Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.11448 Avicennia marina HOM05D004647 ORTHO05D005349 9.4e-133 476.9 241 100.0
Migut.I00016 Erythranthe guttata HOM05D004647 ORTHO05D005349 7.7e-119 430.6 241 88.0
SGA_v2.0_scaffold90G27942 Striga asiatica HOM05D004647 ORTHO05D005349 6.1e-116 421.0 260 80.4
Oeu035987.1 Olea europaea HOM05D004647 ORTHO05D005349 8.6e-110 400.6 241 81.7
unitig_52.g17486 Utricularia gibba HOM05D004647 ORTHO05D005349 1.6e-108 396.4 241 83.0
Actinidia19099 Actinidia chinensis HOM05D004647 ORTHO05D005349 3.6e-108 395.2 241 80.1
vmacro16607 Vaccinium macrocarpon HOM05D004647 ORTHO05D005349 3.0e-107 392.1 241 79.3
Rhsim12G0164400 Rhododendron simsii HOM05D004647 ORTHO05D005349 3.4e-106 388.7 241 78.4
TWI15G0781 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 3.4e-106 388.7 240 79.2
Cc04_g13970 Coffea canephora HOM05D004647 ORTHO05D005349 1.7e-105 386.3 241 78.4
SalBow3G4197 Salvia bowleyana HOM05D004647 ORTHO05D005349 4.9e-105 384.8 283 70.7
GSVIVG01007738001 Vitis vinifera HOM05D004647 ORTHO05D005349 1.4e-104 383.3 234 81.2
CiPaw.11G026900 Carya illinoinensis HOM05D004647 ORTHO05D005349 5.4e-104 381.3 240 78.3
Potri.012G080300 Populus trichocarpa HOM05D004647 ORTHO05D005349 5.4e-104 381.3 240 77.1
Atru.chr9.2461 Acer truncatum HOM05D004647 ORTHO05D005349 2.0e-103 379.4 241 78.0
Lj5A124T65 Lonicera japonica HOM05D004647 ORTHO05D005349 2.0e-103 379.4 232 80.6
Aqoxy3G01032 Aquilegia oxysepala HOM05D004647 ORTHO05D005349 2.7e-103 379.0 236 77.5
Sabra12G0057400 Salix brachista HOM05D004647 ORTHO05D005349 2.7e-103 379.0 240 77.1
arahy.Tifrunner.gnm1.ann1.HI7WIW Arachis hypogaea HOM05D004647 ORTHO05D005349 3.5e-103 378.6 241 77.2
Prupe.5G174300 Prunus persica HOM05D004647 ORTHO05D005349 4.6e-103 378.3 240 75.8
PGR083G2070 Punica granatum HOM05D004647 ORTHO05D005349 4.6e-103 378.3 241 76.3
arahy.Tifrunner.gnm1.ann1.T8C5SJ Arachis hypogaea HOM05D004647 ORTHO05D005349 7.8e-103 377.5 241 77.2
Lsat_1_v5_gn_4_75321 Lactuca sativa HOM05D004647 ORTHO05D005349 7.8e-103 377.5 242 76.9
TPR.G14966 Trifolium pratense HOM05D004647 ORTHO05D005349 1.0e-102 377.1 241 76.3
Medtr5g043110 Medicago truncatula HOM05D004647 ORTHO05D005349 2.3e-102 375.9 241 75.5
TPR.G19928 Trifolium pratense HOM05D004647 ORTHO05D005349 2.3e-102 375.9 241 76.3
Hma1.2p1_0701F.1_g205920 Hydrangea macrophylla HOM05D004647 ORTHO05D005349 3.0e-102 375.6 241 78.0
Gohir.A03G097600 Gossypium hirsutum HOM05D004647 ORTHO05D005349 3.9e-102 375.2 241 76.8
Ciclev10021986m.g Citrus clementina HOM05D004647 ORTHO05D005349 6.6e-102 374.4 241 76.8
Nitab4.5_0000003g0580 Nicotiana tabacum HOM05D004647 ORTHO05D005349 6.6e-102 374.4 241 75.5
Nitab4.5_0000866g0170 Nicotiana tabacum HOM05D004647 ORTHO05D005349 8.6e-102 374.0 241 75.5
Glyma.01G053700 Glycine max HOM05D004647 ORTHO05D005349 1.5e-101 373.2 241 75.1
Gorai.005G137000 Gossypium raimondii HOM05D004647 ORTHO05D005349 1.5e-101 373.2 241 76.3
Psat2g127400 Pisum sativum HOM05D004647 ORTHO05D005349 1.5e-101 373.2 241 75.9
TWI53G1063 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 1.9e-101 372.9 240 77.5
Hund09433 Selenicereus undatus HOM05D004647 ORTHO05D005349 3.3e-101 372.1 241 75.1
DCAR_016485 Daucus carota HOM05D004647 ORTHO05D005349 4.3e-101 371.7 237 76.8
