Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.13768 Avicennia marina HOM05D005140 ORTHO05D006288 3.6e-278 961.1 530 100.0
SGA_v2.0_scaffold20G09272 Striga asiatica HOM05D005140 ORTHO05D006288 9.0e-229 797.0 441 86.8
Cc08_g11170 Coffea canephora HOM05D005140 ORTHO05D006288 2.6e-228 795.4 457 83.6
Migut.F01520 Erythranthe guttata HOM05D005140 ORTHO05D006288 2.9e-227 792.0 449 83.5
Gorai.004G191200 Gossypium raimondii HOM05D005140 ORTHO05D006288 3.9e-224 781.6 447 83.2
CAN.G572.25 Capsicum annuum HOM05D005140 ORTHO05D006288 1.3e-222 776.5 417 86.3
Rhsim07G0119600 Rhododendron simsii HOM05D005140 ORTHO05D006288 1.6e-222 776.2 419 86.4
Gohir.D08G182300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 1.1e-221 773.5 447 82.6
CiPaw.12G056200 Carya illinoinensis HOM05D005140 ORTHO05D006288 1.2e-220 770.0 421 86.2
Peaxi162Scf00301g01111 Petunia axillaris HOM05D005140 ORTHO05D006288 1.2e-220 770.0 424 85.1
Thecc.03G238100 Theobroma cacao HOM05D005140 ORTHO05D006288 1.5e-220 769.6 442 83.3
Dinv25152 Davidia involucrata HOM05D005140 ORTHO05D006288 2.6e-220 768.8 452 81.4
Solyc08g077750.4 Solanum lycopersicum HOM05D005140 ORTHO05D006288 8.5e-219 763.8 451 80.5
PGR031G2829 Punica granatum HOM05D005140 ORTHO05D006288 1.1e-218 763.5 424 84.0
Sopen08g026270 Solanum pennellii HOM05D005140 ORTHO05D006288 3.2e-218 761.9 451 80.0
Lsat_1_v5_gn_6_94760 Lactuca sativa HOM05D005140 ORTHO05D006288 1.6e-217 759.6 456 81.6
QL12p008469 Quercus lobata HOM05D005140 ORTHO05D006288 2.1e-217 759.2 420 85.7
Glyma.01G204000 Glycine max HOM05D005140 ORTHO05D006288 6.1e-217 757.7 416 84.9
vmacro23518 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 7.9e-217 757.3 420 85.2
Atru.chr9.1157 Acer truncatum HOM05D005140 ORTHO05D006288 1.0e-216 756.9 421 82.9
Lalb_Chr09g0324091 Lupinus albus HOM05D005140 ORTHO05D006288 1.4e-216 756.5 426 81.9
TAR636G3078 Trochodendron aralioides HOM05D005140 ORTHO05D006288 1.4e-216 756.5 427 84.1
unitig_699.g19774 Utricularia gibba HOM05D005140 ORTHO05D006288 1.8e-216 756.1 449 79.7
Manes.01G182900 Manihot esculenta HOM05D005140 ORTHO05D006288 2.3e-216 755.7 418 84.7
Haze_08349 Corylus avellana HOM05D005140 ORTHO05D006288 3.9e-216 755.0 429 84.1
Prupe.5G053400 Prunus persica HOM05D005140 ORTHO05D006288 8.8e-216 753.8 446 81.4
Sed0020438 Sechium edule HOM05D005140 ORTHO05D006288 8.8e-216 753.8 422 84.8
ClCG09G012630 Citrullus lanatus HOM05D005140 ORTHO05D006288 1.1e-215 753.4 422 84.4
Nn6g33739 Nelumbo nucifera HOM05D005140 ORTHO05D006288 1.1e-215 753.4 421 83.8
Glyma.11G039000 Glycine max HOM05D005140 ORTHO05D006288 3.3e-215 751.9 419 83.8
COL.COLO4_06693 Corchorus olitorius HOM05D005140 ORTHO05D006288 4.3e-215 751.5 442 82.6
Actinidia31490 Actinidia chinensis HOM05D005140 ORTHO05D006288 9.7e-215 750.4 490 75.1
MELO3C003340.2 Cucumis melo HOM05D005140 ORTHO05D006288 1.3e-214 750.0 423 84.2
Phvul.002G002400 Phaseolus vulgaris HOM05D005140 ORTHO05D006288 1.3e-214 750.0 423 83.2
RcHm_v2.0_Chr7g0206411 Rosa chinensis HOM05D005140 ORTHO05D006288 1.3e-214 750.0 436 82.3
