Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.24765 Avicennia marina HOM05D006184 ORTHO05D007862 0.0e+00 1341.3 648 100.0
SalBow2G2183 Salvia bowleyana HOM05D006184 ORTHO05D007862 0.0e+00 1234.2 645 91.0
Oeu009379.1 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1219.1 646 90.1
Cc01_g13950 Coffea canephora HOM05D006184 ORTHO05D007862 0.0e+00 1211.1 648 89.5
Hma1.2p1_0227F.1_g096310 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 0.0e+00 1201.4 644 88.8
Nitab4.5_0000102g0140 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1199.1 646 87.5
Nitab4.5_0001970g0070 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1198.0 646 87.5
Rhsim13G0072000 Rhododendron simsii HOM05D006184 ORTHO05D007862 0.0e+00 1191.4 646 87.6
CSS0002743 Camellia sinensis var. sinensis HOM05D006184 ORTHO05D007862 0.0e+00 1190.6 646 88.2
Migut.G00281 Erythranthe guttata HOM05D006184 ORTHO05D007862 0.0e+00 1190.6 648 89.0
Peaxi162Scf00451g00511 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1185.6 647 87.2
Actinidia38827 Actinidia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1185.2 646 88.7
Peaxi162Scf00216g00033 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1184.5 647 87.2
Lj1A141T56 Lonicera japonica HOM05D006184 ORTHO05D007862 0.0e+00 1181.4 646 86.7
PGR102G1950 Punica granatum HOM05D006184 ORTHO05D007862 0.0e+00 1180.2 647 87.3
EL10Ac7g16128 Beta vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1178.7 647 86.9
Oeu049272.2 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1178.7 714 81.1
Solyc06g006080.3 Solanum lycopersicum HOM05D006184 ORTHO05D007862 0.0e+00 1178.7 647 86.4
Sopen06g002030 Solanum pennellii HOM05D006184 ORTHO05D007862 0.0e+00 1178.7 647 86.4
Nn2g13623 Nelumbo nucifera HOM05D006184 ORTHO05D007862 0.0e+00 1177.2 642 86.8
PGSC0003DMG400004151 Solanum tuberosum HOM05D006184 ORTHO05D007862 0.0e+00 1177.2 647 86.4
DCAR_007390 Daucus carota HOM05D006184 ORTHO05D007862 0.0e+00 1176.8 647 86.9
Thecc.09G305300 Theobroma cacao HOM05D006184 ORTHO05D007862 0.0e+00 1175.2 647 86.9
COL.COLO4_19110 Corchorus olitorius HOM05D006184 ORTHO05D007862 0.0e+00 1174.1 645 86.8
Duzib168G0250 Durio zibethinus HOM05D006184 ORTHO05D007862 0.0e+00 1172.5 645 87.0
Manes.01G164200 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1171.8 650 87.1
Atru.chr3.4272 Acer truncatum HOM05D006184 ORTHO05D007862 0.0e+00 1171.0 648 85.8
TAR633G0598 Trochodendron aralioides HOM05D006184 ORTHO05D007862 0.0e+00 1169.8 642 86.9
HanXRQChr13g0388411 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1168.7 646 85.8
Gohir.D03G117800 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1167.9 644 86.3
Gorai.003G124300 Gossypium raimondii HOM05D006184 ORTHO05D007862 0.0e+00 1167.9 644 86.3
Ah.15g099710 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1167.5 647 86.4
Gohir.A03G049500 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1167.5 644 86.3
Hund04886 Selenicereus undatus HOM05D006184 ORTHO05D007862 0.0e+00 1167.1 650 85.8
CiPaw.13G080700 Carya illinoinensis HOM05D006184 ORTHO05D007862 0.0e+00 1165.2 647 85.6
Ciclev10027988m.g Citrus clementina HOM05D006184 ORTHO05D007862 0.0e+00 1162.5 646 86.1
Eucgr.B02273 Eucalyptus grandis HOM05D006184 ORTHO05D007862 0.0e+00 1162.5 645 85.4
Cfa011654 Carpinus fangiana HOM05D006184 ORTHO05D007862 0.0e+00 1162.1 644 85.9
QL01p026813 Quercus lobata HOM05D006184 ORTHO05D007862 0.0e+00 1162.1 646 85.4
AUR62001683 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1161.7 647 86.1
Ah.08g220740 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1160.6 647 85.3
ECA248G3465 Erigeron canadensis HOM05D006184 ORTHO05D007862 0.0e+00 1159.8 648 84.9
Manes.02G121696 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1159.4 649 86.3