THA.LOC104807116 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 7.3e-101 370.9 239 74.9
THA.LOC104824976 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 7.3e-101 370.9 239 74.9
Sopen06g027740 Solanum pennellii HOM05D004647 ORTHO05D005349 1.2e-100 370.2 234 76.9
Glyma.02G112000 Glycine max HOM05D004647 ORTHO05D005349 1.6e-100 369.8 241 73.9
Lj2g0019057 Lotus japonicus HOM05D004647 ORTHO05D005349 1.6e-100 369.8 241 74.3
Gohir.D02G116700 Gossypium hirsutum HOM05D004647 ORTHO05D005349 3.6e-100 368.6 241 75.5
PSO478G0146 Papaver somniferum HOM05D004647 ORTHO05D005349 6.2e-100 367.9 240 75.4
QL10p011820 Quercus lobata HOM05D004647 ORTHO05D005349 6.2e-100 367.9 240 76.2
PGSC0003DMG400027091 Solanum tuberosum HOM05D004647 ORTHO05D005349 6.2e-100 367.9 234 76.1
PSO017G4490 Papaver somniferum HOM05D004647 ORTHO05D005349 8.0e-100 367.5 238 76.1
Phvul.002G091200 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 1.4e-99 366.7 241 73.9
AUR62030968 Chenopodium quinoa HOM05D004647 ORTHO05D005349 1.8e-99 366.3 241 73.0
CANSAT64G1060 Cannabis sativa HOM05D004647 ORTHO05D005349 2.3e-99 365.9 232 76.3
Sc10g0010060 Simmondsia chinensis HOM05D004647 ORTHO05D005349 4.0e-99 365.2 234 75.6
Solyc06g071460.3 Solanum lycopersicum HOM05D004647 ORTHO05D005349 5.2e-99 364.8 237 75.9
HPP92_005895 Vanilla planifolia HOM05D004647 ORTHO05D005349 6.8e-99 364.4 241 73.0
Phvul.003G111100 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 8.9e-99 364.0 241 73.9
Eucgr.B00371 Eucalyptus grandis HOM05D004647 ORTHO05D005349 1.2e-98 363.6 233 76.0
CARHR059710 Cardamine hirsuta HOM05D004647 ORTHO05D005349 1.5e-98 363.2 239 72.4
CSS0008435 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 2.6e-98 362.5 241 75.5
ATR0680G372 Amborella trichopoda HOM05D004647 ORTHO05D005349 4.4e-98 361.7 241 72.2
CAN.G628.78 Capsicum annuum HOM05D004647 ORTHO05D005349 4.4e-98 361.7 241 72.6
HanXRQChr16g0504011 Helianthus annuus HOM05D004647 ORTHO05D005349 4.4e-98 361.7 241 74.3
Lalb_Chr10g0098541 Lupinus albus HOM05D004647 ORTHO05D005349 1.3e-97 360.1 241 74.3
Sp7g29960 Schrenkiella parvula HOM05D004647 ORTHO05D005349 4.9e-97 358.2 239 73.6
Carub.0004s0503 Capsella rubella HOM05D004647 ORTHO05D005349 6.4e-97 357.8 239 71.5
Ca_06453_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.1e-96 357.1 222 78.8
AL7G19680 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 1.4e-96 356.7 239 71.1
ClCG06G016990 Citrullus lanatus HOM05D004647 ORTHO05D005349 1.4e-96 356.7 240 73.3
COL.COLO4_30028 Corchorus olitorius HOM05D004647 ORTHO05D005349 1.4e-96 356.7 274 67.2
EL10Ac5g10752 Beta vulgaris HOM05D004647 ORTHO05D005349 1.9e-96 356.3 228 75.0
FAN18G2734 Fragaria x ananassa HOM05D004647 ORTHO05D005349 2.4e-96 355.9 233 73.4
Sed0013198 Sechium edule HOM05D004647 ORTHO05D005349 3.2e-96 355.5 240 72.9
BcaC01g01036 Brassica carinata HOM05D004647 ORTHO05D005349 5.4e-96 354.8 239 71.5
RcHm_v2.0_Chr7g0193601 Rosa chinensis HOM05D004647 ORTHO05D005349 5.4e-96 354.8 233 73.4
A08p18330 Brassica napus HOM05D004647 ORTHO05D005349 9.2e-96 354.0 239 71.5
BraA08t33790Z Brassica rapa HOM05D004647 ORTHO05D005349 9.2e-96 354.0 239 71.5
AUR62008215 Chenopodium quinoa HOM05D004647 ORTHO05D005349 2.0e-95 352.8 266 66.2
MBI16_g05634_MAGBIO Magnolia biondii HOM05D004647 ORTHO05D005349 2.0e-95 352.8 249 70.7
