Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.21711 Avicennia marina HOM05D004146 ORTHO05D004843 1.8e-249 865.5 450 100.0
Migut.D00054 Erythranthe guttata HOM05D004146 ORTHO05D004843 8.2e-215 750.4 451 87.4
SGA_v2.0_scaffold376G50305 Striga asiatica HOM05D004146 ORTHO05D004843 2.8e-207 725.3 451 84.3
Sopen01g030990 Solanum pennellii HOM05D004146 ORTHO05D004843 1.0e-193 680.2 451 78.7
PGSC0003DMG400009054 Solanum tuberosum HOM05D004146 ORTHO05D004843 8.9e-193 677.2 451 78.3
CAN.G293.4 Capsicum annuum HOM05D004146 ORTHO05D004843 1.6e-189 666.4 448 77.7
Cc01_g21680 Coffea canephora HOM05D004146 ORTHO05D004843 5.9e-189 664.5 462 75.8
Dinv12116 Davidia involucrata HOM05D004146 ORTHO05D004843 1.0e-188 663.7 453 76.6
Ciclev10020117m.g Citrus clementina HOM05D004146 ORTHO05D004843 2.1e-186 656.0 454 76.4
Rhsim13G0002300 Rhododendron simsii HOM05D004146 ORTHO05D004843 6.1e-186 654.4 454 75.8
CSS0038119 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 1.0e-185 653.7 454 76.0
CSS0021664 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 1.8e-185 652.9 454 75.8
Thecc.01G319000 Theobroma cacao HOM05D004146 ORTHO05D004843 6.8e-185 651.0 454 76.9
Gohir.D08G141300 Gossypium hirsutum HOM05D004146 ORTHO05D004843 9.8e-184 647.1 455 75.8
QL12p018794 Quercus lobata HOM05D004146 ORTHO05D004843 1.3e-183 646.7 453 75.5
Actinidia17925 Actinidia chinensis HOM05D004146 ORTHO05D004843 2.9e-183 645.6 454 76.4
Gorai.004G145300 Gossypium raimondii HOM05D004146 ORTHO05D004843 2.9e-183 645.6 458 75.5
Atru.chr5.940 Acer truncatum HOM05D004146 ORTHO05D004843 6.4e-183 644.4 454 75.8
Gohir.A08G120400 Gossypium hirsutum HOM05D004146 ORTHO05D004843 8.3e-183 644.0 458 75.3
COL.COLO4_23187 Corchorus olitorius HOM05D004146 ORTHO05D004843 2.4e-182 642.5 449 76.4
CSS0047407 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 3.2e-182 642.1 454 74.7
vmacro02380 Vaccinium macrocarpon HOM05D004146 ORTHO05D004843 3.2e-182 642.1 460 75.2
Potri.014G117400 Populus trichocarpa HOM05D004146 ORTHO05D004843 4.6e-181 638.3 454 74.7
Peaxi162Scf00770g00128 Petunia axillaris HOM05D004146 ORTHO05D004843 6.6e-180 634.4 443 75.2
Eucgr.K03560 Eucalyptus grandis HOM05D004146 ORTHO05D004843 1.9e-179 632.9 454 74.4
Cpa.g.sc18.100 Carica papaya HOM05D004146 ORTHO05D004843 3.3e-179 632.1 454 75.6
Solyc01g079210.3 Solanum lycopersicum HOM05D004146 ORTHO05D004843 3.3e-179 632.1 425 77.4
TWI14G0575 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 3.3e-179 632.1 454 73.6
GSVIVG01028167001 Vitis vinifera HOM05D004146 ORTHO05D004843 4.3e-179 631.7 454 74.2
Manes.05G012300 Manihot esculenta HOM05D004146 ORTHO05D004843 1.2e-178 630.2 454 74.2
Sabra14G0087100 Salix brachista HOM05D004146 ORTHO05D004843 6.2e-178 627.9 462 72.9
CiPaw.08G086700 Carya illinoinensis HOM05D004146 ORTHO05D004843 8.9e-177 624.0 452 72.8
Dinv39081 Davidia involucrata HOM05D004146 ORTHO05D004843 1.2e-176 623.6 489 69.5
