Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G088300 Manihot esculenta HOM05D004503 ORTHO05D005460 0.0e+00 1695.2 849 100.0
Potri.005G204400 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1467.6 849 86.1
Sabra05G0155000 Salix brachista HOM05D004503 ORTHO05D005460 0.0e+00 1458.0 894 81.8
Potri.002G057800 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1434.9 849 84.2
TWI14G0297 Tripterygium wilfordii HOM05D004503 ORTHO05D005460 0.0e+00 1412.9 851 82.5
Thecc.01G170000 Theobroma cacao HOM05D004503 ORTHO05D005460 0.0e+00 1409.4 851 82.8
Gohir.A07G183000 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1400.6 851 82.3
Gorai.001G211500 Gossypium raimondii HOM05D004503 ORTHO05D005460 0.0e+00 1400.6 849 82.0
GSVIVG01020844001 Vitis vinifera HOM05D004503 ORTHO05D005460 0.0e+00 1393.3 843 82.3
COL.COLO4_08894 Corchorus olitorius HOM05D004503 ORTHO05D005460 0.0e+00 1384.4 868 80.0
Ciclev10030701m.g Citrus clementina HOM05D004503 ORTHO05D005460 0.0e+00 1382.9 850 81.9
Atru.chr6.2055 Acer truncatum HOM05D004503 ORTHO05D005460 0.0e+00 1382.5 852 81.8
Dinv07955 Davidia involucrata HOM05D004503 ORTHO05D005460 0.0e+00 1381.3 850 81.5
TAR629G1355 Trochodendron aralioides HOM05D004503 ORTHO05D005460 0.0e+00 1381.3 850 81.4
PGR042G1526 Punica granatum HOM05D004503 ORTHO05D005460 0.0e+00 1380.5 853 81.4
Duzib138G1342 Durio zibethinus HOM05D004503 ORTHO05D005460 0.0e+00 1380.2 851 81.6
CANSAT64G0633 Cannabis sativa HOM05D004503 ORTHO05D005460 0.0e+00 1372.5 851 81.4
CiPaw.13G152400 Carya illinoinensis HOM05D004503 ORTHO05D005460 0.0e+00 1370.5 853 80.5
Phvul.006G022400 Phaseolus vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1370.5 848 80.0
VMungo0647G0468 Vigna mungo HOM05D004503 ORTHO05D005460 0.0e+00 1368.2 848 80.2
Lj1C677T5 Lonicera japonica HOM05D004503 ORTHO05D005460 0.0e+00 1367.8 850 80.6
THA.LOC104826541 Tarenaya hassleriana HOM05D004503 ORTHO05D005460 0.0e+00 1365.9 868 79.4
Cpa.g.sc648.4 Carica papaya HOM05D004503 ORTHO05D005460 0.0e+00 1364.0 854 80.3
MELO3C026971.2 Cucumis melo HOM05D004503 ORTHO05D005460 0.0e+00 1363.2 851 79.4
Prupe.3G176600 Prunus persica HOM05D004503 ORTHO05D005460 0.0e+00 1363.2 851 79.9
arahy.Tifrunner.gnm1.ann1.S01VYL Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1362.8 852 79.6
QL01p017640 Quercus lobata HOM05D004503 ORTHO05D005460 0.0e+00 1362.8 908 76.1
Glyma.18G109800 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1360.9 848 79.5
arahy.Tifrunner.gnm1.ann1.96CX7H Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1360.1 852 79.3
Ca_14599_v3 Cicer arietinum L. HOM05D004503 ORTHO05D005460 0.0e+00 1359.4 857 78.9
Medtr3g046640 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1359.4 857 78.8
Lalb_Chr07g0191281 Lupinus albus HOM05D004503 ORTHO05D005460 0.0e+00 1357.4 848 79.2
CsaV3_4G031940 Cucumis sativus L. HOM05D004503 ORTHO05D005460 0.0e+00 1357.0 851 79.2
Medtr0071s0030 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1356.7 857 78.6
Actinidia12541 Actinidia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1354.0 854 80.0
Glyma.08G307900 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1353.2 848 79.2
Lj6g0014906 Lotus japonicus HOM05D004503 ORTHO05D005460 0.0e+00 1350.1 855 78.8
MD17G1136200 Malus domestica HOM05D004503 ORTHO05D005460 0.0e+00 1349.3 843 79.6
ClCG11G016490 Citrullus lanatus HOM05D004503 ORTHO05D005460 0.0e+00 1348.2 851 79.0
Psat5g185680 Pisum sativum HOM05D004503 ORTHO05D005460 0.0e+00 1346.3 857 78.3
Sed0003027 Sechium edule HOM05D004503 ORTHO05D005460 0.0e+00 1344.3 851 78.7
