Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.20308 Avicennia marina HOM05D005536 ORTHO05D006999 0.0e+00 1114.8 567 100.0
Migut.B00813 Erythranthe guttata HOM05D005536 ORTHO05D006999 2.1e-247 859.0 547 80.8
SalBow8G1128 Salvia bowleyana HOM05D005536 ORTHO05D004100 4.2e-232 808.1 496 80.6
Oeu049828.1 Olea europaea HOM05D005536 ORTHO05D006999 6.0e-231 804.3 498 81.1
Nitab4.5_0000948g0240 Nicotiana tabacum HOM05D005536 ORTHO05D006999 6.1e-223 777.7 551 73.5
Solyc01g103950.4 Solanum lycopersicum HOM05D005536 ORTHO05D006999 2.3e-222 775.8 556 73.0
PGSC0003DMG401023772 Solanum tuberosum HOM05D005536 ORTHO05D006999 2.3e-222 775.8 555 72.8
Dinv19387 Davidia involucrata HOM05D005536 ORTHO05D006999 6.7e-222 774.2 512 76.2
Lj5A254G85 Lonicera japonica HOM05D005536 ORTHO05D006999 1.1e-221 773.5 527 75.0
GSVIVG01023338001 Vitis vinifera HOM05D005536 ORTHO05D006999 1.1e-221 773.5 498 77.1
Sopen01g046340 Solanum pennellii HOM05D005536 ORTHO05D006999 4.3e-221 771.5 555 72.1
CAN.G798.23 Capsicum annuum HOM05D005536 ORTHO05D006999 7.4e-221 770.8 539 74.2
QL02p099453 Quercus lobata HOM05D005536 ORTHO05D006999 1.7e-220 769.6 516 74.4
Hma1.2p1_1108F.1_g257740 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 8.2e-220 767.3 497 77.3
Manes.10G122900 Manihot esculenta HOM05D005536 ORTHO05D006999 8.2e-220 767.3 501 76.0
Cc02_g22780 Coffea canephora HOM05D005536 ORTHO05D006999 1.1e-219 766.9 550 71.3
Peaxi162Scf00011g00635 Petunia axillaris HOM05D005536 ORTHO05D006999 1.0e-217 760.4 518 74.7
Rhsim11G0127400 Rhododendron simsii HOM05D005536 ORTHO05D006999 3.8e-217 758.4 500 75.6
Haze_01749 Corylus avellana HOM05D005536 ORTHO05D006999 8.5e-217 757.3 508 74.8
Gohir.A13G035900 Gossypium hirsutum HOM05D005536 ORTHO05D006999 7.2e-216 754.2 495 74.9
Thecc.02G089300 Theobroma cacao HOM05D005536 ORTHO05D006999 6.1e-215 751.1 495 74.9
MBI06_g20964_MAGBIO Magnolia biondii HOM05D005536 ORTHO05D006999 7.9e-215 750.7 496 74.8
Duzib132G1177 Durio zibethinus HOM05D005536 ORTHO05D006999 3.9e-214 748.4 523 71.9
Lalb_Chr20g0123601 Lupinus albus HOM05D005536 ORTHO05D006999 6.7e-214 747.7 503 74.4
Cfa005500 Carpinus fangiana HOM05D005536 ORTHO05D006999 2.0e-213 746.1 499 75.4
Gorai.013G038700 Gossypium raimondii HOM05D005536 ORTHO05D006999 5.7e-213 744.6 495 74.5
Ca_00061_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 2.8e-212 742.3 492 73.6
TAR376G0002 Trochodendron aralioides HOM05D005536 ORTHO05D006999 4.8e-212 741.5 540 70.4
CANSAT11G0651 Cannabis sativa HOM05D005536 ORTHO05D006999 6.3e-212 741.1 505 72.1
TPR.G2082 Trifolium pratense HOM05D005536 ORTHO05D006999 8.2e-212 740.7 540 68.5
Psat1g222160 Pisum sativum HOM05D005536 ORTHO05D006999 1.1e-211 740.3 496 73.2
Prupe.1G573200 Prunus persica HOM05D005536 ORTHO05D006999 2.4e-211 739.2 502 72.9
RcHm_v2.0_Chr7g0221201 Rosa chinensis HOM05D005536 ORTHO05D006999 7.0e-211 737.6 528 70.6
DCAR_006692 Daucus carota HOM05D005536 ORTHO05D006999 9.1e-211 737.3 498 74.5
