Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G118300 Manihot esculenta HOM05D006375 ORTHO05D008188 0.0e+00 1741.5 882 100.0
Potri.004G087400 Populus trichocarpa HOM05D006375 ORTHO05D008188 0.0e+00 1132.5 955 65.3
Sabra04G0058300 Salix brachista HOM05D006375 ORTHO05D008188 0.0e+00 1102.8 914 65.0
Thecc.04G114800 Theobroma cacao HOM05D006375 ORTHO05D008188 6.0e-302 1040.8 957 60.1
Ciclev10010990m.g Citrus clementina HOM05D006375 ORTHO05D008188 6.8e-298 1027.3 949 60.9
QL93p0100_0515 Quercus lobata HOM05D006375 ORTHO05D008188 2.4e-295 1018.8 960 59.5
QL02p058134 Quercus lobata HOM05D006375 ORTHO05D008188 3.2e-295 1018.5 960 59.4
Cfa007814 Carpinus fangiana HOM05D006375 ORTHO05D008188 7.1e-295 1017.3 963 58.8
Haze_14261 Corylus avellana HOM05D006375 ORTHO05D008188 2.0e-289 999.2 935 59.5
CSS0034734 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 1.6e-278 963.0 883 59.5
Hma1.2p1_0158F.1_g070200 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 1.1e-276 956.8 853 60.8
Gohir.A07G078100 Gossypium hirsutum HOM05D006375 ORTHO05D008188 5.3e-274 948.0 864 61.8
CANSAT64G0280 Cannabis sativa HOM05D006375 ORTHO05D008188 4.9e-272 941.4 962 55.4
Lj4C263T11 Lonicera japonica HOM05D006375 ORTHO05D008188 4.9e-272 941.4 949 56.3
RcHm_v2.0_Chr3g0493161 Rosa chinensis HOM05D006375 ORTHO05D008188 5.5e-271 937.9 882 58.4
Actinidia06495 Actinidia chinensis HOM05D006375 ORTHO05D008188 7.9e-270 934.1 961 55.5
Gohir.D07G082900 Gossypium hirsutum HOM05D006375 ORTHO05D008188 3.9e-269 931.8 862 61.1
Gorai.001G088500 Gossypium raimondii HOM05D006375 ORTHO05D008188 6.7e-269 931.0 865 61.0
Atru.chr1.1908 Acer truncatum HOM05D006375 ORTHO05D008188 3.3e-268 928.7 933 56.7
TWI53G2003 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 7.4e-268 927.5 894 58.6
LjContig00141g0022245 Lotus japonicus HOM05D006375 ORTHO05D008188 2.8e-267 925.6 914 57.2
TAR374G0480 Trochodendron aralioides HOM05D006375 ORTHO05D008188 6.9e-266 921.0 966 55.6
COL.COLO4_05994 Corchorus olitorius HOM05D006375 ORTHO05D008188 1.7e-264 916.4 951 55.2
Nitab4.5_0000201g0170 Nicotiana tabacum HOM05D006375 ORTHO05D008188 2.2e-264 916.0 928 56.4
TWI74G0084 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 2.9e-264 915.6 825 60.8
Nn3g18305 Nelumbo nucifera HOM05D006375 ORTHO05D008188 6.5e-264 914.4 858 59.0
arahy.Tifrunner.gnm1.ann1.WVM8AG Arachis hypogaea HOM05D006375 ORTHO05D008188 1.2e-262 910.2 914 56.3
Nitab4.5_0010112g0040 Nicotiana tabacum HOM05D006375 ORTHO05D008188 1.2e-262 910.2 947 54.9
Solyc11g011150.2 Solanum lycopersicum HOM05D006375 ORTHO05D008188 4.6e-262 908.3 918 55.9
VMungo0647G2002 Vigna mungo HOM05D006375 ORTHO05D008188 1.3e-261 906.7 917 57.0
