Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.5116 Avicennia marina HOM05D004134 ORTHO05D005240 0.0e+00 1558.1 774 100.0
Migut.B00788 Erythranthe guttata HOM05D004134 ORTHO05D005240 0.0e+00 1204.9 771 77.4
SGA_v2.0_scaffold272G46372 Striga asiatica HOM05D004134 ORTHO05D005240 0.0e+00 1188.7 781 77.2
PGSC0003DMG400024925 Solanum tuberosum HOM05D004134 ORTHO05D005240 0.0e+00 1117.4 749 73.7
Dinv19398 Davidia involucrata HOM05D004134 ORTHO05D005240 0.0e+00 1100.1 745 72.5
SGA_v2.0_scaffold304G47905 Striga asiatica HOM05D004134 ORTHO05D005240 0.0e+00 1090.1 804 70.6
CSS0009525 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 0.0e+00 1075.8 747 71.1
CSS0031590 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 6.4e-311 1070.5 746 71.0
Thecc.01G149600 Theobroma cacao HOM05D004134 ORTHO05D005240 1.4e-307 1059.3 650 76.5
RhsimUnG0241700 Rhododendron simsii HOM05D004134 ORTHO05D005240 1.9e-307 1058.9 693 74.3
CiPaw.05G006000 Carya illinoinensis HOM05D004134 ORTHO05D005240 2.4e-307 1058.5 654 76.0
Actinidia26163 Actinidia chinensis HOM05D004134 ORTHO05D005240 9.2e-307 1056.6 721 71.4
Gohir.D12G002200 Gossypium hirsutum HOM05D004134 ORTHO05D005240 1.3e-305 1052.7 655 75.4
Rhsim10G0097200 Rhododendron simsii HOM05D004134 ORTHO05D005240 1.3e-305 1052.7 708 73.3
Gorai.008G001600 Gossypium raimondii HOM05D004134 ORTHO05D005240 3.9e-305 1051.2 655 75.3
Gohir.A12G002500 Gossypium hirsutum HOM05D004134 ORTHO05D005240 9.6e-304 1046.6 655 74.7
Lju50A15T20 Lonicera japonica HOM05D004134 ORTHO05D005240 1.2e-303 1046.2 699 73.7
Duzib147G1693 Durio zibethinus HOM05D004134 ORTHO05D005240 4.7e-303 1044.3 650 74.9
Potri.003G009600 Populus trichocarpa HOM05D004134 ORTHO05D005240 1.5e-301 1039.3 701 71.8
Duzib264G0885 Durio zibethinus HOM05D004134 ORTHO05D005240 3.4e-301 1038.1 644 74.8
Lj8C281T2 Lonicera japonica HOM05D004134 ORTHO05D005240 6.4e-300 1033.9 617 78.6
HanXRQChr07g0187421 Helianthus annuus HOM05D004134 ORTHO05D005240 9.3e-299 1030.0 693 71.6
Nn1g06242 Nelumbo nucifera HOM05D004134 ORTHO05D005240 9.3e-299 1030.0 655 74.5
Haze_10066 Corylus avellana HOM05D004134 ORTHO05D005240 7.8e-298 1026.9 702 71.1
Haze_10069 Corylus avellana HOM05D004134 ORTHO05D005240 1.0e-297 1026.5 711 70.0
TAR381G1335 Trochodendron aralioides HOM05D004134 ORTHO05D005240 2.3e-297 1025.4 624 76.8
Ciclev10000416m.g Citrus clementina HOM05D004134 ORTHO05D005240 1.5e-296 1022.7 619 76.4
CAN.G798.51 Capsicum annuum HOM05D004134 ORTHO05D005240 4.3e-296 1021.1 698 72.8
TWI23G0224 Tripterygium wilfordii HOM05D004134 ORTHO05D005240 7.3e-296 1020.4 722 69.1
