Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 3.1e-139 498.4 250 100.0
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 5.4e-99 364.8 247 76.9
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 5.1e-97 358.2 254 72.4
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 8.6e-97 357.5 250 72.0
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 1.1e-96 357.1 255 74.5
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 1.1e-96 357.1 259 73.7
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 1.1e-96 357.1 241 77.2
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 3.3e-96 355.5 251 71.3
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 5.6e-96 354.8 251 75.3
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.2e-95 353.6 251 75.3
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 1.8e-94 349.7 251 72.5
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 2.3e-94 349.4 255 70.6
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 2.3e-94 349.4 250 73.2
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 3.1e-94 349.0 250 72.0
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 3.1e-94 349.0 251 72.5
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 3.1e-94 349.0 251 74.1
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 3.1e-94 349.0 251 74.1
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 4.0e-94 348.6 254 72.0
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 4.0e-94 348.6 248 72.2
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 5.2e-94 348.2 254 72.0
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.5e-93 346.7 259 70.7
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 2.0e-93 346.3 249 71.5
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 2.0e-93 346.3 257 71.6
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 3.4e-93 345.5 252 72.2
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 5.8e-93 344.7 254 70.1
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 5.8e-93 344.7 256 73.0
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 1.3e-92 343.6 249 71.1
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 1.7e-92 343.2 252 71.8
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 2.2e-92 342.8 253 69.2
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 2.2e-92 342.8 185 88.6
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.9e-92 342.4 255 69.0
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 1.1e-91 340.5 193 81.9
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 3.2e-91 339.0 252 71.4
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 5.4e-91 338.2 256 68.8
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 9.2e-91 337.4 261 69.7
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 9.2e-91 337.4 199 82.4
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 1.6e-90 336.7 248 71.0
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 2.1e-90 336.3 252 71.4
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 2.7e-90 335.9 250 70.4
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 3.5e-90 335.5 255 68.6
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 6.0e-90 334.7 253 69.6
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 1.3e-89 333.6 253 68.8
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 1.3e-89 333.6 252 69.4
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 3.0e-89 332.4 209 79.4
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 3.0e-89 332.4 198 83.8
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 1.1e-88 330.5 260 68.1
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 1.1e-88 330.5 251 69.3
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 1.9e-88 329.7 249 69.5
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 2.5e-88 329.3 248 69.4
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 3.3e-88 328.9 252 70.6
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 3.3e-88 328.9 249 70.7
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 4.3e-88 328.6 195 81.0
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 4.3e-88 328.6 200 78.0
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 7.3e-88 327.8 259 68.3
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 9.6e-88 327.4 249 67.5
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 1.2e-87 327.0 194 80.9
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 1.6e-87 326.6 187 85.6
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 2.8e-87 325.9 246 72.0
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 3.6e-87 325.5 178 87.1
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 6.2e-87 324.7 251 67.7
