Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 0.0e+00 1575.5 772 100.0
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 1.9e-251 872.8 758 60.9
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 1.1e-240 837.0 750 60.1
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 2.9e-228 795.8 751 57.3
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 1.5e-227 793.5 751 57.1
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 7.5e-224 781.2 776 54.8
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 3.2e-219 765.8 876 50.9
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 8.3e-215 751.1 744 54.3
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 2.0e-213 746.5 763 53.6
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 1.3e-212 743.8 742 55.1
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 2.9e-212 742.7 744 54.7
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 1.7e-207 726.9 739 53.5
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 2.2e-207 726.5 724 53.9
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 4.9e-207 725.3 748 52.0
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 1.1e-206 724.2 739 54.4
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 7.0e-206 721.5 598 62.5
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 1.2e-205 720.7 759 52.4
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 4.6e-205 718.8 759 52.3
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 1.3e-204 717.2 752 53.3
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 3.0e-204 716.1 750 53.5
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 6.6e-204 714.9 763 52.8
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 3.3e-203 712.6 736 52.9
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 9.5e-203 711.1 778 51.8
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 1.0e-201 707.6 763 52.4
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 4.0e-201 705.7 750 51.3
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 9.8e-200 701.0 777 51.5
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 4.9e-199 698.7 725 52.7
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 3.5e-197 692.6 748 51.1
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 6.0e-197 691.8 758 51.7
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 1.7e-196 690.3 745 51.5
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 5.0e-196 688.7 740 50.5
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 6.6e-196 688.3 746 51.2
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 4.7e-194 682.2 739 52.9
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 3.4e-192 676.0 760 50.7
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 3.5e-189 666.0 752 50.7
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 4.6e-189 665.6 730 53.3
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 1.3e-188 664.1 751 49.4
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 5.1e-188 662.1 759 49.1
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 1.5e-187 660.6 715 51.6
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 3.6e-186 656.0 730 52.2
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 4.0e-185 652.5 759 48.7
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 5.2e-185 652.1 726 50.1
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 1.2e-184 651.0 742 50.1
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 3.7e-183 646.0 636 54.9
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 1.9e-182 643.7 759 47.8
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 5.4e-182 642.1 743 47.8
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 3.0e-180 636.3 749 48.6
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 1.1e-177 627.9 719 50.5
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 8.9e-177 624.8 766 47.0
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 1.9e-174 617.1 732 49.5
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 2.7e-173 613.2 718 49.6
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 1.3e-172 610.9 718 49.7
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 8.7e-172 608.2 747 46.5
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 1.1e-171 607.8 744 47.0
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 1.1e-171 607.8 749 46.1
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 9.0e-169 598.2 755 46.2
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 2.4e-166 590.1 738 45.8
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 2.4e-166 590.1 726 45.9
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 9.3e-166 588.2 736 46.1
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 1.6e-165 587.4 729 48.0
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 1.6e-165 587.4 716 48.6
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 2.7e-165 586.6 720 48.6
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 7.9e-165 585.1 727 46.5
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 3.9e-164 582.8 754 44.7
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 8.7e-164 581.6 720 47.9
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 9.6e-163 578.2 737 46.1
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 1.6e-162 577.4 723 47.0
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 2.1e-162 577.0 799 43.7
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 2.8e-162 576.6 720 47.6
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 1.1e-161 574.7 736 45.0
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 6.9e-161 572.0 763 44.7
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 2.3e-156 557.0 537 57.9
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 9.6e-155 551.6 763 43.5
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 1.1e-153 548.1 727 43.6
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 1.8e-153 547.4 720 45.7
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 2.0e-152 543.9 734 43.5
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 3.4e-152 543.1 716 45.0
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 7.6e-152 542.0 730 44.9
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 4.9e-151 539.3 738 43.6
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 6.5e-151 538.9 720 43.9
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 7.1e-150 535.4 716 44.8
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 1.6e-149 534.3 766 42.6