Nn2g12083 Nelumbo nucifera HOM05D004146 ORTHO05D004843 5.8e-176 621.3 454 72.5
TWI23G0480 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 2.4e-174 615.9 454 71.1
Phvul.001G214900 Phaseolus vulgaris HOM05D004146 ORTHO05D004843 1.2e-173 613.6 449 72.8
arahy.Tifrunner.gnm1.ann1.E9GQEB Arachis hypogaea HOM05D004146 ORTHO05D004843 1.6e-173 613.2 451 72.3
arahy.Tifrunner.gnm1.ann1.BI9FA3 Arachis hypogaea HOM05D004146 ORTHO05D004843 2.1e-173 612.8 451 72.3
VMungo1383G2606 Vigna mungo HOM05D004146 ORTHO05D004843 6.0e-173 611.3 449 72.6
Nitab4.5_0000222g0120 Nicotiana tabacum HOM05D004146 ORTHO05D004843 3.0e-172 609.0 415 76.1
Duzib211G0108 Durio zibethinus HOM05D004146 ORTHO05D004843 1.9e-171 606.3 420 76.0
AUR62024599 Chenopodium quinoa HOM05D004146 ORTHO05D004843 1.2e-170 603.6 448 70.8
TAR633G1592 Trochodendron aralioides HOM05D004146 ORTHO05D004843 2.8e-170 602.4 453 69.1
CANSAT80G2876 Cannabis sativa HOM05D004146 ORTHO05D004843 8.1e-170 600.9 456 70.4
PGR083G0515 Punica granatum HOM05D004146 ORTHO05D004843 8.1e-170 600.9 451 70.3
unitig_736.g22928 Utricularia gibba HOM05D004146 ORTHO05D004843 1.8e-169 599.7 460 72.4
Glyma.19G218500 Glycine max HOM05D004146 ORTHO05D004843 3.1e-169 599.0 449 71.9
EL10As5g23605 Beta vulgaris HOM05D004146 ORTHO05D004843 5.2e-169 598.2 449 71.0
Duzib211G0650 Durio zibethinus HOM05D004146 ORTHO05D004843 8.9e-169 597.4 454 72.5
Sc24g0004180 Simmondsia chinensis HOM05D004146 ORTHO05D004843 1.5e-168 596.7 453 70.6
FvH4_1g26770 Fragaria vesca HOM05D004146 ORTHO05D004843 7.5e-168 594.3 452 69.7
RcHm_v2.0_Chr3g0486991 Rosa chinensis HOM05D004146 ORTHO05D004843 2.9e-167 592.4 452 69.0
FAN23G2063 Fragaria x ananassa HOM05D004146 ORTHO05D004843 3.7e-167 592.0 452 69.5
CsaV3_7G030200 Cucumis sativus L. HOM05D004146 ORTHO05D004843 1.1e-166 590.5 453 70.6
Glyma.03G221500 Glycine max HOM05D004146 ORTHO05D004843 2.4e-166 589.3 456 70.6
Lj1C336G0 Lonicera japonica HOM05D004146 ORTHO05D004843 4.1e-166 588.6 454 72.0
ECA236G0429 Erigeron canadensis HOM05D004146 ORTHO05D004843 4.6e-165 585.1 458 70.3
MELO3C015904.2 Cucumis melo HOM05D004146 ORTHO05D004843 1.7e-164 583.2 453 69.8
MD01G1004200 Malus domestica HOM05D004146 ORTHO05D004843 3.0e-164 582.4 453 68.9
FAN19G1384 Fragaria x ananassa HOM05D004146 ORTHO05D004843 1.1e-163 580.5 462 67.5
Lj5g0012537 Lotus japonicus HOM05D004146 ORTHO05D004843 1.5e-163 580.1 450 69.3
FAN28G1198 Fragaria x ananassa HOM05D004146 ORTHO05D004843 2.5e-163 579.3 465 67.3
Psat3g019080 Pisum sativum HOM05D004146 ORTHO05D004843 1.2e-162 577.0 452 69.0
Aqoxy2G00845 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 1.6e-162 576.6 457 68.5
arahy.Tifrunner.gnm1.ann1.F4ZKGQ Arachis hypogaea HOM05D004146 ORTHO05D004843 2.4e-161 572.8 449 69.9
Lalb_Chr04g0260041 Lupinus albus HOM05D004146 ORTHO05D004843 2.4e-161 572.8 449 69.5
HPP92_024389 Vanilla planifolia HOM05D004146 ORTHO05D004843 3.1e-161 572.4 450 67.3
arahy.Tifrunner.gnm1.ann1.TWIF5Z Arachis hypogaea HOM05D004146 ORTHO05D004843 4.0e-161 572.0 449 69.9