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 8.1e-87 324.3 195 81.0
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 8.1e-87 324.3 197 78.2
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 8.1e-87 324.3 257 65.0
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 8.1e-87 324.3 240 69.2
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 2.4e-86 322.8 252 66.3
CAN.G62.23 Capsicum annuum HOM05D004152 ORTHO05D004878 5.2e-86 321.6 185 84.9
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 5.2e-86 321.6 252 66.7
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 6.9e-86 321.2 254 66.1
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 8.9e-86 320.9 210 74.8
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 2.6e-85 319.3 187 80.7
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 2.6e-85 319.3 187 81.3
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 3.4e-85 318.9 257 66.1
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 4.4e-85 318.5 256 63.7
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 4.4e-85 318.5 250 67.6
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 7.6e-85 317.8 250 66.8
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 7.6e-85 317.8 250 66.4
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 7.6e-85 317.8 209 74.6
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 1.3e-84 317.0 187 80.2
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 1.3e-84 317.0 251 66.5
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 1.7e-84 316.6 179 85.5
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 2.2e-84 316.2 209 74.2
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 2.9e-84 315.8 248 67.3
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 2.9e-84 315.8 252 67.1
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 2.9e-84 315.8 255 67.1
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 4.9e-84 315.1 249 66.3
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 4.9e-84 315.1 232 68.1
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 4.9e-84 315.1 253 67.2
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 1.2e-82 310.5 193 79.3
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 1.2e-82 310.5 252 65.9
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 1.6e-82 310.1 253 64.8
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 2.1e-82 309.7 250 63.6
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 2.7e-82 309.3 251 65.3
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 2.7e-82 309.3 253 64.8
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 2.7e-82 309.3 255 66.3
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 3.5e-82 308.9 233 73.8
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 3.0e-81 305.8 255 63.9
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 5.1e-81 305.1 178 82.0
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 8.7e-81 304.3 240 66.2
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 1.4e-78 297.0 184 77.7
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 2.4e-78 296.2 193 74.6
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 5.3e-78 295.0 184 78.3
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 4.5e-77 292.0 195 72.8
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 5.8e-77 291.6 193 73.6
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 7.6e-77 291.2 242 63.2
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 9.9e-77 290.8 242 62.4
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 9.9e-77 290.8 231 65.8
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 2.9e-76 289.3 255 60.8
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 2.9e-76 289.3 188 73.4
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 8.4e-76 287.7 192 72.4
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 1.4e-75 287.0 168 82.7
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 2.4e-75 286.2 259 59.8
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 5.4e-75 285.0 260 60.4
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 1.0e-73 280.8 258 58.9
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 3.0e-73 279.3 199 67.3
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 3.0e-73 279.3 254 59.1
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 3.9e-73 278.9 254 58.7
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 5.1e-73 278.5 258 58.1
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 5.1e-73 278.5 258 58.1
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 6.7e-73 278.1 183 73.2