AT4G32175 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 3.5e-95 352.1 236 72.5
MD06G1174300 Malus domestica HOM05D004647 ORTHO05D005349 4.6e-95 351.7 240 72.5
FAN13G1078 Fragaria x ananassa HOM05D004647 ORTHO05D005349 6.0e-95 351.3 233 72.5
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 7.8e-95 350.9 240 72.9
BolC3t21057H Brassica oleracea HOM05D004647 ORTHO05D005349 1.0e-94 350.5 239 71.1
FAN04G0366 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.3e-94 350.1 233 73.0
FAN08G1047 Fragaria x ananassa HOM05D004647 ORTHO05D005349 2.3e-94 349.4 233 72.1
ECA232G2959 Erigeron canadensis HOM05D004647 ORTHO05D005349 3.9e-94 348.6 241 71.8
Manes.14G066300 Manihot esculenta HOM05D004647 ORTHO05D005349 6.6e-94 347.8 212 79.7
Os01g0891400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 1.5e-93 346.7 233 72.1
BcaB03g12733 Brassica carinata HOM05D004647 ORTHO05D005349 4.3e-93 345.1 239 70.3
TAR374G0909 Trochodendron aralioides HOM05D004647 ORTHO05D005349 4.3e-93 345.1 208 83.2
AT2G25355 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 5.6e-93 344.7 239 68.6
Thhalv10026115m.g Eutrema salsugineum HOM05D004647 ORTHO05D005349 7.3e-93 344.4 239 69.9
Os01g0661400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 7.3e-93 344.4 233 71.2
QL02p100995 Quercus lobata HOM05D004647 ORTHO05D005349 7.3e-93 344.4 340 55.6
AL4G16790 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 1.2e-92 343.6 239 67.8
Thecc.03G011300 Theobroma cacao HOM05D004647 ORTHO05D005349 6.2e-92 341.3 213 78.9
Zm00001eb157720 Zea mays HOM05D004647 ORTHO05D005349 4.4e-90 335.1 234 70.5
CARHR240100 Cardamine hirsuta HOM05D004647 ORTHO05D005349 2.4e-88 329.3 239 65.3
FAN18G2015 Fragaria x ananassa HOM05D004647 ORTHO05D005349 3.2e-88 328.9 288 59.4
DCAR_028017 Daucus carota HOM05D004647 ORTHO05D005349 9.2e-88 327.4 199 79.9
Peaxi162Scf00689g00228 Petunia axillaris HOM05D004647 ORTHO05D005349 1.2e-87 327.0 199 79.4
Cpa.g.sc124.56 Carica papaya HOM05D004647 ORTHO05D005349 1.6e-87 326.6 202 80.2
CDE11G0116 Ceratophyllum demersum HOM05D004647 ORTHO05D005349 3.5e-87 325.5 214 75.2
FvH4_5g05270 Fragaria vesca HOM05D004647 ORTHO05D005349 1.7e-86 323.2 211 73.5
MD06G1174500 Malus domestica HOM05D004647 ORTHO05D005349 2.8e-84 315.8 242 66.5
Zm00001eb157740 Zea mays HOM05D004647 ORTHO05D005349 5.8e-82 308.1 209 71.8
Haze_07464 Corylus avellana HOM05D004647 ORTHO05D005349 6.0e-79 298.1 241 65.6
Carub.0007s0838 Capsella rubella HOM05D004647 ORTHO05D005349 4.3e-77 292.0 190 72.6
Aa31LG2G17760 Aethionema arabicum HOM05D004647 ORTHO05D005349 2.8e-76 289.3 239 61.5
Dinv02900 Davidia involucrata HOM05D004647 ORTHO05D005349 4.0e-75 285.4 176 78.4
Mapoly0033s0011 Marchantia polymorpha HOM05D004647 ORTHO05D005349 2.0e-74 283.1 232 58.6
THA.LOC104801749 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.4e-72 276.9 167 79.0
CsaV3_1G001530 Cucumis sativus L. HOM05D004647 ORTHO05D005349 2.7e-71 272.7 170 79.4
Pp3c9_4960 Physcomitrium patens HOM05D004647 ORTHO05D005349 6.6e-70 268.1 238 56.3
SMO358G0755 Selaginella moellendorffii HOM05D004647 ORTHO05D005349 6.9e-67 258.1 222 55.0
THA.LOC104815465 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 8.1e-60 234.6 149 73.8