CsaV3_3G049760 Cucumis sativus L. HOM05D005140 ORTHO05D006288 3.7e-214 748.4 423 83.9
Sed0013740 Sechium edule HOM05D005140 ORTHO05D006288 5.3e-213 744.6 420 83.3
Gohir.A08G162300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 6.9e-213 744.2 447 81.2
Hund14471 Selenicereus undatus HOM05D005140 ORTHO05D006288 9.1e-213 743.8 445 81.6
DCAR_008319 Daucus carota HOM05D005140 ORTHO05D006288 1.5e-212 743.0 454 79.7
FvH4_5g20680 Fragaria vesca HOM05D005140 ORTHO05D006288 2.6e-212 742.3 436 81.7
Potri.001G149900 Populus trichocarpa HOM05D005140 ORTHO05D006288 3.4e-212 741.9 418 82.5
Eucgr.D02138 Eucalyptus grandis HOM05D005140 ORTHO05D006288 4.5e-212 741.5 438 79.9
FAN13G1317 Fragaria x ananassa HOM05D005140 ORTHO05D006288 4.5e-212 741.5 438 82.0
FAN04G2093 Fragaria x ananassa HOM05D005140 ORTHO05D006288 1.0e-211 740.3 436 81.7
CANSAT21G2106 Cannabis sativa HOM05D005140 ORTHO05D006288 1.7e-211 739.6 439 80.4
FAN08G1378 Fragaria x ananassa HOM05D005140 ORTHO05D006288 3.8e-211 738.4 426 83.6
TWI60G0080 Tripterygium wilfordii HOM05D005140 ORTHO05D006288 8.5e-211 737.3 420 81.7
Psat2g175480 Pisum sativum HOM05D005140 ORTHO05D006288 1.6e-209 733.0 454 77.8
Ca_24617_v3 Cicer arietinum L. HOM05D005140 ORTHO05D006288 3.6e-209 731.9 455 77.1
arahy.Tifrunner.gnm1.ann1.FH98R9 Arachis hypogaea HOM05D005140 ORTHO05D006288 1.5e-207 726.5 459 76.7
arahy.Tifrunner.gnm1.ann1.W7TPG2 Arachis hypogaea HOM05D005140 ORTHO05D006288 1.5e-207 726.5 459 76.7
Dinv28888 Davidia involucrata HOM05D005140 ORTHO05D006288 1.7e-206 723.0 407 83.5
Duzib068G0986 Durio zibethinus HOM05D005140 ORTHO05D006288 6.3e-206 721.1 439 79.7
Nitab4.5_0012059g0010 Nicotiana tabacum HOM05D005140 ORTHO05D006288 1.1e-205 720.3 448 77.2
Lj2g0026795 Lotus japonicus HOM05D005140 ORTHO05D006288 5.3e-205 718.0 423 80.4
Ah.12g053860 Amaranthus hybridus HOM05D005140 ORTHO05D006288 2.6e-204 715.7 416 82.2
Sabra01G0119900 Salix brachista HOM05D005140 ORTHO05D006288 2.6e-204 715.7 494 71.3
Nitab4.5_0004689g0020 Nicotiana tabacum HOM05D005140 ORTHO05D006288 1.3e-203 713.4 433 78.1
vmacro14121 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 3.8e-203 711.8 420 81.4
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 4.2e-202 708.4 435 79.3
EL10Ac5g12239 Beta vulgaris HOM05D005140 ORTHO05D006288 1.4e-200 703.4 475 72.8
Medtr5g013580 Medicago truncatula HOM05D005140 ORTHO05D006288 7.5e-199 697.6 424 77.8
Aqoxy3G02576 Aquilegia oxysepala HOM05D005140 ORTHO05D006288 1.7e-198 696.4 422 78.2
Nn1g00730 Nelumbo nucifera HOM05D005140 ORTHO05D006288 6.3e-198 694.5 417 78.9
MD00G1132300 Malus domestica HOM05D005140 ORTHO05D006288 1.0e-195 687.2 451 75.2
PSO063G3549 Papaver somniferum HOM05D005140 ORTHO05D006288 2.9e-195 685.6 425 78.1
PSO782G2508 Papaver somniferum HOM05D005140 ORTHO05D006288 5.0e-195 684.9 425 78.1
TPR.G22969 Trifolium pratense HOM05D005140 ORTHO05D006288 5.0e-195 684.9 426 77.9
MD06G1045500 Malus domestica HOM05D005140 ORTHO05D006288 1.5e-194 683.3 457 74.0