AUR62020099 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1157.9 648 85.5
Phvul.006G065300 Phaseolus vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1156.0 646 84.5
arahy.Tifrunner.gnm1.ann1.N1U5TX Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1155.6 647 85.3
VMungo0540G2418 Vigna mungo HOM05D006184 ORTHO05D007862 0.0e+00 1154.8 647 84.4
Sc12g0000880 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1153.7 647 85.2
Medtr3g462970 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1150.6 647 84.1
arahy.Tifrunner.gnm1.ann1.F7MUQP Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1150.2 647 85.0
Lalb_Chr17g0345001 Lupinus albus HOM05D006184 ORTHO05D007862 0.0e+00 1150.2 647 84.2
Aqoxy4G02661 Aquilegia oxysepala HOM05D006184 ORTHO05D007862 0.0e+00 1149.8 643 84.9
FvH4_3g38200 Fragaria vesca HOM05D006184 ORTHO05D007862 0.0e+00 1149.0 648 84.7
Ca_14911_v3 Cicer arietinum L. HOM05D006184 ORTHO05D007862 0.0e+00 1148.3 647 84.1
GSVIVG01024789001 Vitis vinifera HOM05D006184 ORTHO05D007862 0.0e+00 1147.9 639 87.0
MBI05_g03463_MAGBIO Magnolia biondii HOM05D006184 ORTHO05D007862 0.0e+00 1147.5 645 85.3
MD11G1080300 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1147.5 645 84.3
CsaV3_1G036050 Cucumis sativus L. HOM05D006184 ORTHO05D007862 0.0e+00 1147.1 649 84.3
Prupe.6G060700 Prunus persica HOM05D006184 ORTHO05D007862 0.0e+00 1146.7 645 83.9
FAN21G1896 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1146.3 648 84.6
Sc06g0008420 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1146.0 645 84.8
Glyma.18G065700 Glycine max HOM05D006184 ORTHO05D007862 0.0e+00 1145.2 647 83.6
Lj6g0009842 Lotus japonicus HOM05D006184 ORTHO05D007862 0.0e+00 1145.2 647 83.6
Aa31LG5G7380 Aethionema arabicum HOM05D006184 ORTHO05D007862 0.0e+00 1144.4 646 84.2
FAN16G1207 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1144.4 645 85.0
SGA_v2.0_scaffold142G35644 Striga asiatica HOM05D006184 ORTHO05D007862 0.0e+00 1144.4 649 84.7
Thhalv10016370m.g Eutrema salsugineum HOM05D006184 ORTHO05D007862 0.0e+00 1144.0 646 84.4
MELO3C020563.2 Cucumis melo HOM05D006184 ORTHO05D007862 0.0e+00 1143.6 647 84.2
Medtr3g462950 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1143.6 648 83.8
Psat5g162200 Pisum sativum HOM05D006184 ORTHO05D007862 0.0e+00 1143.3 647 83.8
RcHm_v2.0_Chr5g0068641 Rosa chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1143.3 650 83.8
Sp4g12340 Schrenkiella parvula HOM05D006184 ORTHO05D007862 0.0e+00 1143.3 645 84.8
MD03G1074000 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1142.9 645 83.6
FAN25G1982 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1142.5 648 84.6
HanXRQChr10g0298731 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1142.5 645 84.5
Sed0012033 Sechium edule HOM05D006184 ORTHO05D007862 0.0e+00 1142.5 647 83.9
ClCG03G000880 Citrullus lanatus HOM05D006184 ORTHO05D007862 0.0e+00 1142.1 647 83.9
FAN11G1847 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1142.1 648 84.3
Cpa.g.sc112.53 Carica papaya HOM05D006184 ORTHO05D007862 0.0e+00 1140.9 647 85.6
AT2G29630 Arabidopsis thaliana HOM05D006184 ORTHO05D007862 0.0e+00 1137.1 643 84.0
Carub.0004s1072 Capsella rubella HOM05D006184 ORTHO05D007862 0.0e+00 1135.9 646 83.9
CARHR122950 Cardamine hirsuta HOM05D006184 ORTHO05D007862 0.0e+00 1135.6 645 83.9
Potri.009G043200 Populus trichocarpa HOM05D006184 ORTHO05D007862 0.0e+00 1135.6 649 84.7
CDE03G0407 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 0.0e+00 1134.4 642 83.8
BcaC02g11044 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1132.9 650 83.5
C04p21210 Brassica napus HOM05D006184 ORTHO05D007862 0.0e+00 1132.9 650 83.5
AL4G24380 Arabidopsis lyrata HOM05D006184 ORTHO05D007862 0.0e+00 1132.1 645 83.6