Rhsim10G0177200 Rhododendron simsii HOM05D006375 ORTHO05D008188 3.0e-261 905.6 969 53.3
Sopen11g005910 Solanum pennellii HOM05D006375 ORTHO05D008188 3.0e-261 905.6 918 55.8
arahy.Tifrunner.gnm1.ann1.EH3TRU Arachis hypogaea HOM05D006375 ORTHO05D008188 8.7e-261 904.0 929 56.1
PGSC0003DMG400015671 Solanum tuberosum HOM05D006375 ORTHO05D008188 1.9e-260 902.9 918 55.8
Glyma.14G214000 Glycine max HOM05D006375 ORTHO05D008188 2.5e-260 902.5 919 55.8
Lalb_Chr04g0251361 Lupinus albus HOM05D006375 ORTHO05D008188 5.7e-260 901.4 916 56.6
GSVIVG01030782001 Vitis vinifera HOM05D006375 ORTHO05D008188 6.3e-259 897.9 929 55.2
TPR.G8261 Trifolium pratense HOM05D006375 ORTHO05D008188 1.7e-256 889.8 915 55.8
CiPaw.03G071800 Carya illinoinensis HOM05D006375 ORTHO05D008188 6.5e-256 887.9 956 54.3
HanXRQChr14g0444701 Helianthus annuus HOM05D006375 ORTHO05D008188 2.1e-254 882.9 914 55.6
MD17G1258300 Malus domestica HOM05D006375 ORTHO05D008188 2.1e-254 882.9 879 57.2
Medtr5g078360 Medicago truncatula HOM05D006375 ORTHO05D008188 2.7e-254 882.5 914 56.7
Sc14g0006560 Simmondsia chinensis HOM05D006375 ORTHO05D008188 1.1e-250 870.5 955 53.0
FvH4_1g28770 Fragaria vesca HOM05D006375 ORTHO05D008188 1.2e-249 867.1 958 52.7
Sed0006511 Sechium edule HOM05D006375 ORTHO05D008188 1.2e-249 867.1 974 51.1
Cpa.g.sc116.55 Carica papaya HOM05D006375 ORTHO05D008188 4.5e-249 865.1 932 54.5
ECA238G1164 Erigeron canadensis HOM05D006375 ORTHO05D008188 2.2e-248 862.8 919 54.4
PGR004G2253 Punica granatum HOM05D006375 ORTHO05D008188 1.4e-247 860.1 910 53.0
DCAR_003431 Daucus carota HOM05D006375 ORTHO05D008188 1.9e-247 859.8 922 52.3
Aqoxy3G00081 Aquilegia oxysepala HOM05D006375 ORTHO05D008188 5.5e-247 858.2 912 52.4
MSTRG.2615 Avicennia marina HOM05D006375 ORTHO05D008188 4.6e-246 855.1 929 54.0
CsaV3_5G024160 Cucumis sativus L. HOM05D006375 ORTHO05D008188 4.6e-246 855.1 959 51.6
SGA_v2.0_scaffold2G00936 Striga asiatica HOM05D006375 ORTHO05D008188 7.9e-246 854.4 924 53.1
FAN19G0463 Fragaria x ananassa HOM05D006375 ORTHO05D008188 1.0e-245 854.0 969 51.9
Prupe.3G161000 Prunus persica HOM05D006375 ORTHO05D008188 3.9e-245 852.0 892 54.5
THA.LOC104827188 Tarenaya hassleriana HOM05D006375 ORTHO05D008188 3.3e-244 849.0 934 53.4
FAN23G0218 Fragaria x ananassa HOM05D006375 ORTHO05D008188 3.7e-243 845.5 992 50.7
Phvul.008G233100 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 4.8e-243 845.1 911 54.0
vmacro07694 Vaccinium macrocarpon HOM05D006375 ORTHO05D008188 1.1e-242 844.0 974 51.1
Hund04476 Selenicereus undatus HOM05D006375 ORTHO05D008188 1.2e-241 840.5 882 52.9
MELO3C022863.2 Cucumis melo HOM05D006375 ORTHO05D008188 1.9e-239 833.2 906 52.9
EL10Ac6g15274 Beta vulgaris HOM05D006375 ORTHO05D008188 2.3e-237 826.2 881 53.3
