Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C033916.2 Cucumis melo HOM05D002159 ORTHO05D017878 8.7e-105 383.6 193 100.0
MELO3C035667.2 Cucumis melo HOM05D002159 ORTHO05D017878 4.9e-31 138.7 81 85.2
MELO3C006919.2 Cucumis melo HOM05D002159 ORTHO05D005625 3.5e-29 132.5 81 80.2
CsaV3_3G017220 Cucumis sativus L. HOM05D002159 ORTHO05D005625 3.5e-29 132.5 81 80.2
ClCG05G008140 Citrullus lanatus HOM05D002201 ORTHO05D005625 8.6e-28 127.9 74 85.1
Manes.01G126800 Manihot esculenta HOM05D002159 ORTHO05D005625 2.1e-26 123.2 73 80.8
Lalb_Chr03g0034671 Lupinus albus HOM05D002159 ORTHO05D005625 4.7e-26 122.1 73 79.5
Thecc.03G179100 Theobroma cacao HOM05D002159 ORTHO05D005625 6.1e-26 121.7 92 67.4
Duzib084G0847 Durio zibethinus HOM05D002159 ORTHO05D005625 8.0e-26 121.3 79 77.2
MD01G1203600 Malus domestica HOM05D002159 ORTHO05D005625 1.8e-25 120.2 76 75.0
Potri.001G231800 Populus trichocarpa HOM05D002159 ORTHO05D005625 1.8e-25 120.2 73 78.1
MD07G1272900 Malus domestica HOM05D002159 ORTHO05D005625 3.1e-25 119.4 76 73.7
Prupe.2G296200 Prunus persica HOM05D002159 ORTHO05D005625 3.1e-25 119.4 79 74.7
PGR142G0288 Punica granatum HOM05D002159 ORTHO05D005625 3.1e-25 119.4 76 75.0
Sed0009742 Sechium edule HOM05D002159 ORTHO05D005625 5.2e-25 118.6 74 79.7
Haze_13669 Corylus avellana HOM05D002159 ORTHO05D005625 6.8e-25 118.2 100 64.0
Os09g0569400 Oryza sativa ssp. japonica HOM05D002159 ORTHO05D005625 6.8e-25 118.2 79 72.2
QL09p013785 Quercus lobata HOM05D002159 ORTHO05D005625 6.8e-25 118.2 73 76.7
Glyma.09G136900 Glycine max HOM05D002159 ORTHO05D005625 8.9e-25 117.9 73 76.7
Glyma.16G182300 Glycine max HOM05D002159 ORTHO05D005625 8.9e-25 117.9 73 76.7
Lsat_1_v5_gn_2_132660 Lactuca sativa HOM05D002159 ORTHO05D005625 8.9e-25 117.9 92 64.1
Gohir.A12G256700 Gossypium hirsutum HOM05D002159 ORTHO05D005625 1.2e-24 117.5 92 65.2
Gohir.D12G258000 Gossypium hirsutum HOM05D002159 ORTHO05D005625 1.2e-24 117.5 92 65.2
Gorai.008G276300 Gossypium raimondii HOM05D002159 ORTHO05D005625 1.2e-24 117.5 92 65.2
Duzib205G0713 Durio zibethinus HOM05D002159 ORTHO05D005625 1.5e-24 117.1 92 65.2
Eucgr.K00275 Eucalyptus grandis HOM05D002159 ORTHO05D005625 1.5e-24 117.1 73 76.7
TWI34G0379 Tripterygium wilfordii HOM05D002159 ORTHO05D005625 1.5e-24 117.1 79 73.4
CANSAT21G0489 Cannabis sativa HOM05D002159 ORTHO05D005625 2.0e-24 116.7 77 75.3
Ca_14555_v3 Cicer arietinum L. HOM05D002159 ORTHO05D005625 2.0e-24 116.7 76 71.1
Lj2g0019958 Lotus japonicus HOM05D002159 ORTHO05D005625 2.0e-24 116.7 73 74.0