Medtr7g109870 Medicago truncatula HOM05D004146 ORTHO05D004843 4.0e-161 572.0 455 68.1
Sed0005540 Sechium edule HOM05D004146 ORTHO05D004843 8.9e-161 570.9 454 68.3
Lalb_Chr18g0046551 Lupinus albus HOM05D004146 ORTHO05D004843 9.9e-160 567.4 449 68.6
HanXRQChr06g0168071 Helianthus annuus HOM05D004146 ORTHO05D004843 3.2e-158 562.4 431 70.8
THA.LOC104802140 Tarenaya hassleriana HOM05D004146 ORTHO05D004843 5.4e-158 561.6 467 66.6
TPR.G4037 Trifolium pratense HOM05D004146 ORTHO05D004843 5.4e-158 561.6 452 66.6
Prupe.3G006800 Prunus persica HOM05D004146 ORTHO05D004843 2.1e-157 559.7 393 73.5
Lalb_Chr06g0167021 Lupinus albus HOM05D004146 ORTHO05D004843 6.0e-157 558.1 449 67.7
PSO210G5259 Papaver somniferum HOM05D004146 ORTHO05D004843 6.0e-157 558.1 455 64.2
ATR0564G334 Amborella trichopoda HOM05D004146 ORTHO05D004843 3.0e-156 555.8 450 66.7
TAR362G0580 Trochodendron aralioides HOM05D004146 ORTHO05D004843 8.7e-156 554.3 426 68.3
Actinidia21373 Actinidia chinensis HOM05D004146 ORTHO05D004843 1.5e-155 553.5 451 67.8
Ca_09227_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 1.5e-155 553.5 470 65.3
ClCG09G004890 Citrullus lanatus HOM05D004146 ORTHO05D004843 1.5e-155 553.5 505 63.0
MD15G1342700 Malus domestica HOM05D004146 ORTHO05D004843 1.9e-155 553.1 457 66.7
CARHR142600 Cardamine hirsuta HOM05D004146 ORTHO05D004843 3.3e-155 552.4 454 66.1
Lj1g0001654 Lotus japonicus HOM05D004146 ORTHO05D004843 3.3e-155 552.4 449 65.9
Aa31LG1G28520 Aethionema arabicum HOM05D004146 ORTHO05D004843 1.2e-154 550.4 452 64.8
Thhalv10001452m.g Eutrema salsugineum HOM05D004146 ORTHO05D004843 4.7e-154 548.5 452 65.7
PSO761G0652 Papaver somniferum HOM05D004146 ORTHO05D004843 4.7e-154 548.5 455 64.4
TPR.G38442 Trifolium pratense HOM05D004146 ORTHO05D004843 1.4e-153 547.0 452 66.2
Aqoxy4G02480 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 2.4e-153 546.2 459 66.0
CDE10G1142 Ceratophyllum demersum HOM05D004146 ORTHO05D004843 6.9e-153 544.7 459 63.8
Sp4g29200 Schrenkiella parvula HOM05D004146 ORTHO05D004843 1.5e-152 543.5 454 65.0
AT2G47210 Arabidopsis thaliana HOM05D004146 ORTHO05D004843 2.0e-152 543.1 452 65.0
Lsat_1_v5_gn_0_33621 Lactuca sativa HOM05D004146 ORTHO05D004843 5.8e-152 541.6 459 67.1
AL4G46770 Arabidopsis lyrata HOM05D004146 ORTHO05D004843 7.6e-152 541.2 452 64.8
Os05g0540800 Oryza sativa ssp. japonica HOM05D004146 ORTHO05D004843 7.6e-152 541.2 454 65.2
C04p00700 Brassica napus HOM05D004146 ORTHO05D004843 1.7e-151 540.0 453 64.9
BolC4t21705H Brassica oleracea HOM05D004146 ORTHO05D004843 1.4e-150 537.0 453 64.5
BcaB06g29458 Brassica carinata HOM05D004146 ORTHO05D004843 3.2e-150 535.8 456 65.1
BcaC02g12586 Brassica carinata HOM05D004146 ORTHO05D004843 3.2e-150 535.8 453 64.2
BcaB02g08794 Brassica carinata HOM05D004146 ORTHO05D004843 4.2e-150 535.4 453 64.0
BraSC79t46677Z Brassica rapa HOM05D004146 ORTHO05D004843 1.3e-148 530.4 455 64.0