unitig_749.g13511 Utricularia gibba HOM05D005536 ORTHO05D006999 1.2e-210 736.9 497 73.6
Gohir.D13G034200 Gossypium hirsutum HOM05D005536 ORTHO05D006999 2.0e-210 736.1 495 73.9
vmacro01743 Vaccinium macrocarpon HOM05D005536 ORTHO05D006999 2.6e-210 735.7 499 75.4
CiPaw.05G049900 Carya illinoinensis HOM05D005536 ORTHO05D006999 4.5e-210 734.9 488 76.6
Lj6g0001247 Lotus japonicus HOM05D005536 ORTHO05D006999 4.5e-210 734.9 527 69.1
TWI59G0084 Tripterygium wilfordii HOM05D005536 ORTHO05D006999 1.7e-209 733.0 493 73.6
CSS0004244 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 2.2e-209 732.6 509 72.1
Eucgr.G00559 Eucalyptus grandis HOM05D005536 ORTHO05D006999 3.8e-209 731.9 497 73.2
Ciclev10000782m.g Citrus clementina HOM05D005536 ORTHO05D006999 1.4e-208 729.9 499 72.7
DCAR_025347 Daucus carota HOM05D005536 ORTHO05D006999 1.4e-208 729.9 508 73.2
Medtr2g006350 Medicago truncatula HOM05D005536 ORTHO05D006999 2.5e-208 729.2 502 71.5
VMungo0540G0609 Vigna mungo HOM05D005536 ORTHO05D006999 2.5e-208 729.2 499 72.5
SGA_v2.0_scaffold110G31339 Striga asiatica HOM05D005536 ORTHO05D006999 1.6e-207 726.5 672 59.4
FAN04G2224 Fragaria x ananassa HOM05D005536 ORTHO05D006999 2.1e-207 726.1 503 71.8
FAN08G1062 Fragaria x ananassa HOM05D005536 ORTHO05D006999 3.6e-207 725.3 503 71.8
Nn1g08381 Nelumbo nucifera HOM05D005536 ORTHO05D006999 3.6e-207 725.3 511 71.4
FvH4_5g28860 Fragaria vesca HOM05D005536 ORTHO05D006999 1.0e-206 723.8 503 71.6
Potri.003G015700 Populus trichocarpa HOM05D005536 ORTHO05D006999 1.4e-206 723.4 494 73.1
Glyma.08G188200 Glycine max HOM05D005536 ORTHO05D006999 1.8e-206 723.0 494 71.9
PSO170G4094 Papaver somniferum HOM05D005536 ORTHO05D006999 2.3e-206 722.6 502 73.5
Aqoxy5G01212 Aquilegia oxysepala HOM05D005536 ORTHO05D006999 3.0e-206 722.2 514 70.6
PSO017G0725 Papaver somniferum HOM05D005536 ORTHO05D006999 5.2e-206 721.5 502 73.3
PGR042G3208 Punica granatum HOM05D005536 ORTHO05D006999 8.8e-206 720.7 514 71.6
arahy.Tifrunner.gnm1.ann1.CHH5X5 Arachis hypogaea HOM05D005536 ORTHO05D006999 5.7e-205 718.0 503 71.2
Sabra03G0008600 Salix brachista HOM05D005536 ORTHO05D006999 9.7e-205 717.2 518 70.1
Atru.BG.35.p Acer truncatum HOM05D005536 ORTHO05D006999 3.7e-204 715.3 482 74.5
Glyma.12G169900 Glycine max HOM05D005536 ORTHO05D006999 4.8e-204 714.9 485 72.2
FAN13G0194 Fragaria x ananassa HOM05D005536 ORTHO05D006999 8.2e-204 714.1 533 68.1
Phvul.006G216300 Phaseolus vulgaris HOM05D005536 ORTHO05D006999 1.1e-203 713.8 488 71.9
Actinidia39023 Actinidia chinensis HOM05D005536 ORTHO05D006999 4.1e-203 711.8 481 75.7
Sc18g0006730 Simmondsia chinensis HOM05D005536 ORTHO05D006999 9.1e-203 710.7 488 73.2
arahy.Tifrunner.gnm1.ann1.DFQ1AC Arachis hypogaea HOM05D005536 ORTHO05D006999 1.2e-202 710.3 488 72.5
ECA236G1742 Erigeron canadensis HOM05D005536 ORTHO05D006999 5.9e-202 708.0 495 71.1
HanXRQChr16g0512011 Helianthus annuus HOM05D005536 ORTHO05D006999 2.2e-201 706.1 489 71.6
Sed0010884 Sechium edule HOM05D005536 ORTHO05D006999 2.9e-201 705.7 514 68.9
