobata HOM05D002121 ORTHO05D008891 1.8e-136 490.0 346 71.7
Phvul.009G127600 Phaseolus vulgaris HOM05D002121 ORTHO05D008891 1.0e-134 484.2 325 72.9
Dinv27282 Davidia involucrata HOM05D002121 ORTHO05D008891 1.7e-134 483.4 383 65.5
Eucgr.F03811 Eucalyptus grandis HOM05D002121 ORTHO05D008891 2.2e-134 483.0 385 66.2
THA.LOC104800213 Tarenaya hassleriana HOM05D002121 ORTHO05D008891 5.0e-134 481.9 375 66.4
Nn1g08892 Nelumbo nucifera HOM05D002121 ORTHO05D008891 6.5e-134 481.5 404 64.9
Hund17311 Selenicereus undatus HOM05D002121 ORTHO05D008891 6.5e-134 481.5 365 67.4
MSTRG.25368 Avicennia marina HOM05D002121 ORTHO05D008891 1.1e-133 480.7 377 66.8
Sp1g19270 Schrenkiella parvula HOM05D002121 ORTHO05D008891 1.1e-133 480.7 368 66.8
Thhalv10008051m.g Eutrema salsugineum HOM05D002121 ORTHO05D008891 2.5e-133 479.6 366 66.9
Rhsim11G0070100 Rhododendron simsii HOM05D002121 ORTHO05D008891 2.5e-133 479.6 388 65.2
Glyma.06G115500 Glycine max HOM05D002121 ORTHO05D008891 3.2e-133 479.2 325 71.1
Nitab4.5_0000111g0140 Nicotiana tabacum HOM05D002121 ORTHO05D008891 9.4e-133 477.6 362 68.0
VMungo1309G2347 Vigna mungo HOM05D002121 ORTHO05D008891 1.2e-132 477.2 369 66.1
BcaB03g12775 Brassica carinata HOM05D002121 ORTHO05D008891 6.1e-132 474.9 383 65.0
MELO3C010637.2 Cucumis melo HOM05D002121 ORTHO05D008891 1.0e-131 474.2 335 70.7
Aa31LG7G5680 Aethionema arabicum HOM05D002121 ORTHO05D008891 1.4e-131 473.8 367 65.9
BcaC05g26090 Brassica carinata HOM05D002121 ORTHO05D008891 1.4e-131 473.8 369 66.4
BolC5t30768H Brassica oleracea HOM05D002121 ORTHO05D004000 2.3e-131 473.0 368 66.3
AT1G21710 Arabidopsis thaliana HOM05D002121 ORTHO05D008891 3.0e-131 472.6 302 74.2
BcaB07g32168 Brassica carinata HOM05D002121 ORTHO05D008891 3.0e-131 472.6 334 70.4
Lj1g0016880 Lotus japonicus HOM05D002121 ORTHO05D008891 4.0e-131 472.2 322 72.7
BraA06t24872Z Brassica rapa HOM05D002121 ORTHO05D008891 6.8e-131 471.5 384 65.1
A06p17800 Brassica napus HOM05D002121 ORTHO05D004000 1.2e-130 470.7 370 66.8
Carub.0001s2115 Capsella rubella HOM05D002121 ORTHO05D008891 1.5e-130 470.3 379 63.6
C05p20690 Brassica napus HOM05D002121 ORTHO05D004000 2.6e-130 469.5 369 66.4
PGSC0003DMG400009246 Solanum tuberosum HOM05D002121 ORTHO05D008891 2.6e-130 469.5 352 69.3
Migut.C01114 Erythranthe guttata HOM05D002121 ORTHO05D008891 4.4e-130 468.8 401 62.3
Sopen11g009470 Solanum pennellii HOM05D002121 ORTHO05D008891 4.4e-130 468.8 357 67.5
CsaV3_6G034200 Cucumis sativus L. HOM05D002121 ORTHO05D008891 7.5e-130 468.0 333 70.3
Ah.05g171490 Amaranthus hybridus HOM05D002121 ORTHO05D008891 1.3e-129 467.2 373 64.1
MBI06_g04552_MAGBIO Magnolia biondii HOM05D002121 ORTHO05D008891 1.7e-129 466.8 326 70.6