Carub.0007s2375 Capsella rubella HOM05D005140 ORTHO05D006288 8.0e-193 677.6 443 73.1
Ciclev10019303m.g Citrus clementina HOM05D005140 ORTHO05D006288 6.8e-192 674.5 416 77.9
THA.LOC104798349 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 6.8e-192 674.5 439 74.5
Sp7g16510 Schrenkiella parvula HOM05D005140 ORTHO05D006288 3.7e-190 668.7 441 71.9
GSVIVG01013286001 Vitis vinifera HOM05D005140 ORTHO05D006288 6.3e-190 667.9 350 89.7
AT4G17620 Arabidopsis thaliana HOM05D005140 ORTHO05D006288 7.0e-189 664.5 445 71.7
HanXRQChr03g0089631 Helianthus annuus HOM05D005140 ORTHO05D006288 2.7e-188 662.5 427 76.1
CARHR224350 Cardamine hirsuta HOM05D005140 ORTHO05D006288 1.3e-187 660.2 450 70.7
BcaNung00074 Brassica carinata HOM05D005140 ORTHO05D006288 2.9e-187 659.1 444 71.4
BcaNung03452 Brassica carinata HOM05D005140 ORTHO05D006288 1.5e-186 656.8 417 74.3
A03p50570 Brassica napus HOM05D005140 ORTHO05D006288 1.9e-186 656.4 445 71.2
BcaC06g33554 Brassica carinata HOM05D005140 ORTHO05D006288 1.2e-185 653.7 438 71.7
Thhalv10024864m.g Eutrema salsugineum HOM05D005140 ORTHO05D006288 4.0e-184 648.7 440 71.4
BraA03t14147Z Brassica rapa HOM05D005140 ORTHO05D006288 6.8e-184 647.9 445 70.3
BolC7t45397H Brassica oleracea HOM05D005140 ORTHO05D006288 2.0e-183 646.4 434 71.9
C01p11300 Brassica napus HOM05D005140 ORTHO05D006288 5.7e-183 644.8 435 71.7
C07p48890 Brassica napus HOM05D005140 ORTHO05D006288 1.3e-182 643.7 434 71.7
HPP92_020526 Vanilla planifolia HOM05D005140 ORTHO05D006288 1.2e-180 637.1 424 74.1
AUR62007191 Chenopodium quinoa HOM05D005140 ORTHO05D006288 4.5e-180 635.2 377 79.8
SGA_v2.0_scaffold6G03141 Striga asiatica HOM05D005140 ORTHO05D006288 5.9e-180 634.8 386 78.8
FAN18G3556 Fragaria x ananassa HOM05D005140 ORTHO05D006288 7.7e-180 634.4 398 77.6
Aa31LG6G380 Aethionema arabicum HOM05D005140 ORTHO05D006288 1.5e-178 630.2 434 69.8
ATR0665G273 Amborella trichopoda HOM05D005140 ORTHO05D006288 2.5e-178 629.4 424 70.3
A01p09690 Brassica napus HOM05D005140 ORTHO05D006288 7.3e-178 627.9 449 68.6
BraA01t00912Z Brassica rapa HOM05D005140 ORTHO05D006288 4.7e-177 625.2 457 67.2
BcaC09g51625 Brassica carinata HOM05D005140 ORTHO05D006288 8.9e-176 620.9 436 69.7
Lj9A525T29 Lonicera japonica HOM05D005140 ORTHO05D006288 3.7e-174 615.5 381 78.5
MBI04_g38568_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 1.4e-173 613.6 416 72.8
HPP92_028085 Vanilla planifolia HOM05D005140 ORTHO05D006288 4.1e-173 612.1 424 72.6
BcaNung06713 Brassica carinata HOM05D005140 ORTHO05D006288 5.4e-173 611.7 390 73.8
HPP92_022002 Vanilla planifolia HOM05D005140 ORTHO05D006288 9.2e-173 610.9 443 67.9
Lj2C253G13 Lonicera japonica HOM05D005140 ORTHO05D006288 8.6e-171 604.4 474 66.7
Aa31LG9G15140 Aethionema arabicum HOM05D005140 ORTHO05D006288 1.1e-170 604.0 453 65.8
THA.LOC104814458 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 5.6e-170 601.7 448 65.8
CDE04G2928 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 2.0e-167 593.2 401 72.6
VMungo0239G0001 Vigna mungo HOM05D005140 ORTHO05D006288 9.5e-162 574.3 315 85.1