CANSAT54G0881 Cannabis sativa HOM05D004134 ORTHO05D005240 8.1e-295 1016.9 741 66.7
PGR042G0619 Punica granatum HOM05D004134 ORTHO05D005240 2.4e-294 1015.4 759 67.6
COL.COLO4_33567 Corchorus olitorius HOM05D004134 ORTHO05D005240 6.9e-294 1013.8 702 69.4
THA.LOC104801417 Tarenaya hassleriana HOM05D004134 ORTHO05D005240 2.6e-293 1011.9 646 73.7
Manes.02G223500 Manihot esculenta HOM05D004134 ORTHO05D005240 2.2e-292 1008.8 618 75.6
Sed0024495 Sechium edule HOM05D004134 ORTHO05D005240 1.1e-291 1006.5 694 70.2
Atru.chr6.762 Acer truncatum HOM05D004134 ORTHO05D005240 1.9e-291 1005.7 728 68.0
Phvul.006G218200 Phaseolus vulgaris HOM05D004134 ORTHO05D005240 4.2e-291 1004.6 722 67.7
Cfa014311 Carpinus fangiana HOM05D004134 ORTHO05D001258 3.5e-290 1001.5 616 75.5
Glyma.16G003700 Glycine max HOM05D004134 ORTHO05D005240 3.9e-289 998.0 690 69.7
Glyma.12G167800 Glycine max HOM05D004134 ORTHO05D005240 1.1e-288 996.5 665 71.3
Sc12g0003380 Simmondsia chinensis HOM05D004134 ORTHO05D005240 1.9e-288 995.7 666 71.9
Lj8C283T12 Lonicera japonica HOM05D004134 ORTHO05D005240 3.6e-287 991.5 617 75.9
GSVIVG01004116001 Vitis vinifera HOM05D004134 ORTHO05D005240 8.1e-287 990.3 685 71.1
QL02p100166 Quercus lobata HOM05D004134 ORTHO05D005240 6.9e-286 987.3 739 65.9
TPR.G2118 Trifolium pratense HOM05D004134 ORTHO05D005240 1.2e-285 986.5 680 69.7
MELO3C022134.2 Cucumis melo HOM05D004134 ORTHO05D005240 7.6e-285 983.8 700 68.3
Psat0s1535g0080 Pisum sativum HOM05D004134 ORTHO05D005240 1.3e-284 983.0 642 72.3
Eucgr.G00349 Eucalyptus grandis HOM05D004134 ORTHO05D005240 4.9e-284 981.1 620 74.2
arahy.Tifrunner.gnm1.ann1.FJZE1E Arachis hypogaea HOM05D004134 ORTHO05D005240 1.4e-283 979.5 689 69.5
Ca_00047_v3 Cicer arietinum L. HOM05D004134 ORTHO05D005240 1.4e-283 979.5 620 72.6
Solyc01g103720.4 Solanum lycopersicum HOM05D004134 ORTHO05D005240 5.5e-283 977.6 563 80.3
VMungo0540G2254 Vigna mungo HOM05D004134 ORTHO05D005240 1.2e-282 976.5 723 66.5
Lsat_1_v5_gn_7_76380 Lactuca sativa HOM05D004134 ORTHO05D005240 1.6e-282 976.1 627 74.6
arahy.Tifrunner.gnm1.ann1.PV76CP Arachis hypogaea HOM05D004134 ORTHO05D005240 2.7e-282 975.3 691 69.3
CsaV3_5G039580 Cucumis sativus L. HOM05D004134 ORTHO05D005240 2.3e-281 972.2 702 67.9
Oeu034147.1 Olea europaea HOM05D004134 ORTHO05D005240 1.1e-280 969.9 721 68.1
SalBow1G3184 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.3e-279 966.5 822 63.1
Prupe.7G053600 Prunus persica HOM05D004134 ORTHO05D005240 2.1e-279 965.7 679 69.5
Lj6g0001374 Lotus japonicus HOM05D004134 ORTHO05D005240 4.8e-279 964.5 623 71.7
unitig_899.g15494 Utricularia gibba HOM05D004134 ORTHO05D005240 1.8e-278 962.6 641 73.9