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 1.0e-148 531.6 707 45.8
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 3.9e-148 529.6 706 43.3
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 6.7e-148 528.9 726 45.2
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 1.3e-146 524.6 554 51.8
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 1.1e-145 521.5 722 43.6
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 1.5e-144 517.7 730 43.2
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 1.5e-144 517.7 732 44.0
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 3.4e-144 516.5 554 51.6
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.0e-143 515.0 737 41.5
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 2.2e-143 513.8 441 61.9
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 1.1e-142 511.5 726 42.4
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 8.2e-138 495.4 750 41.6
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 1.2e-136 491.5 757 41.0
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 2.2e-135 487.3 744 42.1
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 3.8e-135 486.5 747 42.2
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 6.5e-135 485.7 741 41.4
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 6.5e-135 485.7 431 58.9
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 7.2e-134 482.3 747 41.4
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 6.1e-133 479.2 516 54.8
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 2.8e-130 470.3 732 38.7
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 1.5e-128 464.5 591 44.8
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 1.9e-126 457.6 739 40.5
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 4.7e-125 453.0 478 54.8
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 5.7e-123 446.0 702 39.3
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 3.7e-122 443.4 409 56.0
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 1.1e-121 441.8 708 38.4
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 4.1e-121 439.9 700 40.7
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 1.1e-118 431.8 701 37.8
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 1.2e-112 411.8 369 59.9
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 1.7e-111 407.9 543 44.6
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 1.8e-108 397.9 598 40.6
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 2.2e-106 391.0 503 46.9
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 1.1e-102 378.6 378 52.4
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 1.5e-102 378.3 750 36.0
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 2.7e-101 374.0 735 34.3
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 8.3e-98 362.5 721 34.3
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 3.1e-97 360.5 602 37.2
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 1.7e-87 328.2 562 38.4
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 3.9e-87 327.0 309 57.0
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 6.8e-84 316.2 380 44.7
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 4.6e-72 276.9 406 40.9
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 8.4e-66 256.1 744 28.9
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 2.7e-64 251.1 814 26.9
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 6.2e-61 240.0 397 39.0
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 6.4e-58 229.9 640 28.3
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 1.4e-57 228.8 171 67.3
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 1.2e-48 199.1 123 76.4
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 1.0e-47 196.1 141 65.2
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 4.3e-46 190.7 123 74.8
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 8.1e-45 186.4 231 45.0
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 1.7e-42 178.7 275 38.5
Actinidia31897 Actinidia chinensis HOM05D001988 ORTHO05D004985 1.5e-38 165.6 247 40.5
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.5e-38 164.9 597 26.1
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 9.6e-38 162.9 516 27.1
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 2.1e-37 161.8 520 28.5
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.4e-36 159.1 262 38.2
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 3.9e-31 141.0 208 38.5
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 2.1e-29 135.2 108 60.2
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 3.4e-27 127.9 343 32.7
CARHR145380 Cardamine hirsuta HOM05D001988 ORTHO05D004985 7.9e-24 116.7 206 37.4
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 1.9e-22 112.1 148 39.2
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 9.7e-22 109.8 199 31.7
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 1.7e-18 99.0 290 26.6
Sp2g13990 Schrenkiella parvula HOM05D001988 ORTHO05D004985 1.9e-17 95.5 238 31.5
AT1G42615 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 1.2e-16 92.8 145 41.4
AagrBONN_evm.TU.Sc2ySwM_369.75 Anthoceros agrestis HOM05D001988 ORTHO05D004985 6.7e-15 87.0 200 28.0
arahy.Tifrunner.gnm1.ann1.ZE0ACQ Arachis hypogaea HOM05D000603 ORTHO05D008734 2.0e-14 85.5 73 54.8
Peaxi162Scf00342g00712 Petunia axillaris HOM05D001988 ORTHO05D004985 9.7e-14 83.2 171 37.4
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 1.1e-12 79.7 69 58.0
BcaC07g42209 Brassica carinata HOM05D001988 ORTHO05D004985 1.1e-12 79.7 147 37.4
BcaC06g34029 Brassica carinata HOM05D001988 ORTHO05D004985 2.4e-12 78.6 76 51.3
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 5.3e-12 77.4 55 69.1
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 5.3e-12 77.4 65 64.6
Atru.chr11.1787 Acer truncatum HOM05D001988 ORTHO05D004985 2.6e-11 75.1 69 55.1
Cfa008983 Carpinus fangiana HOM05D001988 ORTHO05D004985 2.6e-11 75.1 125 38.4
Os05g0352700 Oryza sativa ssp. japonica HOM05D001988 ORTHO05D004985 5.9e-11 73.9 85 45.9
MCO03G550 Micromonas commoda HOM05D001988 ORTHO05D004985 4.7e-08 64.3 113 28.3
QL03p063393 Quercus lobata HOM05D001988 ORTHO05D004985 2.3e-07 62.0 52 59.6
QL03p064050 Quercus lobata HOM05D001988 ORTHO05D004985 6.7e-07 60.5 52 61.5
CBR_g30180 Chara braunii HOM05D001988 ORTHO05D004985 7.4e-06 57.0 62 38.7


User provided reference genes

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