Nn3g16872 Nelumbo nucifera HOM05D004647 ORTHO05D005349 4.0e-59 232.3 136 82.4
MELO3C026290.2 Cucumis melo HOM05D004647 ORTHO05D005349 1.9e-53 213.4 135 78.5
SEGI_17588 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 6.2e-52 208.4 141 71.6
SEGI_39775 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 6.2e-52 208.4 141 71.6
AagrBONN_evm.TU.Sc2ySwM_117.3294 Anthoceros agrestis HOM05D004647 ORTHO05D005349 9.0e-51 204.5 191 52.4
Cre07.g319900 Chlamydomonas reinhardtii HOM05D004647 ORTHO05D005349 1.0e-49 201.1 223 45.7
VMungo1215G1703 Vigna mungo HOM05D004647 ORTHO05D005349 1.0e-49 201.1 125 76.8
Sed0007118 Sechium edule HOM05D004647 ORTHO05D005349 4.9e-49 198.7 182 58.8
CSS0025503 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 5.5e-48 195.3 127 75.6
Zm00001eb359590 Zea mays HOM05D004647 ORTHO05D005349 3.5e-47 192.6 131 70.2
PSO384G3338 Papaver somniferum HOM05D004647 ORTHO05D005349 1.8e-46 190.3 169 61.5
VMungo1215G3307 Vigna mungo HOM05D004647 ORTHO05D005349 7.4e-45 184.9 121 72.7
QL02p101061 Quercus lobata HOM05D004647 ORTHO05D005349 1.1e-43 181.0 120 74.2
QL02p101105 Quercus lobata HOM05D004647 ORTHO05D005349 1.1e-43 181.0 120 74.2
Medtr5g009430 Medicago truncatula HOM05D004647 ORTHO05D005349 1.4e-40 170.6 122 67.2
CBR_g61059 Chara braunii HOM05D004647 ORTHO05D005349 1.9e-40 170.2 234 41.0
Ca_07701_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 3.4e-34 149.4 129 62.0
CAN.G110.1 Capsicum annuum HOM05D004647 ORTHO05D005349 2.9e-33 146.4 143 54.5
CSS0039197 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.6e-31 140.6 121 64.5
PRCOL_00002933 Prasinoderma coloniale HOM05D004647 ORTHO05D005349 3.6e-31 139.4 161 46.0
Glyma.19G045000 Glycine max HOM05D004647 ORTHO05D005349 4.6e-31 139.0 121 59.5
Oeu005668.1 Olea europaea HOM05D004647 ORTHO05D005349 3.0e-30 136.3 85 74.1
SEGI_00924 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 8.8e-30 134.8 101 66.3
Cc00_g25260 Coffea canephora HOM05D004647 ORTHO05D005349 3.7e-28 129.4 81 76.5
Cc00_g18100 Coffea canephora HOM05D004647 ORTHO05D005349 1.8e-27 127.1 89 67.4
Cfa024128 Carpinus fangiana HOM05D004647 ORTHO05D005349 2.0e-26 123.6 219 36.5
PGSC0003DMG400042364 Solanum tuberosum HOM05D004647 ORTHO05D005349 8.5e-25 118.2 91 60.4
SEGI_26695 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 7.2e-24 115.2 89 58.4
Ca_24957_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.6e-23 114.0 106 57.5
Ca_22423_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.3e-20 104.4 100 58.0
Potri.015G075400 Populus trichocarpa HOM05D004647 ORTHO05D005349 2.8e-20 103.2 72 65.3
MCO01G631 Micromonas commoda HOM05D004647 ORTHO05D005349 9.1e-19 98.2 206 29.6
Cc00_g33640 Coffea canephora HOM05D004647 ORTHO05D005349 5.0e-17 92.4 51 80.4
CSS0048825 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.5e-16 90.9 53 83.0
SEGI_09107 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.2e-13 81.3 62 64.5
MD14G1181100 Malus domestica HOM05D004647 ORTHO05D005349 4.1e-11 72.8 163 34.4
QL02p027014 Quercus lobata HOM05D004647 ORTHO05D005349 1.5e-08 64.3 39 74.4
SHI17043 Sapria himalayana HOM05D004647 ORTHO05D005349 9.4e-08 61.6 30 93.3
QL02p024044 Quercus lobata HOM05D004647 ORTHO05D005349 6.1e-07 58.9 32 78.1


User provided reference genes

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