BcaB02g10267 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1132.1 646 83.9
BraA05t20491Z Brassica rapa HOM05D006184 ORTHO05D007862 0.0e+00 1130.9 650 83.7
Potri.001G249200 Populus trichocarpa HOM05D006184 ORTHO05D007862 0.0e+00 1130.9 649 84.4
Lsat_1_v5_gn_5_158421 Lactuca sativa HOM05D006184 ORTHO05D007862 0.0e+00 1130.2 643 83.5
A05p15770 Brassica napus HOM05D006184 ORTHO05D007862 0.0e+00 1129.4 650 83.5
BolC4t23646H Brassica oleracea HOM05D006184 ORTHO05D007862 0.0e+00 1125.5 650 82.9
ATR0564G389 Amborella trichopoda HOM05D006184 ORTHO05D007862 0.0e+00 1125.2 644 83.7
Sabra09G0030600 Salix brachista HOM05D006184 ORTHO05D007862 0.0e+00 1125.2 594 89.1
CAN.G780.2 Capsicum annuum HOM05D006184 ORTHO05D007862 0.0e+00 1123.6 649 83.5
Glyma.11G176200 Glycine max HOM05D006184 ORTHO05D007862 0.0e+00 1122.1 647 82.2
TWI79G1750 Tripterygium wilfordii HOM05D006184 ORTHO05D007862 0.0e+00 1119.4 645 83.1
CDE04G0688 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 0.0e+00 1105.5 585 88.5
Os03g0679700 Oryza sativa ssp. japonica HOM05D006184 ORTHO05D007862 0.0e+00 1104.0 647 81.6
Dinv28618 Davidia involucrata HOM05D006184 ORTHO05D007862 0.0e+00 1101.3 593 88.9
Zm00001eb051950 Zea mays HOM05D006184 ORTHO05D007862 0.0e+00 1097.4 645 80.5
Haze_24258 Corylus avellana HOM05D006184 ORTHO05D007862 6.6e-311 1070.1 644 80.7
Pp3c16_8630 Physcomitrium patens HOM05D006184 ORTHO05D007862 1.0e-303 1046.2 584 83.9
SHI12345 Sapria himalayana HOM05D006184 ORTHO05D007862 5.7e-302 1040.4 670 76.0
Pp3c25_5720 Physcomitrium patens HOM05D006184 ORTHO05D007862 1.3e-301 1039.3 576 84.5
AagrBONN_evm.TU.Sc2ySwM_117.2039 Anthoceros agrestis HOM05D006184 ORTHO05D007862 3.1e-300 1034.6 579 83.2
TPR.G13280 Trifolium pratense HOM05D006184 ORTHO05D007862 8.6e-298 1026.5 647 77.0
HPP92_012628 Vanilla planifolia HOM05D006184 ORTHO05D007862 5.6e-297 1023.8 539 88.7
Mapoly0078s0008 Marchantia polymorpha HOM05D006184 ORTHO05D007862 6.8e-295 1016.9 600 79.3
SMO272G0033 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 5.9e-291 1003.8 564 82.4
SMO165G0141 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 2.1e-288 995.3 555 82.9
Cfa015458 Carpinus fangiana HOM05D006184 ORTHO05D007862 2.5e-281 971.8 612 77.6
CBR_g30996 Chara braunii HOM05D006184 ORTHO05D007862 1.9e-252 875.9 477 87.0
Cre05.g240850 Chlamydomonas reinhardtii HOM05D006184 ORTHO05D007862 7.6e-230 800.8 513 74.1
vmacro02987 Vaccinium macrocarpon HOM05D006184 ORTHO05D007862 2.2e-197 693.0 393 83.7
Sabra16G0151300 Salix brachista HOM05D006184 ORTHO05D007862 8.0e-195 684.5 422 79.6
Haze_26876 Corylus avellana HOM05D006184 ORTHO05D007862 2.0e-193 679.9 581 59.4
RcHm_v2.0_Chr5g0068681 Rosa chinensis HOM05D006184 ORTHO05D007862 4.0e-146 522.7 267 91.8
SMO165G0069 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 7.1e-127 458.8 576 46.9
SEGI_15306 Sequoiadendron giganteum HOM05D006184 ORTHO05D007862 7.0e-74 282.7 225 62.7
Nn2g11393 Nelumbo nucifera HOM05D006184 ORTHO05D007862 6.8e-69 266.2 125 95.2
Nn2g11394 Nelumbo nucifera HOM05D006184 ORTHO05D049308 2.3e-45 188.0 101 85.1
Nn2g11392 Nelumbo nucifera HOM05D006184 ORTHO05D007862 1.1e-42 179.1 151 59.6
RcHm_v2.0_Chr5g0068691 Rosa chinensis HOM05D006184 ORTHO05D049308 2.7e-41 174.5 95 87.4
Actinidia16074 Actinidia chinensis HOM05D006184 ORTHO05D007862 2.0e-36 158.3 150 58.7
Hma1.2p1_2020F.1_g311280 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 2.0e-20 105.1 53 92.5
Hma1.2p1_0315F.1_g122560 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 2.2e-19 101.7 53 90.6
Ah.02g117460 Amaranthus hybridus HOM05D000595 ORTHO05D004141 7.9e-09 66.6 32 93.8


User provided reference genes

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