Aa31LG3G10940 Aethionema arabicum HOM05D004134 ORTHO05D005240 1.5e-277 959.5 745 63.2
A05p05210 Brassica napus HOM05D004134 ORTHO05D005240 4.9e-276 954.5 620 71.6
BraA05t19492Z Brassica rapa HOM05D004134 ORTHO05D005240 1.1e-275 953.4 619 71.7
C04p06100 Brassica napus HOM05D004134 ORTHO05D005240 5.5e-275 951.0 722 65.1
vmacro19872 Vaccinium macrocarpon HOM05D004134 ORTHO05D005240 5.5e-275 951.0 702 67.2
SalBow8G0286 Salvia bowleyana HOM05D004134 ORTHO05D005240 3.0e-273 945.3 702 68.4
Medtr2g006020 Medicago truncatula HOM05D004134 ORTHO05D005240 5.1e-273 944.5 687 65.4
BcaC02g12241 Brassica carinata HOM05D004134 ORTHO05D005240 6.7e-273 944.1 775 61.7
A03p25010 Brassica napus HOM05D004134 ORTHO05D005240 6.7e-273 944.1 739 63.3
BolC4t22236H Brassica oleracea HOM05D004134 ORTHO05D005240 6.7e-273 944.1 775 61.7
BraA03t11704Z Brassica rapa HOM05D004134 ORTHO05D005240 6.7e-273 944.1 739 63.1
Sp4g27170 Schrenkiella parvula HOM05D004134 ORTHO05D005240 2.5e-272 942.2 763 62.5
CARHR135440 Cardamine hirsuta HOM05D004134 ORTHO05D005240 1.3e-271 939.9 732 64.2
BcaB02g08952 Brassica carinata HOM05D004134 ORTHO05D005240 1.8e-270 936.0 713 64.2
BcaC01g05160 Brassica carinata HOM05D004134 ORTHO05D005240 2.4e-270 935.6 739 63.1
DCAR_001836 Daucus carota HOM05D004134 ORTHO05D005240 3.1e-270 935.3 758 62.7
Carub.0004s2260 Capsella rubella HOM05D004134 ORTHO05D005240 9.0e-270 933.7 776 61.0
C03p29850 Brassica napus HOM05D004134 ORTHO05D005240 5.8e-269 931.0 744 62.4
FAN18G3216 Fragaria x ananassa HOM05D004134 ORTHO05D005240 3.8e-268 928.3 735 62.3
BolC3t15332H Brassica oleracea HOM05D004134 ORTHO05D005240 5.0e-268 927.9 744 62.2
AL4G38180 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 8.4e-268 927.2 777 61.1
FvH4_5g21650 Fragaria vesca HOM05D004134 ORTHO05D005240 1.1e-267 926.8 713 65.1
MD05G1062400 Malus domestica HOM05D004134 ORTHO05D005240 3.5e-266 921.8 624 70.4
Hund16551 Selenicereus undatus HOM05D004134 ORTHO05D005240 8.7e-265 917.1 683 65.3
BcaB01g03295 Brassica carinata HOM05D004134 ORTHO05D005240 2.5e-264 915.6 786 59.3
MD10G1070100 Malus domestica HOM05D004134 ORTHO05D005240 2.5e-264 915.6 707 65.1
Zm00001eb131370 Zea mays HOM05D004134 ORTHO05D005240 2.5e-264 915.6 688 63.1
AT2G40360 Arabidopsis thaliana HOM05D004134 ORTHO05D005240 2.4e-262 909.1 747 61.6
Hma1.2p1_0427F.1_g150710 Hydrangea macrophylla HOM05D004134 ORTHO05D005240 3.1e-262 908.7 625 69.6
PSO384G1237 Papaver somniferum HOM05D004134 ORTHO05D005240 3.4e-261 905.2 620 69.4
PSO339G3543 Papaver somniferum HOM05D004134 ORTHO05D005240 8.5e-260 900.6 620 68.9
EL10Ac6g14818 Beta vulgaris HOM05D004134 ORTHO05D005240 7.2e-259 897.5 644 65.8