AL6G27600 Arabidopsis lyrata HOM05D006375 ORTHO05D008188 4.4e-236 822.0 902 52.9
PSO478G2715 Papaver somniferum HOM05D006375 ORTHO05D008188 4.8e-235 818.5 877 52.2
Psat2g047400 Pisum sativum HOM05D006375 ORTHO05D008188 1.4e-234 817.0 828 56.2
Carub.0006s1484 Capsella rubella HOM05D006375 ORTHO05D008188 1.8e-234 816.6 888 52.0
AT5G16630 Arabidopsis thaliana HOM05D006375 ORTHO05D008188 1.2e-233 813.9 894 52.6
AUR62003604 Chenopodium quinoa HOM05D006375 ORTHO05D008188 1.2e-233 813.9 869 52.4
Cc07_g13460 Coffea canephora HOM05D006375 ORTHO05D008188 1.6e-233 813.5 909 52.1
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 3.5e-233 812.4 893 51.4
Hma1.2p1_0158F.1_g070190 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 4.5e-233 812.0 751 59.0
AUR62017915 Chenopodium quinoa HOM05D006375 ORTHO05D008188 3.8e-232 808.9 850 53.8
Thhalv10012651m.g Eutrema salsugineum HOM05D006375 ORTHO05D008188 3.8e-232 808.9 895 52.2
Migut.H02262 Erythranthe guttata HOM05D006375 ORTHO05D008188 2.1e-230 803.1 820 55.0
CARHR196570 Cardamine hirsuta HOM05D006375 ORTHO05D008188 2.7e-230 802.7 900 52.0
SalBow3G0693 Salvia bowleyana HOM05D006375 ORTHO05D008188 4.7e-230 802.0 951 50.5
Aa31LG11G13020 Aethionema arabicum HOM05D006375 ORTHO05D008188 5.2e-229 798.5 958 50.3
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 5.2e-229 798.5 916 50.0
ClCG01G008800 Citrullus lanatus HOM05D006375 ORTHO05D008188 5.7e-228 795.0 969 49.3
PSO017G5819 Papaver somniferum HOM05D006375 ORTHO05D008188 4.8e-227 792.0 885 50.8
Sp6g27540 Schrenkiella parvula HOM05D006375 ORTHO05D008188 3.5e-225 785.8 914 51.0
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 5.9e-225 785.0 897 50.2
BraA02t05338Z Brassica rapa HOM05D006375 ORTHO05D008188 7.7e-225 784.6 897 50.1
CSS0009955 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 2.3e-221 773.1 720 59.0
BolC2t06767H Brassica oleracea HOM05D006375 ORTHO05D000255 8.3e-219 764.6 936 48.0
CAN.G222.25 Capsicum annuum HOM05D006375 ORTHO05D008188 6.5e-216 755.0 788 54.2
ATR0564G422 Amborella trichopoda HOM05D006375 ORTHO05D008188 1.5e-215 753.8 935 49.0
Os08g0427500 Oryza sativa ssp. japonica HOM05D006375 ORTHO05D008188 1.6e-209 733.8 855 49.2
Ah.02g121850 Amaranthus hybridus HOM05D006375 ORTHO05D008188 3.5e-209 732.6 872 49.2
Lsat_1_v5_gn_2_69340 Lactuca sativa HOM05D006375 ORTHO05D008188 5.9e-209 731.9 903 49.5
Peaxi162Scf00305g00616 Petunia axillaris HOM05D006375 ORTHO05D008188 2.8e-206 723.0 687 58.8
CDE05G1980 Ceratophyllum demersum HOM05D006375 ORTHO05D008188 7.5e-204 714.9 881 47.4
Zm00001eb041880 Zea mays HOM05D006375 ORTHO05D008188 6.6e-200 701.8 829 48.6