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 8.7e-73 277.7 246 61.0
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 8.7e-73 277.7 254 58.3
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 1.5e-72 276.9 198 66.2
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 9.6e-72 274.2 181 72.9
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 1.3e-71 273.9 203 67.0
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 3.6e-71 272.3 197 66.5
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 2.4e-70 269.6 256 57.4
BcaC01g05264 Brassica carinata HOM05D004152 ORTHO05D004878 5.3e-70 268.5 248 60.9
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 5.3e-70 268.5 184 69.6
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 9.0e-70 267.7 193 68.4
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 1.2e-69 267.3 197 65.0
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 2.0e-69 266.5 174 71.8
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 7.6e-69 264.6 174 71.8
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 9.9e-69 264.2 148 84.5
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.9e-68 262.7 219 61.6
Gohir.A03G168700 Gossypium hirsutum HOM05D004152 ORTHO05D004878 4.9e-68 261.9 252 59.9
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 3.3e-64 249.2 150 78.7
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 5.6e-64 248.4 191 62.3
Cc08_g12220 Coffea canephora HOM05D004152 ORTHO05D004878 1.6e-58 230.3 205 62.4
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 6.0e-58 228.4 131 80.2
Dinv21650 Davidia involucrata HOM05D004152 ORTHO05D004878 2.8e-55 219.5 121 86.0
SalBow1G7183 Salvia bowleyana HOM05D004152 ORTHO05D004878 9.0e-54 214.5 201 62.7
Actinidia31515 Actinidia chinensis HOM05D004152 ORTHO05D004878 4.5e-53 212.2 190 61.6
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 1.0e-52 211.1 160 63.1
EL10Ac5g12363 Beta vulgaris HOM05D004152 ORTHO05D004878 3.8e-52 209.1 230 49.1
Nitab4.5_0002372g0010 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.9e-51 206.8 117 85.5
Lj8A267T12 Lonicera japonica HOM05D004152 ORTHO05D004878 2.7e-50 203.0 182 59.9
Carub.0005s2576 Capsella rubella HOM05D004152 ORTHO05D004878 9.7e-48 194.5 163 62.0
Lj8A266T18 Lonicera japonica HOM05D004152 ORTHO05D004878 8.2e-47 191.4 182 58.2
Oeu047732.1 Olea europaea HOM05D004152 ORTHO05D004878 1.8e-46 190.3 259 48.3
Rhsim05G0121600 Rhododendron simsii HOM05D004152 ORTHO05D004878 3.1e-46 189.5 131 72.5
Ah.12g054180 Amaranthus hybridus HOM05D004152 ORTHO05D004878 9.1e-46 188.0 209 48.8
Sed0021243 Sechium edule HOM05D004152 ORTHO05D004878 9.1e-46 188.0 163 63.8
TPR.G10893 Trifolium pratense HOM05D004152 ORTHO05D004878 5.5e-43 178.7 124 72.6
BcaB05g25308 Brassica carinata HOM05D004152 ORTHO05D004878 3.0e-33 146.4 164 51.2
Lsat_1_v5_gn_7_1160 Lactuca sativa HOM05D004152 ORTHO05D004878 1.8e-30 137.1 77 83.1
SalBow1G0783 Salvia bowleyana HOM05D001430 ORTHO05D004878 7.7e-29 131.7 103 65.0
A05p03570 Brassica napus HOM05D000373 ORTHO05D007048 1.1e-27 127.9 75 81.3
C04p04140 Brassica napus HOM05D000373 ORTHO05D007048 1.5e-27 127.5 75 80.0
AUR62007106 Chenopodium quinoa HOM05D004152 ORTHO05D004878 2.0e-24 117.1 112 55.4
Lsat_1_v5_gn_5_55401 Lactuca sativa HOM05D004152 ORTHO05D004878 2.6e-24 116.7 111 53.2
ATR0693G063 Amborella trichopoda HOM05D004152 ORTHO05D004878 1.1e-22 111.3 125 51.2
Rhsim03G0103100 Rhododendron simsii HOM05D004152 ORTHO05D004878 3.1e-22 109.8 116 54.3
GSVIVG01007403001 Vitis vinifera HOM05D004152 ORTHO05D004878 1.3e-15 87.8 163 38.0
COL.COLO4_34273 Corchorus olitorius HOM05D004152 ORTHO05D004878 1.8e-14 84.0 212 34.0
PRCOL_00005264 Prasinoderma coloniale HOM05D003112 ORTHO05D003660 1.3e-12 77.8 186 30.1
Ah.14g083550 Amaranthus hybridus HOM05D004152 ORTHO05D004878 2.3e-12 77.0 50 74.0
Cfa024802 Carpinus fangiana HOM05D003112 ORTHO05D003660 3.8e-12 76.3 128 37.5
MCO01G562 Micromonas commoda HOM05D003112 ORTHO05D003660 1.1e-11 74.7 151 33.1
CsaV3_5G004360 Cucumis sativus L. HOM05D004152 ORTHO05D004878 2.1e-10 70.5 55 61.8
C03p28580 Brassica napus HOM05D004152 ORTHO05D004878 4.7e-10 69.3 82 40.2
BcaB01g00650 Brassica carinata HOM05D004152 ORTHO05D004878 4.4e-08 62.8 54 51.9
Cfa023744 Carpinus fangiana HOM05D003112 ORTHO05D003660 2.8e-07 60.1 216 28.2
Ca_28701_v3 Cicer arietinum L. HOM05D004152 ORTHO05D003660 3.7e-07 59.7 96 40.6
A03p23960 Brassica napus HOM05D004152 ORTHO05D004878 2.4e-06 57.0 48 64.6
BcaC01g01539 Brassica carinata HOM05D004152 ORTHO05D004878 4.1e-06 56.2 60 50.0


User provided reference genes

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