MBI13_g20493_MAGBIO Magnolia biondii HOM05D004134 ORTHO05D005240 1.6e-258 896.3 672 66.7
Dinv07474 Davidia involucrata HOM05D004134 ORTHO05D005240 1.8e-257 892.9 619 72.1
Thhalv10001320m.g Eutrema salsugineum HOM05D004134 ORTHO05D005240 1.8e-257 892.9 708 63.6
Aqoxy6G03049 Aquilegia oxysepala HOM05D004134 ORTHO05D005240 5.1e-257 891.3 628 67.8
Potri.004G222500 Populus trichocarpa HOM05D004134 ORTHO05D005240 5.1e-257 891.3 540 75.9
Sabra01G0168600 Salix brachista HOM05D004134 ORTHO05D005240 8.2e-255 884.0 707 62.8
PSO063G3695 Papaver somniferum HOM05D004134 ORTHO05D005240 9.1e-254 880.6 752 59.4
Sabra03G0005000 Salix brachista HOM05D004134 ORTHO05D005240 2.6e-248 862.4 671 64.8
FAN13G2390 Fragaria x ananassa HOM05D004134 ORTHO05D005240 9.1e-246 854.0 788 56.5
FAN04G2346 Fragaria x ananassa HOM05D004134 ORTHO05D005240 1.6e-245 853.2 771 57.5
Nitab4.5_0002596g0050 Nicotiana tabacum HOM05D004134 ORTHO05D005240 3.7e-239 832.0 758 59.5
RcHm_v2.0_Chr7g0241541 Rosa chinensis HOM05D004134 ORTHO05D005240 1.6e-234 816.6 686 61.8
AL3G45050 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 3.6e-234 815.5 659 62.1
SalBow8G3818 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.3e-231 807.0 695 62.4
RcHm_v2.0_Chr7g0209131 Rosa chinensis HOM05D004134 ORTHO05D005240 3.7e-231 805.4 653 61.9
Mapoly0025s0073 Marchantia polymorpha HOM05D004134 ORTHO05D005240 1.2e-229 800.4 642 59.7
SMO361G0066 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 5.9e-229 798.1 674 58.3
CBR_g19000 Chara braunii HOM05D004134 ORTHO05D005240 3.6e-218 762.3 716 54.2
CARHR115520 Cardamine hirsuta HOM05D004134 ORTHO05D005240 6.1e-218 761.5 554 65.5
Prupe.6G114000 Prunus persica HOM05D004134 ORTHO05D005240 1.4e-217 760.4 696 57.3
Sopen01g046140 Solanum pennellii HOM05D004134 ORTHO05D005240 1.8e-217 760.0 588 67.2
Nitab4.5_0000948g0120 Nicotiana tabacum HOM05D004134 ORTHO05D005240 4.0e-217 758.8 761 55.7
SMO004G0015 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 2.0e-216 756.5 622 58.7
Pp3c18_14790 Physcomitrium patens HOM05D004134 ORTHO05D005240 2.6e-216 756.1 711 53.3
SalBow8G2435 Salvia bowleyana HOM05D004134 ORTHO05D005240 2.4e-214 749.6 848 52.2
Haze_12759 Corylus avellana HOM05D004134 ORTHO05D005240 6.6e-212 741.5 584 63.2
Peaxi162Scf00011g00938 Petunia axillaris HOM05D004134 ORTHO05D005240 9.5e-195 684.5 466 74.0
AagrBONN_evm.TU.Sc2ySwM_344.2863 Anthoceros agrestis HOM05D004134 ORTHO05D005240 1.1e-193 681.0 589 56.7
ClCG08G001520 Citrullus lanatus HOM05D004134 ORTHO05D005240 1.8e-185 653.7 485 67.8
RcHm_v2.0_Chr7g0241521 Rosa chinensis HOM05D004134 ORTHO05D005240 1.8e-185 653.7 500 67.4