Nitab4.5_0010752g0020 Nicotiana tabacum HOM05D004146 ORTHO05D004843 8.7e-148 527.7 372 74.2
Carub.0004s2995 Capsella rubella HOM05D004146 ORTHO05D004843 1.9e-147 526.6 452 63.3
C04p72630 Brassica napus HOM05D004146 ORTHO05D004843 7.3e-147 524.6 457 64.3
Zm00001eb235700 Zea mays HOM05D004146 ORTHO05D004843 1.6e-146 523.5 453 62.7
BcaC02g06965 Brassica carinata HOM05D004146 ORTHO05D004843 2.1e-146 523.1 457 64.1
BraA05t19061Z Brassica rapa HOM05D004146 ORTHO05D004843 1.4e-145 520.4 483 60.0
Hma1.2p1_0965F.1_g242130 Hydrangea macrophylla HOM05D004146 ORTHO05D004843 5.3e-145 518.5 458 64.8
Carub.0004s2994 Capsella rubella HOM05D004146 ORTHO05D004843 9.0e-145 517.7 452 61.7
A04p34860 Brassica napus HOM05D004146 ORTHO05D004843 2.6e-144 516.2 481 60.5
MBI19_g36749_MAGBIO Magnolia biondii HOM05D004146 ORTHO05D004843 3.4e-144 515.8 453 63.6
Oeu044739.1 Olea europaea HOM05D004146 ORTHO05D004843 3.5e-141 505.8 395 68.4
Medtr1g086590 Medicago truncatula HOM05D004146 ORTHO05D004843 3.9e-140 502.3 426 64.6
DCAR_018267 Daucus carota HOM05D004146 ORTHO05D004843 2.1e-138 496.5 415 66.7
Hund09662 Selenicereus undatus HOM05D004146 ORTHO05D004843 1.3e-135 487.3 415 64.3
AUR62011755 Chenopodium quinoa HOM05D004146 ORTHO05D004843 2.1e-133 479.9 428 62.4
A05p00620 Brassica napus HOM05D004146 ORTHO05D004843 4.3e-131 472.2 420 60.2
Ca_10265_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 2.6e-128 463.0 507 53.5
SEGI_29063 Sequoiadendron giganteum HOM05D004146 ORTHO05D004843 1.1e-126 457.6 466 53.9
Haze_05083 Corylus avellana HOM05D004146 ORTHO05D004843 2.2e-122 443.4 480 55.0
TPR.G31750 Trifolium pratense HOM05D004146 ORTHO05D004843 2.4e-121 439.9 425 59.1
Duzib138G1200 Durio zibethinus HOM05D004146 ORTHO05D004843 2.5e-118 429.9 454 57.0
Lj1A14G70 Lonicera japonica HOM05D004146 ORTHO05D004843 2.5e-118 429.9 341 68.6
CiPaw.07G120600 Carya illinoinensis HOM05D004146 ORTHO05D004843 4.6e-117 425.6 340 66.2
AagrBONN_evm.TU.Sc2ySwM_228.1245 Anthoceros agrestis HOM05D004146 ORTHO05D004843 8.8e-116 421.4 501 48.1
Mapoly0165s0024 Marchantia polymorpha HOM05D004146 ORTHO05D004843 1.7e-114 417.2 479 49.3
SMO244G0096 Selaginella moellendorffii HOM05D004146 ORTHO05D004843 3.6e-109 399.4 453 50.6
Pp3c1_35180 Physcomitrium patens HOM05D004146 ORTHO05D004843 5.9e-104 382.1 497 45.9
BcaC02g09008 Brassica carinata HOM05D004146 ORTHO05D004843 1.5e-94 350.9 457 49.0
Psat6g160560 Pisum sativum HOM05D004146 ORTHO05D004843 2.6e-91 340.1 370 53.5
SHI33153 Sapria himalayana HOM05D004146 ORTHO05D004843 5.7e-91 339.0 238 71.0
Dinv33143 Davidia involucrata HOM05D004146 ORTHO05D004843 6.5e-87 325.5 487 43.9
BolC4t25516H Brassica oleracea HOM05D004146 ORTHO05D004843 4.1e-81 306.2 342 51.8
Psat6g160640 Pisum sativum HOM05D004146 ORTHO05D004843 2.8e-77 293.5 375 50.1
CBR_g3593 Chara braunii HOM05D004146 ORTHO05D004843 6.1e-77 292.4 543 36.1
Mapoly0092s0082 Marchantia polymorpha HOM05D004146 ORTHO05D004843 1.0e-76 291.6 520 38.3