ClCG11G000890 Citrullus lanatus HOM05D005536 ORTHO05D006999 3.8e-201 705.3 510 69.2
Lsat_1_v5_gn_7_79100 Lactuca sativa HOM05D005536 ORTHO05D006999 3.6e-199 698.7 488 71.5
Ah.03g139170 Amaranthus hybridus HOM05D005536 ORTHO05D006999 1.4e-198 696.8 524 68.3
Zm00001eb138710 Zea mays HOM05D005536 ORTHO05D006999 5.2e-198 694.9 490 70.6
MELO3C022605.2 Cucumis melo HOM05D005536 ORTHO05D006999 1.2e-197 693.7 512 67.6
Carub.0001s2244 Capsella rubella HOM05D005536 ORTHO05D006999 1.1e-195 687.2 485 72.2
Thhalv10007358m.g Eutrema salsugineum HOM05D005536 ORTHO05D006999 1.4e-195 686.8 484 71.9
AT1G22940 Arabidopsis thaliana HOM05D005536 ORTHO05D006999 9.1e-195 684.1 484 71.7
A09p41800 Brassica napus HOM05D005536 ORTHO05D006999 1.6e-194 683.3 491 70.5
CsaV3_5G012850 Cucumis sativus L. HOM05D005536 ORTHO05D006999 4.5e-194 681.8 508 67.5
CARHR023320 Cardamine hirsuta HOM05D005536 ORTHO05D006999 7.7e-194 681.0 484 71.3
C05p22080 Brassica napus HOM05D005536 ORTHO05D006999 1.0e-193 680.6 491 70.3
BolC5t30904H Brassica oleracea HOM05D005536 ORTHO05D006999 2.9e-193 679.1 491 70.1
THA.LOC104806870 Tarenaya hassleriana HOM05D005536 ORTHO05D006999 3.8e-193 678.7 496 70.2
ATR1136G209 Amborella trichopoda HOM05D005536 ORTHO05D006999 5.0e-193 678.3 517 65.6
AL1G36500 Arabidopsis lyrata HOM05D005536 ORTHO05D006999 5.0e-193 678.3 484 70.9
BcaC05g26200 Brassica carinata HOM05D005536 ORTHO05D006999 6.5e-193 677.9 491 70.1
BraA09t39668Z Brassica rapa HOM05D005536 ORTHO05D006999 6.5e-193 677.9 494 70.0
Aa31LG7G6950 Aethionema arabicum HOM05D005536 ORTHO05D006999 2.5e-192 676.0 491 69.7
AUR62003134 Chenopodium quinoa HOM05D005536 ORTHO05D006999 3.2e-192 675.6 486 71.0
BcaB07g32292 Brassica carinata HOM05D005536 ORTHO05D006999 1.4e-190 670.2 484 69.8
Sp1g20400 Schrenkiella parvula HOM05D005536 ORTHO05D006999 8.8e-190 667.5 484 69.8
AUR62007953 Chenopodium quinoa HOM05D005536 ORTHO05D006999 4.1e-187 658.7 466 71.2
MD15G1428400 Malus domestica HOM05D005536 ORTHO05D006999 7.0e-187 657.9 567 63.3
SEGI_00443 Sequoiadendron giganteum HOM05D005536 ORTHO05D006999 2.7e-186 656.0 532 63.0
COL.COLO4_11769 Corchorus olitorius HOM05D005536 ORTHO05D006999 1.2e-181 640.6 487 67.4
HPP92_027057 Vanilla planifolia HOM05D005536 ORTHO05D006999 3.7e-180 635.6 519 63.2
Atru.chr6.551 Acer truncatum HOM05D005536 ORTHO05D006999 2.0e-178 629.8 438 71.2
Nitab4.5_0002698g0120 Nicotiana tabacum HOM05D005536 ORTHO05D006999 9.5e-176 620.9 467 68.7
HPP92_011418 Vanilla planifolia HOM05D005536 ORTHO05D006999 5.2e-174 615.1 483 64.4
Pp3c1_39340 Physcomitrium patens HOM05D005536 ORTHO05D006999 4.6e-170 602.1 489 62.4
SMO244G0051 Selaginella moellendorffii HOM05D005536 ORTHO05D006999 3.5e-162 575.9 502 59.8
Mapoly0071s0067 Marchantia polymorpha HOM05D005536 ORTHO05D006999 9.5e-160 567.8 497 60.2
FAN18G3948 Fragaria x ananassa HOM05D005536 ORTHO05D006999 2.3e-158 563.1 391 70.1
CDE04G3554 Ceratophyllum demersum HOM05D005536 ORTHO05D006999 2.2e-148 530.0 489 56.9
Hma1.2p1_1108F.1_g257730 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 1.2e-138 497.7 323 78.3