Lsat_1_v5_gn_6_97640 Lactuca sativa HOM05D002121 ORTHO05D008891 2.8e-129 466.1 345 68.7
FAN24G0685 Fragaria x ananassa HOM05D002121 ORTHO05D008891 3.7e-129 465.7 376 66.8
Lalb_Chr23g0271121 Lupinus albus HOM05D002121 ORTHO05D008891 3.7e-129 465.7 320 70.9
arahy.Tifrunner.gnm1.ann1.VL2KU3 Arachis hypogaea HOM05D002121 ORTHO05D008891 4.9e-129 465.3 385 62.9
CARHR022070 Cardamine hirsuta HOM05D002121 ORTHO05D008891 6.3e-129 464.9 366 64.2
AL1G34880 Arabidopsis lyrata HOM05D002121 ORTHO05D008891 8.3e-129 464.5 366 64.8
AUR62002267 Chenopodium quinoa HOM05D002121 ORTHO05D008891 8.3e-129 464.5 392 61.7
EL10Ac1g00004 Beta vulgaris HOM05D002121 ORTHO05D008891 1.1e-128 464.2 377 63.1
DCAR_014379 Daucus carota HOM05D001700 ORTHO05D002131 1.1e-128 464.2 376 64.1
SGA_v2.0_scaffold52G18936 Striga asiatica HOM05D002121 ORTHO05D008891 1.1e-128 464.2 393 61.8
CAN.G1391.3 Capsicum annuum HOM05D002121 ORTHO05D008891 1.8e-128 463.4 358 66.2
Sc15g0002960 Simmondsia chinensis HOM05D002121 ORTHO05D008891 1.8e-128 463.4 308 74.7
arahy.Tifrunner.gnm1.ann1.IC0JL2 Arachis hypogaea HOM05D002121 ORTHO05D008891 3.1e-128 462.6 380 63.9
Psat5g086080 Pisum sativum HOM05D002121 ORTHO05D008891 5.4e-128 461.8 324 70.1
Aqoxy6G00263 Aquilegia oxysepala HOM05D002121 ORTHO05D008891 7.0e-128 461.5 324 70.4
vmacro00852 Vaccinium macrocarpon HOM05D002121 ORTHO05D008891 7.7e-127 458.0 434 59.0
Ca_16577_v3 Cicer arietinum L. HOM05D002121 ORTHO05D008891 1.0e-126 457.6 318 68.9
PSO170G0582 Papaver somniferum HOM05D002121 ORTHO05D008891 1.6e-124 450.3 351 65.5
HanXRQChr05g0148721 Helianthus annuus HOM05D002121 ORTHO05D008891 2.8e-124 449.5 373 63.3
Medtr3g088510 Medicago truncatula HOM05D002121 ORTHO05D008891 2.8e-124 449.5 324 67.3
CDE08G1413 Ceratophyllum demersum HOM05D002121 ORTHO05D008891 1.0e-123 447.6 333 66.7
ClCG08G005910 Citrullus lanatus HOM05D002121 ORTHO05D008891 1.8e-120 436.8 331 67.4
Peaxi162Scf00310g00513 Petunia axillaris HOM05D002121 ORTHO05D008891 2.1e-116 423.3 358 62.6
ATR0709G083 Amborella trichopoda HOM05D002121 ORTHO05D008891 2.0e-114 416.8 369 59.9
Dinv14647 Davidia involucrata HOM05D002121 ORTHO05D008891 9.8e-114 414.5 262 76.3
HPP92_011391 Vanilla planifolia HOM05D002121 ORTHO05D008891 3.2e-112 409.5 360 56.7
Zm00001eb243580 Zea mays HOM05D002121 ORTHO05D008891 1.2e-108 397.5 341 58.7
Os02g0552600 Oryza sativa ssp. japonica HOM05D002121 ORTHO05D008891 3.1e-107 392.9 329 59.3
Lj7A344T50 Lonicera japonica HOM05D002121 ORTHO05D008891 2.4e-104 383.3 314 64.6
Sabra05G0136700 Salix brachista HOM05D002121 ORTHO05D008891 9.2e-104 381.3 227 80.2
Solyc11g018510.2 Solanum lycopersicum HOM05D002121 ORTHO05D008891 1.6e-103 380.6 299 65.2