Phvul.004G114000 Phaseolus vulgaris HOM05D002159 ORTHO05D005625 2.0e-24 116.7 73 75.3
CiPaw.03G108100 Carya illinoinensis HOM05D002159 ORTHO05D005625 2.6e-24 116.3 73 75.3
Medtr1g050492 Medicago truncatula HOM05D002159 ORTHO05D005625 2.6e-24 116.3 76 71.1
Sabra16G0139100 Salix brachista HOM05D002159 ORTHO05D005625 2.6e-24 116.3 71 78.9
TPR.G8152 Trifolium pratense HOM05D002159 ORTHO05D005625 2.6e-24 116.3 76 71.1
VMungo0464G2116 Vigna mungo HOM05D002159 ORTHO05D005625 2.6e-24 116.3 73 75.3
Ciclev10004414m.g Citrus clementina HOM05D002159 ORTHO05D005625 3.4e-24 115.9 78 75.6
Glyma.11G170601 Glycine max HOM05D002159 ORTHO05D005625 4.4e-24 115.5 73 75.3
Nn1g01521 Nelumbo nucifera HOM05D002159 ORTHO05D005625 1.7e-23 113.6 76 72.4
ECA238G4262 Erigeron canadensis HOM05D002159 ORTHO05D005625 2.2e-23 113.2 82 70.7
Hma1.2p1_1604F.1_g293320 Hydrangea macrophylla HOM05D002159 ORTHO05D005625 2.2e-23 113.2 79 69.6
Hund04761 Selenicereus undatus HOM05D002159 ORTHO05D005625 2.9e-23 112.8 81 69.1
Dinv28421 Davidia involucrata HOM05D002159 ORTHO05D005625 3.7e-23 112.5 92 60.9
HanXRQChr14g0462121 Helianthus annuus HOM05D002159 ORTHO05D005625 4.9e-23 112.1 73 74.0
PSO478G3748 Papaver somniferum HOM05D002159 ORTHO05D005625 4.9e-23 112.1 82 65.9
PSO782G0249 Papaver somniferum HOM05D002159 ORTHO05D005625 4.9e-23 112.1 82 65.9
TAR629G0581 Trochodendron aralioides HOM05D002159 ORTHO05D005625 4.9e-23 112.1 76 71.1
Atru.chr1.430 Acer truncatum HOM05D002159 ORTHO05D005625 6.4e-23 111.7 80 72.5
BcaNung05469 Brassica carinata HOM05D002159 ORTHO05D005625 1.4e-22 110.5 93 62.4
A06p34690 Brassica napus HOM05D002159 ORTHO05D005625 1.4e-22 110.5 93 62.4
C07p43800 Brassica napus HOM05D002159 ORTHO05D005625 1.4e-22 110.5 93 62.4
BraA06t26396Z Brassica rapa HOM05D002159 ORTHO05D005625 1.4e-22 110.5 93 62.4
BolC7t44909H Brassica oleracea HOM05D002159 ORTHO05D005625 1.9e-22 110.2 81 69.1
RcHm_v2.0_Chr1g0377681 Rosa chinensis HOM05D002159 ORTHO05D005625 1.9e-22 110.2 92 59.8
Sc13g0008820 Simmondsia chinensis HOM05D002159 ORTHO05D005625 1.9e-22 110.2 79 69.6
CSS0008751 Camellia sinensis var. sinensis HOM05D002159 ORTHO05D005625 2.4e-22 109.8 92 60.9
CSS0044503 Camellia sinensis var. sinensis HOM05D002159 ORTHO05D005625 2.4e-22 109.8 92 60.9
BcaNung05470 Brassica carinata HOM05D002159 ORTHO05D005625 3.2e-22 109.4 93 61.3
GSVIVG01028919001 Vitis vinifera HOM05D002159 ORTHO05D005625 3.2e-22 109.4 76 67.1
vmacro06665 Vaccinium macrocarpon HOM05D002159 ORTHO05D005625 5.4e-22 108.6 79 67.1