Nitab4.5_0002251g0070 Nicotiana tabacum HOM05D004503 ORTHO05D005460 0.0e+00 1336.6 853 79.1
SGA_v2.0_scaffold70G23615 Striga asiatica HOM05D004503 ORTHO05D005460 0.0e+00 1332.4 870 76.9
MSTRG.6739 Avicennia marina HOM05D004503 ORTHO05D005460 0.0e+00 1332.0 850 79.1
Solyc07g056220.3 Solanum lycopersicum HOM05D004503 ORTHO05D005460 0.0e+00 1332.0 852 78.4
Sopen07g029580 Solanum pennellii HOM05D004503 ORTHO05D005460 0.0e+00 1330.1 852 78.3
Migut.M00558 Erythranthe guttata HOM05D004503 ORTHO05D005460 0.0e+00 1329.7 850 78.6
vmacro08730 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 0.0e+00 1324.7 926 73.8
Peaxi162Scf00111g00222 Petunia axillaris HOM05D004503 ORTHO05D005460 0.0e+00 1323.1 916 73.6
RcHm_v2.0_Chr2g0152001 Rosa chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1320.1 867 76.2
CAN.G585.22 Capsicum annuum HOM05D004503 ORTHO05D005460 0.0e+00 1318.9 852 78.5
Sc09g0009430 Simmondsia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1316.6 854 77.0
Aa31LG5G23690 Aethionema arabicum HOM05D004503 ORTHO05D005460 0.0e+00 1315.4 867 76.0
EL10Ac1g01630 Beta vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1311.6 854 76.7
Thhalv10016232m.g Eutrema salsugineum HOM05D004503 ORTHO05D005460 0.0e+00 1310.4 869 76.4
HanXRQChr13g0387771 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1309.3 850 76.8
FAN05G2445 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1305.8 867 75.7
Sp4g20340 Schrenkiella parvula HOM05D004503 ORTHO05D005460 0.0e+00 1304.3 869 76.1
FvH4_6g38590 Fragaria vesca HOM05D004503 ORTHO05D005460 0.0e+00 1303.5 867 75.7
BcaC01g05572 Brassica carinata HOM05D004503 ORTHO05D005460 0.0e+00 1302.3 869 76.1
C03p24750 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1302.3 869 76.1
BolC3t14864H Brassica oleracea HOM05D004503 ORTHO05D005460 0.0e+00 1302.3 869 76.1
Lsat_1_v5_gn_8_31680 Lactuca sativa HOM05D004503 ORTHO05D005460 0.0e+00 1300.8 847 76.0
PSO675G5402 Papaver somniferum HOM05D004503 ORTHO05D005460 0.0e+00 1300.4 850 77.1
A03p21010 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1300.0 869 75.8
BraA03t11340Z Brassica rapa HOM05D004503 ORTHO05D005460 0.0e+00 1300.0 869 75.8
FAN14G5858 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1299.3 867 75.4
AUR62026613 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1295.8 853 76.7
Cc05_g09730 Coffea canephora HOM05D004503 ORTHO05D005460 0.0e+00 1290.8 850 75.9
FAN02G3131 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1288.9 923 71.2
CSS0024997 Camellia sinensis var. sinensis HOM05D004503 ORTHO05D005460 0.0e+00 1287.7 865 76.5
AUR62034921 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1286.2 853 75.8
Aqoxy1G01732 Aquilegia oxysepala HOM05D004503 ORTHO05D005460 0.0e+00 1284.2 850 75.3
CARHR132590 Cardamine hirsuta HOM05D004503 ORTHO05D005460 0.0e+00 1284.2 869 75.1
FAN09G1308 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1282.3 923 70.7
Nn4g24335 Nelumbo nucifera HOM05D004503 ORTHO05D005460 0.0e+00 1281.9 850 75.1
Carub.0004s1999 Capsella rubella HOM05D004503 ORTHO05D005460 0.0e+00 1281.5 869 74.7
AT2G38020 Arabidopsis thaliana HOM05D004503 ORTHO05D005460 0.0e+00 1279.6 869 74.9
AL4G35000 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 0.0e+00 1279.2 869 74.8
ECA233G4498 Erigeron canadensis HOM05D004503 ORTHO05D005460 0.0e+00 1276.9 851 75.3
Hund26670 Selenicereus undatus HOM05D004503 ORTHO05D005460 0.0e+00 1274.6 952 69.4
Rhsim12G0009900 Rhododendron simsii HOM05D004503 ORTHO05D005460 0.0e+00 1270.0 880 74.3