Phvul.010G024866 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 3.3e-199 699.5 689 57.2
HPP92_024778 Vanilla planifolia HOM05D006375 ORTHO05D008188 8.9e-197 691.4 962 43.7
Dinv28205 Davidia involucrata HOM05D006375 ORTHO05D008188 1.1e-189 667.9 711 53.0
unitig_899.g14571 Utricularia gibba HOM05D006375 ORTHO05D008188 3.9e-184 649.4 868 47.4
MBI19_g34823_MAGBIO Magnolia biondii HOM05D006375 ORTHO05D008188 1.2e-180 637.9 626 55.8
SHI25352 Sapria himalayana HOM05D006375 ORTHO05D008188 1.2e-180 637.9 689 53.4
Eucgr.F02852 Eucalyptus grandis HOM05D006375 ORTHO05D008188 7.1e-178 628.6 604 56.6
SEGI_37856 Sequoiadendron giganteum HOM05D006375 ORTHO05D008188 2.3e-168 597.0 967 40.4
Pp3c22_7360 Physcomitrium patens HOM05D006375 ORTHO05D008188 4.9e-147 526.2 913 38.0
SMO139G0070 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 2.5e-146 523.9 911 38.7
SMO157G0011 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 3.5e-145 520.0 921 38.5
Mapoly0069s0010 Marchantia polymorpha HOM05D006375 ORTHO05D008188 4.6e-137 493.0 973 36.2
AagrBONN_evm.TU.Sc2ySwM_340.97 Anthoceros agrestis HOM05D006375 ORTHO05D008188 3.4e-132 476.9 869 36.5
FAN26G3226 Fragaria x ananassa HOM05D006375 ORTHO05D008188 5.0e-131 473.0 477 54.7
CBR_g3816 Chara braunii HOM05D006375 ORTHO05D008188 7.7e-108 396.0 1106 29.6
Ca_22495_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 3.5e-100 370.5 418 50.7
Ca_22493_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 3.5e-60 237.7 906 28.0
PRCOL_00001710 Prasinoderma coloniale HOM05D006375 ORTHO05D008188 2.1e-49 201.8 458 31.2
MCO12G035 Micromonas commoda HOM05D006375 ORTHO05D008188 2.8e-49 201.4 385 34.5
Peaxi162Scf00305g00615 Petunia axillaris HOM05D006375 ORTHO05D008188 2.3e-43 181.8 153 61.4
Haze_27154 Corylus avellana HOM05D006375 ORTHO05D008188 3.1e-40 171.4 379 31.4
Nn2g13217 Nelumbo nucifera HOM05D006375 ORTHO05D008188 1.1e-29 136.3 95 66.3
Cre12.g557400 Chlamydomonas reinhardtii HOM05D006375 ORTHO05D008188 7.4e-26 123.6 312 30.8
Cfa025272 Carpinus fangiana HOM05D006375 ORTHO05D008188 1.1e-24 119.8 373 24.9
CAN.G222.26 Capsicum annuum HOM05D006375 ORTHO05D008188 1.5e-18 99.4 97 59.8
SHI25356 Sapria himalayana HOM05D006375 ORTHO05D008188 2.2e-17 95.5 87 59.8
Cfa024716 Carpinus fangiana HOM05D006375 ORTHO05D008188 2.4e-16 92.0 486 22.8
FAN26G2035 Fragaria x ananassa HOM05D006375 ORTHO05D008188 1.0e-14 86.7 167 40.7
COL.COLO4_05996 Corchorus olitorius HOM05D006375 ORTHO05D000012 2.5e-13 82.0 108 49.1
SHI25355 Sapria himalayana HOM05D006375 ORTHO05D000014 3.3e-10 71.6 159 32.1
GSVIVG01023078001 Vitis vinifera HOM05D000241 ORTHO05D440677 1.0e-06 60.1 44 63.6


User provided reference genes

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