Hma1.2p1_3213F.1_g334040 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 1.3e-127 461.1 358 69.3
AagrBONN_evm.TU.Sc2ySwM_228.4801 Anthoceros agrestis HOM05D005536 ORTHO05D006999 6.5e-124 448.7 410 55.9
Cre08.g365600 Chlamydomonas reinhardtii HOM05D005536 ORTHO05D006999 4.8e-111 406.0 568 44.2
Hund15496 Selenicereus undatus HOM05D005536 ORTHO05D006999 5.5e-99 365.9 260 66.5
Zm00001eb264810 Zea mays HOM05D005536 ORTHO05D006999 1.3e-95 354.8 279 65.9
Actinidia00197 Actinidia chinensis HOM05D005536 ORTHO05D006999 4.7e-74 283.1 460 40.4
CsaV3_5G012700 Cucumis sativus L. HOM05D005536 ORTHO05D006999 1.2e-72 278.5 370 44.6
MD08G1236400 Malus domestica HOM05D005536 ORTHO05D006999 1.3e-71 275.0 280 54.6
Cpa.g.c34456.1 Carica papaya HOM05D005536 ORTHO05D006999 2.3e-68 264.2 177 71.2
Ca_00038_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 4.7e-66 256.5 234 55.1
Actinidia27730 Actinidia chinensis HOM05D005536 ORTHO05D006999 9.5e-59 232.3 139 74.1
PGR044G0806 Punica granatum HOM05D005536 ORTHO05D006999 1.0e-57 228.8 153 72.5
CBR_g6347 Chara braunii HOM05D000019 ORTHO05D000800 4.6e-53 213.4 243 49.0
Cpa.g.sc31.109 Carica papaya HOM05D005536 ORTHO05D006999 8.1e-50 202.6 149 68.5
MD15G1428300 Malus domestica HOM05D005536 ORTHO05D006999 7.5e-48 196.1 134 79.1
Cpa.g.sc31.106 Carica papaya HOM05D005536 ORTHO05D006999 6.0e-45 186.4 125 76.8
CBR_g6345 Chara braunii HOM05D005536 ORTHO05D006999 5.1e-44 183.3 148 63.5
EL10Ac6g14966 Beta vulgaris HOM05D005536 ORTHO05D006999 6.8e-41 172.9 114 71.1
Actinidia27729 Actinidia chinensis HOM05D005536 ORTHO05D006999 3.9e-36 157.1 156 53.8
CSS0010000 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 1.5e-35 155.2 99 79.8
CSS0024456 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 1.5e-35 155.2 99 79.8
Os12g0192500 Oryza sativa ssp. japonica HOM05D005536 ORTHO05D006999 4.3e-35 153.7 97 75.3
Actinidia02850 Actinidia chinensis HOM05D005536 ORTHO05D006999 4.7e-34 150.2 294 35.7
Cfa024720 Carpinus fangiana HOM05D005536 ORTHO05D006999 1.4e-33 148.7 195 45.6
MD08G1236300 Malus domestica HOM05D005536 ORTHO05D006999 5.8e-32 143.3 128 63.3
CsaV3_5G012690 Cucumis sativus L. HOM05D005536 ORTHO05D006999 5.4e-30 136.7 173 46.8
Actinidia02848 Actinidia chinensis HOM05D005536 ORTHO05D006999 1.2e-21 109.0 75 74.7
Cpa.g.sc31.103 Carica papaya HOM05D005536 ORTHO05D006999 5.6e-19 100.1 120 45.8
ECA236G5131 Erigeron canadensis HOM05D005536 ORTHO05D006999 1.5e-16 92.0 62 67.7
Haze_27076 Corylus avellana HOM05D005536 ORTHO05D006999 1.3e-15 89.0 138 39.9
Cpa.g.sc31.102 Carica papaya HOM05D005536 ORTHO05D006999 1.6e-13 82.0 50 76.0
Actinidia27731 Actinidia chinensis HOM05D005536 ORTHO05D006999 2.7e-13 81.3 65 69.2
COL.COLO4_00968 Corchorus olitorius HOM05D005536 ORTHO05D155286 2.5e-11 74.7 198 29.8
CARHR153920 Cardamine hirsuta HOM05D005536 ORTHO05D116486 5.3e-09 67.0 62 58.1


User provided reference genes

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