Gohir.D07G189800 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1254.2 768 81.6
HPP92_024264 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1249.2 848 73.0
HanXRQChr13g0403751 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1227.6 793 76.4
SEGI_01586 Sequoiadendron giganteum HOM05D004503 ORTHO05D005460 0.0e+00 1225.7 844 71.2
ATR0772G123 Amborella trichopoda HOM05D004503 ORTHO05D005460 0.0e+00 1205.3 863 70.0
HPP92_024256 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1186.8 847 70.2
Eucgr.A02017 Eucalyptus grandis HOM05D004503 ORTHO05D005460 0.0e+00 1164.4 732 79.2
Ah.05g168350 Amaranthus hybridus HOM05D004503 ORTHO05D005460 0.0e+00 1119.8 853 68.2
Cfa009838 Carpinus fangiana HOM05D004503 ORTHO05D005460 0.0e+00 1102.8 853 68.6
DCAR_013322 Daucus carota HOM05D004503 ORTHO05D005460 0.0e+00 1101.7 846 68.6
Haze_23205 Corylus avellana HOM05D004503 ORTHO05D005460 0.0e+00 1091.3 1140 54.9
Os01g0666800 Oryza sativa ssp. japonica HOM05D004503 ORTHO05D005460 2.0e-307 1058.9 886 63.0
Mapoly0052s0038 Marchantia polymorpha HOM05D004503 ORTHO05D005460 2.5e-305 1052.0 849 61.0
Pp3c13_19740 Physcomitrium patens HOM05D004503 ORTHO05D005460 6.4e-301 1037.3 841 60.3
SMO358G0621 Selaginella moellendorffii HOM05D004503 ORTHO05D005460 8.6e-282 973.8 845 56.7
MBI10_g21107_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 4.7e-280 968.0 857 64.1
BcaNung06337 Brassica carinata HOM05D004503 ORTHO05D005460 1.6e-275 953.0 809 63.5
BcaB01g03734 Brassica carinata HOM05D004503 ORTHO05D005460 3.3e-273 945.3 699 71.8
PSO063G7036 Papaver somniferum HOM05D004503 ORTHO05D005460 9.0e-263 910.6 630 72.5
SHI12362 Sapria himalayana HOM05D004503 ORTHO05D005460 1.5e-262 909.8 605 74.0
vmacro23147 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 1.9e-241 839.7 731 62.8
BcaC01g05574 Brassica carinata HOM05D004503 ORTHO05D005460 1.3e-216 757.3 687 60.7
Oeu020048.5 Olea europaea HOM05D004503 ORTHO05D005460 5.2e-210 735.3 469 81.9
CDE04G0954 Ceratophyllum demersum HOM05D004503 ORTHO05D005460 9.4e-204 714.5 433 83.1
Nitab4.5_0027860g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 3.9e-189 666.0 480 69.6
MBI10_g05864_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 8.0e-179 631.7 609 58.0
Nitab4.5_0010124g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.8e-178 630.6 369 87.3
CBR_g46726 Chara braunii HOM05D004503 ORTHO05D005460 2.5e-172 610.1 854 40.6
TPR.G25270 Trifolium pratense HOM05D004503 ORTHO05D005460 3.4e-169 599.7 341 87.4
PGSC0003DMG400017305 Solanum tuberosum HOM05D004503 ORTHO05D005460 3.2e-167 593.2 408 70.1
PRCOL_00002554 Prasinoderma coloniale HOM05D004503 ORTHO05D005460 5.6e-156 555.8 858 38.8
Oeu010987.1 Olea europaea HOM05D004503 ORTHO05D005460 4.6e-142 509.6 361 68.1
Cfa025981 Carpinus fangiana HOM05D004503 ORTHO05D005460 5.1e-133 479.6 836 34.8
BcaB02g09224 Brassica carinata HOM05D004503 ORTHO05D005460 1.8e-117 427.9 600 45.2
TPR.G16790 Trifolium pratense HOM05D004503 ORTHO05D005460 1.7e-115 421.4 438 52.3
Cre03.g199311 Chlamydomonas reinhardtii HOM05D004503 ORTHO05D005460 6.9e-114 416.0 1008 30.5
AL3G43330 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 3.8e-112 410.2 377 61.3
AagrBONN_evm.TU.Sc2ySwM_368.858 Anthoceros agrestis HOM05D004503 ORTHO05D005460 3.5e-105 387.1 333 56.2
AagrBONN_evm.TU.Sc2ySwM_368.859 Anthoceros agrestis HOM05D004503 ORTHO05D005460 4.4e-100 370.2 332 55.1
MBI10_g02225_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.2e-86 325.5 265 62.6