AUR62018812 Chenopodium quinoa HOM05D005140 ORTHO05D006288 4.0e-160 568.9 305 85.9
Sc01g0007900 Simmondsia chinensis HOM05D005140 ORTHO05D006288 3.5e-156 555.8 321 82.6
MBI04_g46822_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 8.6e-155 551.2 343 76.1
Os05g0392100 Oryza sativa ssp. japonica HOM05D005140 ORTHO05D006288 6.0e-140 501.9 335 71.6
Hma1.2p1_1672F.1_g296780 Hydrangea macrophylla HOM05D005140 ORTHO05D006288 3.2e-133 479.6 311 74.9
Zm00001eb287280 Zea mays HOM05D005140 ORTHO05D006288 7.1e-133 478.4 293 77.8
GSVIVG01013283001 Vitis vinifera HOM05D005140 ORTHO05D006288 6.7e-131 471.9 430 60.0
AagrBONN_evm.TU.Sc2ySwM_344.2637 Anthoceros agrestis HOM05D005140 ORTHO05D006288 3.7e-121 439.5 401 54.4
SHI07711 Sapria himalayana HOM05D005140 ORTHO05D006288 2.4e-120 436.8 357 63.9
Pp3c10_5020 Physcomitrium patens HOM05D005140 ORTHO05D006288 8.4e-118 428.3 447 50.8
CDE12G0612 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 2.1e-116 423.7 329 63.8
Mapoly0062s0029 Marchantia polymorpha HOM05D005140 ORTHO05D006288 3.9e-115 419.5 364 56.6
BolC1t01096H Brassica oleracea HOM05D005140 ORTHO05D006288 1.9e-106 390.6 218 80.3
SMO259G0041 Selaginella moellendorffii HOM05D005140 ORTHO05D006288 4.3e-106 389.4 325 54.5
Oeu017029.1 Olea europaea HOM05D005140 ORTHO05D006288 2.4e-104 383.6 191 92.1
Peaxi162Scf00715g00010 Petunia axillaris HOM05D005140 ORTHO05D006288 1.6e-92 344.4 230 73.9
CBR_g48842 Chara braunii HOM05D005140 ORTHO05D006288 3.0e-91 340.1 427 46.8
Cpa.g.sc98.58 Carica papaya HOM05D005140 ORTHO05D006288 4.5e-87 326.2 259 64.5
Oeu062963.3 Olea europaea HOM05D005140 ORTHO05D006288 3.0e-75 287.0 259 60.2
QL12p008508 Quercus lobata HOM05D005140 ORTHO05D006288 3.8e-62 243.4 190 66.3
Psat1g146680 Pisum sativum HOM05D005140 ORTHO05D006288 1.4e-51 208.4 114 86.0
Oeu017031.1 Olea europaea HOM05D005140 ORTHO05D006288 1.1e-48 198.7 136 75.0
Thecc.03G238400 Theobroma cacao HOM05D005140 ORTHO05D006288 2.3e-43 181.0 167 60.5
MCO13G373 Micromonas commoda HOM05D005140 ORTHO05D006288 4.4e-34 150.2 317 33.1
Cpa.g.c32337.2 Carica papaya HOM05D005140 ORTHO05D006288 2.2e-33 147.9 104 72.1
SEGI_19334 Sequoiadendron giganteum HOM05D005140 ORTHO05D000001 2.8e-28 131.0 77 77.9
MD10G1199900 Malus domestica HOM05D005140 ORTHO05D006288 3.1e-27 127.5 79 77.2
Cre07.g338400 Chlamydomonas reinhardtii HOM05D005140 ORTHO05D006288 2.0e-26 124.8 270 32.6
Cfa024662 Carpinus fangiana HOM05D005140 ORTHO05D006288 4.3e-21 107.1 320 27.8
GSVIVG01001794001 Vitis vinifera HOM05D005140 ORTHO05D006288 7.3e-21 106.3 80 65.0
DCAR_016064 Daucus carota HOM05D005140 ORTHO05D006288 4.2e-16 90.5 51 80.4
ECA233G4689 Erigeron canadensis HOM05D005140 ORTHO05D006288 5.1e-14 83.6 88 51.1
Gohir.A08G083762 Gossypium hirsutum HOM05D005140 ORTHO05D006288 1.4e-08 65.5 29 89.7
Psat6g107920 Pisum sativum HOM05D032184 ORTHO05D330502 4.6e-07 60.5 28 92.9
BolC1t01095H Brassica oleracea HOM05D005140 ORTHO05D006288 6.0e-07 60.1 62 53.2


User provided reference genes

Program Settings