SEGI_00220 Sequoiadendron giganteum HOM05D002121 ORTHO05D008891 8.6e-102 374.8 333 58.6
SEGI_39313 Sequoiadendron giganteum HOM05D002121 ORTHO05D008891 8.6e-102 374.8 333 58.6
Sed0022381 Sechium edule HOM05D002121 ORTHO05D008891 2.1e-100 370.2 299 64.5
DCAR_002302 Daucus carota HOM05D002121 ORTHO05D008891 3.6e-100 369.4 297 64.3
Hma1.2p1_0612F.1_g188790 Hydrangea macrophylla HOM05D002121 ORTHO05D008891 3.6e-100 369.4 248 70.6
SMO367G0241 Selaginella moellendorffii HOM05D002121 ORTHO05D008891 2.3e-99 366.7 325 56.0
Mapoly0066s0098 Marchantia polymorpha HOM05D002121 ORTHO05D008891 4.0e-99 365.9 360 51.7
Pp3c15_7530 Physcomitrium patens HOM05D002121 ORTHO05D008891 5.8e-98 362.1 312 56.4
AUR62015427 Chenopodium quinoa HOM05D002121 ORTHO05D008891 2.4e-96 356.7 388 52.6
AagrBONN_evm.TU.Sc2ySwM_228.2791 Anthoceros agrestis HOM05D002121 ORTHO05D008891 1.1e-91 341.3 348 50.6
CAN.G1347.2 Capsicum annuum HOM05D002121 ORTHO05D008891 3.9e-86 322.8 389 50.6
unitig_699.g19768 Utricularia gibba HOM05D002121 ORTHO05D003088 6.4e-81 305.4 381 47.8
GSVIVG01008832001 Vitis vinifera HOM05D002121 ORTHO05D008891 3.5e-79 299.7 201 73.6
BcaB03g12777 Brassica carinata HOM05D002121 ORTHO05D008891 3.4e-74 283.1 197 73.6
SalBow7G2694 Salvia bowleyana HOM05D002121 ORTHO05D008891 4.5e-74 282.7 200 69.5
Migut.C00404 Erythranthe guttata HOM05D002121 ORTHO05D008891 2.9e-73 280.0 265 57.0
ECA246G4340 Erigeron canadensis HOM05D002121 ORTHO05D008891 7.1e-72 275.4 185 73.0
Cre01.g063632 Chlamydomonas reinhardtii HOM05D002121 ORTHO05D008891 1.8e-67 260.8 426 38.7
MCO08G296 Micromonas commoda HOM05D002121 ORTHO05D008891 1.2e-63 248.1 366 39.1
Sc15g0002990 Simmondsia chinensis HOM05D002121 ORTHO05D008891 1.3e-62 244.6 168 72.6
Oeu032210.1 Olea europaea HOM05D002121 ORTHO05D008891 3.1e-59 233.4 134 81.3
MBI06_g44498_MAGBIO Magnolia biondii HOM05D002121 ORTHO05D008891 1.0e-54 218.4 220 54.1
Sc15g0002970 Simmondsia chinensis HOM05D002121 ORTHO05D008891 5.5e-40 169.5 137 64.2
RcHm_v2.0_Chr2g0118881 Rosa chinensis HOM05D002121 ORTHO05D008891 9.4e-32 142.1 97 72.2
PRCOL_00001975 Prasinoderma coloniale HOM05D002121 ORTHO05D008891 3.6e-23 113.6 307 29.6
Hma1.2p1_0612F.1_g188810 Hydrangea macrophylla HOM05D002121 ORTHO05D008891 1.0e-17 95.5 57 78.9
HanXRQChr15g0473481 Helianthus annuus HOM05D002121 ORTHO05D008891 2.9e-17 94.0 51 82.4
Cfa022494 Carpinus fangiana HOM05D002121 ORTHO05D008891 3.8e-17 93.6 216 33.3
CBR_g3761 Chara braunii HOM05D002121 ORTHO05D008891 1.3e-12 78.6 192 29.2
PRCOL_00004066 Prasinoderma coloniale HOM05D002121 ORTHO05D008891 1.0e-09 68.9 152 30.9


User provided reference genes

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