PGR042G2164 Punica granatum HOM05D004503 ORTHO05D005460 1.6e-81 308.5 165 91.5
BcaB01g03733 Brassica carinata HOM05D004503 ORTHO05D005460 2.5e-79 301.2 158 87.3
AagrBONN_evm.TU.Sc2ySwM_117.438 Anthoceros agrestis HOM05D004503 ORTHO05D005460 1.0e-77 295.8 320 49.1
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 2.3e-77 294.7 221 69.7
Actinidia25072 Actinidia chinensis HOM05D004503 ORTHO05D005460 7.0e-74 283.1 242 59.9
Lsat_1_v5_gn_8_146460 Lactuca sativa HOM05D004503 ORTHO05D005460 1.1e-39 169.5 101 79.2
TPR.G20801 Trifolium pratense HOM05D004503 ORTHO05D005460 1.8e-37 162.2 97 77.3
Lsat_1_v5_gn_2_4101 Lactuca sativa HOM05D004503 ORTHO05D005460 6.0e-33 147.1 116 62.1
Lsat_1_v5_gn_3_97321 Lactuca sativa HOM05D004503 ORTHO05D005460 9.6e-31 139.8 98 72.4
Lsat_1_v5_gn_9_81860 Lactuca sativa HOM05D004503 ORTHO05D005460 6.2e-30 137.1 94 72.3
Lsat_1_v5_gn_1_120320 Lactuca sativa HOM05D004503 ORTHO05D005460 3.1e-29 134.8 94 70.2
FvH4_6g38010 Fragaria vesca HOM05D004503 ORTHO05D005460 5.3e-29 134.0 168 50.6
Lsat_1_v5_gn_5_109060 Lactuca sativa HOM05D004503 ORTHO05D005460 9.0e-29 133.3 106 67.9
Lsat_1_v5_gn_9_102961 Lactuca sativa HOM05D004503 ORTHO05D005460 1.2e-28 132.9 105 64.8
TPR.G6024 Trifolium pratense HOM05D004503 ORTHO05D005460 4.5e-28 131.0 67 88.1
MBI10_g02227_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 6.4e-27 127.1 125 61.6
Lsat_1_v5_gn_6_107780 Lactuca sativa HOM05D004503 ORTHO05D003526 7.1e-26 123.6 96 67.7
Lsat_1_v5_gn_9_107141 Lactuca sativa HOM05D004503 ORTHO05D005460 7.1e-26 123.6 85 70.6
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 3.5e-25 121.3 113 57.5
Lsat_1_v5_gn_0_13460 Lactuca sativa HOM05D003536 ORTHO05D004233 3.0e-24 118.2 100 63.0
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 3.9e-24 117.9 103 63.1
Lsat_1_v5_gn_4_94880 Lactuca sativa HOM05D001336 ORTHO05D001211 4.3e-23 114.4 87 64.4
Nitab4.5_0010753g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 4.3e-23 114.4 188 42.0
Lsat_1_v5_gn_8_98160 Lactuca sativa HOM05D004503 ORTHO05D005460 7.4e-23 113.6 96 62.5
Lsat_1_v5_gn_4_100901 Lactuca sativa HOM05D004503 ORTHO05D005460 2.1e-22 112.1 68 77.9
Nitab4.5_0010753g0030 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.5e-20 105.9 121 48.8
Lsat_1_v5_gn_2_36800 Lactuca sativa HOM05D004503 ORTHO05D005460 2.6e-20 105.1 61 78.7
Lsat_1_v5_gn_8_75300 Lactuca sativa HOM05D004503 ORTHO05D005460 2.5e-18 98.6 143 43.4
Lsat_1_v5_gn_8_13240 Lactuca sativa HOM05D004503 ORTHO05D005460 3.2e-18 98.2 62 77.4
Lsat_1_v5_gn_2_105761 Lactuca sativa HOM05D001000 ORTHO05D001896 2.7e-17 95.1 83 53.0
TPR.G24652 Trifolium pratense HOM05D004503 ORTHO05D005460 8.7e-16 90.1 54 85.2
C04p09630 Brassica napus HOM05D004503 ORTHO05D005460 4.8e-14 84.3 87 56.3
BolC4t22570H Brassica oleracea HOM05D004503 ORTHO05D005460 4.8e-14 84.3 87 56.3
SalBow8G3309 Salvia bowleyana HOM05D004503 ORTHO05D005460 2.0e-12 79.0 49 81.6
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 5.5e-10 70.9 37 89.2
Lsat_1_v5_gn_2_51260 Lactuca sativa HOM05D001336 ORTHO05D001211 7.2e-10 70.5 52 63.5
Lsat_1_v5_gn_8_84700 Lactuca sativa HOM05D004503 ORTHO05D005460 7.2e-10 70.5 78 47.4
Rhsim08G0005700 Rhododendron simsii HOM05D004503 ORTHO05D037450 2.7e-09 68.6 85 51.8
Lsat_1_v5_gn_8_136521 Lactuca sativa HOM05D004503 ORTHO05D000404 4.6e-09 67.8 78 51.3
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 6.7e-08 63.9 67 47.8
Lsat_1_v5_gn_5_118461 Lactuca sativa HOM05D001336 ORTHO05D001211 1.5e-07 62.8 41 75.6


User provided reference genes

Program Settings