Cc07_g19170 Coffea canephora HOM05D004134 ORTHO05D005240 2.4e-185 653.3 431 70.8
Cpa.g.sc612.1 Carica papaya HOM05D004134 ORTHO05D005240 3.4e-184 649.4 696 52.0
Lalb_Chr21g0308281 Lupinus albus HOM05D004134 ORTHO05D005240 3.4e-184 649.4 522 64.4
AUR62027202 Chenopodium quinoa HOM05D004134 ORTHO05D005240 1.4e-174 617.5 505 61.4
Ah.09g229700 Amaranthus hybridus HOM05D004134 ORTHO05D005240 3.2e-174 616.3 458 65.3
Cre10.g417950 Chlamydomonas reinhardtii HOM05D004134 ORTHO05D005240 3.9e-172 609.4 681 48.0
ATR0681G288 Amborella trichopoda HOM05D004134 ORTHO05D005240 5.6e-171 605.5 424 66.5
ATR0598G150 Amborella trichopoda HOM05D004134 ORTHO05D005240 5.8e-168 595.5 424 65.1
PRCOL_00006650 Prasinoderma coloniale HOM05D004134 ORTHO05D005240 9.0e-161 571.6 722 42.4
Haze_26888 Corylus avellana HOM05D004134 ORTHO05D005240 7.2e-150 535.4 635 42.7
Cfa026475 Carpinus fangiana HOM05D004134 ORTHO05D005240 1.8e-137 494.2 677 40.9
AUR62003266 Chenopodium quinoa HOM05D004134 ORTHO05D005240 1.2e-136 491.5 512 53.5
HPP92_014183 Vanilla planifolia HOM05D004134 ORTHO05D005240 1.7e-135 487.6 506 52.4
MCO01G460 Micromonas commoda HOM05D004134 ORTHO05D005240 4.5e-128 463.0 623 40.1
AL6G11500 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 1.1e-121 441.8 320 64.7
Ah.09g232800 Amaranthus hybridus HOM05D004134 ORTHO05D005240 1.8e-105 387.9 434 47.0
Cpa.g.sc5814.1 Carica papaya HOM05D004134 ORTHO05D005240 2.0e-96 357.8 226 72.6
Cc07_g19180 Coffea canephora HOM05D004134 ORTHO05D005240 2.3e-95 354.4 189 85.2
Sopen01g046130 Solanum pennellii HOM05D004134 ORTHO05D005240 1.5e-91 341.7 183 84.2
Lalb_Chr21g0308271 Lupinus albus HOM05D004134 ORTHO05D005240 2.9e-90 337.4 192 77.6
TAR376G0266 Trochodendron aralioides HOM05D004134 ORTHO05D005240 3.1e-84 317.4 169 81.7
Carub.0008s0866 Capsella rubella HOM05D004134 ORTHO05D005240 7.8e-80 302.8 197 71.6
ATR0598G203 Amborella trichopoda HOM05D004134 ORTHO05D005240 1.1e-76 292.4 185 71.4
ATR0681G369 Amborella trichopoda HOM05D004134 ORTHO05D005240 5.8e-75 286.6 185 68.6
HPP92_014184 Vanilla planifolia HOM05D004134 ORTHO05D005240 1.7e-71 275.0 156 76.9
RcHm_v2.0_Chr7g0241531 Rosa chinensis HOM05D004134 ORTHO05D005240 1.2e-69 268.9 185 64.9
Ah.09g229690 Amaranthus hybridus HOM05D004134 ORTHO05D005240 1.2e-64 252.3 166 69.9
ClCG09G010900 Citrullus lanatus HOM05D004134 ORTHO05D005240 7.8e-64 249.6 136 77.9
ECA236G2574 Erigeron canadensis HOM05D004134 ORTHO05D005240 6.6e-63 246.5 172 71.5
A05p05190 Brassica napus HOM05D004134 ORTHO05D005240 6.7e-55 219.9 151 66.9
SalBow8G0646 Salvia bowleyana HOM05D004134 ORTHO05D005240 3.1e-52 211.1 103 90.3