Pp3c2_4040 Physcomitrium patens HOM05D004146 ORTHO05D004843 1.8e-73 280.8 371 45.0
SalBow3G0988 Salvia bowleyana HOM05D004146 ORTHO05D004843 5.0e-63 246.1 127 92.1
BolC4t25515H Brassica oleracea HOM05D004146 ORTHO05D004843 3.9e-55 219.9 174 65.5
BolC4t28751H Brassica oleracea HOM05D004146 ORTHO05D004843 3.9e-55 219.9 254 56.7
PRCOL_00004506 Prasinoderma coloniale HOM05D004146 ORTHO05D004843 5.6e-54 216.1 391 37.1
C04p39500 Brassica napus HOM05D004146 ORTHO05D004843 2.3e-52 210.7 178 60.7
C04p39490 Brassica napus HOM05D004146 ORTHO05D004843 7.6e-51 205.7 179 60.3
AagrBONN_evm.TU.Sc2ySwM_228.1331 Anthoceros agrestis HOM05D004146 ORTHO05D004843 2.9e-50 203.8 387 38.0
Lj1g0004326 Lotus japonicus HOM05D004146 ORTHO05D004843 1.6e-48 198.0 258 47.3
BcaC02g09009 Brassica carinata HOM05D004146 ORTHO05D004843 2.7e-48 197.2 172 59.9
Actinidia20972 Actinidia chinensis HOM05D004146 ORTHO05D004843 7.3e-46 189.1 232 49.1
Cre03.g144907 Chlamydomonas reinhardtii HOM05D004146 ORTHO05D004843 5.8e-43 179.5 263 42.6
Oeu062253.1 Olea europaea HOM05D004146 ORTHO05D004843 4.8e-37 159.8 139 60.4
MCO05G453 Micromonas commoda HOM05D004146 ORTHO05D004843 4.9e-34 149.8 352 33.2
Lj1A14G71 Lonicera japonica HOM05D004146 ORTHO05D004843 1.2e-32 145.2 133 67.7
Psat6g160680 Pisum sativum HOM05D004146 ORTHO05D004843 1.6e-32 144.8 108 63.9
TPR.G18531 Trifolium pratense HOM05D004146 ORTHO05D004843 1.2e-27 128.6 90 64.4
Lsat_1_v5_gn_2_7680 Lactuca sativa HOM05D004146 ORTHO05D004843 3.5e-24 117.1 122 62.3
Lsat_1_v5_gn_8_147141 Lactuca sativa HOM05D004146 ORTHO05D004843 4.6e-24 116.7 140 54.3
Lsat_1_v5_gn_3_136441 Lactuca sativa HOM05D004146 ORTHO05D004843 7.9e-24 115.9 147 53.1
BcaC02g12616 Brassica carinata HOM05D004146 ORTHO05D004843 9.6e-22 109.0 63 74.6
GSVIVG01028163001 Vitis vinifera HOM05D004146 ORTHO05D004843 9.6e-22 109.0 85 71.8
Cfa022451 Carpinus fangiana HOM05D004146 ORTHO05D004843 6.9e-20 102.8 306 26.8
CAN.G111.15 Capsicum annuum HOM05D004146 ORTHO05D004843 2.2e-18 97.8 56 75.0
RcHm_v2.0_Chr2g0114941 Rosa chinensis HOM05D004146 ORTHO05D004843 8.4e-18 95.9 99 52.5
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 3.2e-17 94.0 162 42.6
BolC4t28750H Brassica oleracea HOM05D004146 ORTHO05D004843 1.6e-13 81.6 199 32.2
HPP92_024388 Vanilla planifolia HOM05D002498 ORTHO05D008129 1.6e-13 81.6 53 71.7
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 1.7e-10 71.6 109 40.4
VMungo1383G1227 Vigna mungo HOM05D004146 ORTHO05D000001 2.1e-08 64.7 43 79.1
C04p39510 Brassica napus HOM05D004146 ORTHO05D004843 1.3e-07 62.0 120 41.7
CSS0026841 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 2.3e-07 61.2 32 93.8
Oeu042819.1 Olea europaea HOM05D004146 ORTHO05D004843 2.3e-07 61.2 40 77.5
DCAR_017471 Daucus carota HOM05D004146 ORTHO05D004843 3.0e-07 60.8 42 69.0
Lsat_1_v5_gn_4_71221 Lactuca sativa HOM05D002292 ORTHO05D003256 3.0e-07 60.8 42 78.6


User provided reference genes

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