Lsat_1_v5_gn_5_138060 Lactuca sativa HOM05D004134 ORTHO05D005240 3.2e-41 174.5 111 73.9
BcaC02g12245 Brassica carinata HOM05D004134 ORTHO05D005240 5.5e-41 173.7 113 71.7
Peaxi162Scf00011g00939 Petunia axillaris HOM05D004134 ORTHO05D005240 5.5e-41 173.7 84 89.3
TAR087G0001 Trochodendron aralioides HOM05D004134 ORTHO05D005240 9.7e-38 162.9 105 76.2
C04p06060 Brassica napus HOM05D004134 ORTHO05D005240 1.5e-30 139.0 79 77.2
BcaC01g05161 Brassica carinata HOM05D004134 ORTHO05D005240 1.3e-29 136.0 115 52.2
Migut.I00323 Erythranthe guttata HOM05D004134 ORTHO05D005240 4.5e-27 127.5 75 77.3
SGA_v2.0_scaffold318G48508 Striga asiatica HOM05D001260 ORTHO05D002424 1.7e-26 125.6 72 79.2
Lsat_1_v5_gn_2_109841 Lactuca sativa HOM05D004134 ORTHO05D005240 2.5e-25 121.7 72 76.4
Psat2g083520 Pisum sativum HOM05D004134 ORTHO05D023219 8.8e-23 113.2 148 45.3
TPR.G18539 Trifolium pratense HOM05D001024 ORTHO05D000878 9.7e-22 109.8 85 58.8
SGA_v2.0_scaffold94G28534 Striga asiatica HOM05D004134 ORTHO05D023219 8.8e-15 86.7 53 73.6
Ah.03g141930 Amaranthus hybridus HOM05D004134 ORTHO05D005240 5.3e-12 77.4 50 64.0
SGA_v2.0_scaffold2705G54186 Striga asiatica HOM05D004134 ORTHO05D023219 9.1e-12 76.6 46 73.9
Sabra01G0062700 Salix brachista HOM05D000645 ORTHO05D000494 1.1e-09 69.7 364 23.9
Atru.chr11.847 Acer truncatum HOM05D004134 ORTHO05D023219 7.2e-09 67.0 44 65.9
C09p47280 Brassica napus HOM05D005961 ORTHO05D007391 2.3e-07 62.0 341 23.2
Eucgr.K01267 Eucalyptus grandis HOM05D002560 ORTHO05D003782 3.0e-07 61.6 220 25.0
Potri.006G106600 Populus trichocarpa HOM05D002560 ORTHO05D003782 5.2e-07 60.8 218 26.1
Os03g0115400 Oryza sativa ssp. japonica HOM05D000645 ORTHO05D000494 6.7e-07 60.5 242 23.6
Sp6g17980 Schrenkiella parvula HOM05D005961 ORTHO05D007391 2.0e-06 58.9 293 23.5
BcaC04g20139 Brassica carinata HOM05D005961 ORTHO05D007391 2.6e-06 58.5 311 23.2
Rhsim11G0125000 Rhododendron simsii HOM05D004134 ORTHO05D339485 2.6e-06 58.5 62 51.6
BcaB08g35978 Brassica carinata HOM05D005961 ORTHO05D007391 3.3e-06 58.2 311 23.2
A10p13350 Brassica napus HOM05D005961 ORTHO05D007391 3.3e-06 58.2 311 23.2
BolC9t57585H Brassica oleracea HOM05D005961 ORTHO05D007391 3.3e-06 58.2 311 23.2
BraA10t43436Z Brassica rapa HOM05D005961 ORTHO05D007391 3.3e-06 58.2 311 23.2
MCO05G033 Micromonas commoda HOM05D000645 ORTHO05D000494 7.5e-06 57.0 180 26.1
THA.LOC104811694 Tarenaya hassleriana HOM05D005961 ORTHO05D007391 7.5e-06 57.0 310 22.3
QL05p027149 Quercus lobata HOM05D003006 ORTHO05D003438 9.7e-06 56.6 258 24.0


User provided reference genes

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