THA.LOC104821393 Tarenaya hassleriana HOM05D002159 ORTHO05D005625 7.0e-22 108.2 77 68.8
AT5G23880 Arabidopsis thaliana HOM05D002159 ORTHO05D005625 9.2e-22 107.8 90 63.3
EL10Ac3g05612 Beta vulgaris HOM05D002159 ORTHO05D005625 9.2e-22 107.8 74 70.3
Sp2g23400 Schrenkiella parvula HOM05D002159 ORTHO05D005625 9.2e-22 107.8 79 68.4
Thhalv10003707m.g Eutrema salsugineum HOM05D002159 ORTHO05D005625 1.2e-21 107.5 81 66.7
Carub.0006s2160 Capsella rubella HOM05D002159 ORTHO05D005625 1.6e-21 107.1 81 66.7
AL6G35190 Arabidopsis lyrata HOM05D002159 ORTHO05D005625 2.0e-21 106.7 81 65.4
CARHR189680 Cardamine hirsuta HOM05D002159 ORTHO05D005625 2.0e-21 106.7 81 65.4
AUR62015961 Chenopodium quinoa HOM05D002159 ORTHO05D005625 2.7e-21 106.3 73 69.9
Cc02_g02790 Coffea canephora HOM05D002159 ORTHO05D005625 2.7e-21 106.3 73 67.1
CAN.G1175.3 Capsicum annuum HOM05D002159 ORTHO05D005625 3.5e-21 105.9 92 57.6
Actinidia25881 Actinidia chinensis HOM05D002159 ORTHO05D005625 4.6e-21 105.5 79 65.8
Aqoxy7G00327 Aquilegia oxysepala HOM05D002159 ORTHO05D005625 4.6e-21 105.5 76 68.4
FvH4_7g29660 Fragaria vesca HOM05D002159 ORTHO05D005625 6.0e-21 105.1 79 63.3
FAN03G0857 Fragaria x ananassa HOM05D002159 ORTHO05D005625 6.0e-21 105.1 79 63.3
FAN03G1172 Fragaria x ananassa HOM05D002159 ORTHO05D005625 6.0e-21 105.1 79 63.3
FAN06G3579 Fragaria x ananassa HOM05D002159 ORTHO05D005625 6.0e-21 105.1 79 63.3
FAN06G4426 Fragaria x ananassa HOM05D002159 ORTHO05D005625 6.0e-21 105.1 79 63.3
Rhsim03G0187300 Rhododendron simsii HOM05D002159 ORTHO05D005625 6.0e-21 105.1 79 64.6
Solyc03g025540.3 Solanum lycopersicum HOM05D002159 ORTHO05D005625 6.0e-21 105.1 92 57.6
Sopen03g004380 Solanum pennellii HOM05D002159 ORTHO05D005625 6.0e-21 105.1 92 57.6
AUR62021167 Chenopodium quinoa HOM05D002159 ORTHO05D005625 7.8e-21 104.8 73 68.5
Oeu028430.1 Olea europaea HOM05D002159 ORTHO05D005625 7.8e-21 104.8 73 65.8
arahy.Tifrunner.gnm1.ann1.F9YRCX Arachis hypogaea HOM05D002159 ORTHO05D005625 1.0e-20 104.4 73 69.9
Nitab4.5_0000084g0030 Nicotiana tabacum HOM05D002159 ORTHO05D005625 1.0e-20 104.4 92 57.6
CDE06G0059 Ceratophyllum demersum HOM05D002159 ORTHO05D005625 1.7e-20 103.6 78 65.4
Peaxi162Scf00444g00532 Petunia axillaris HOM05D002159 ORTHO05D005625 1.7e-20 103.6 92 57.6
SGA_v2.0_scaffold10G05332 Striga asiatica HOM05D002159 ORTHO05D005625 3.9e-20 102.4 82 61.0
COL.COLO4_28055 Corchorus olitorius HOM05D002159 ORTHO05D017878 6.6e-20 101.7 63 74.6
HPP92_025730 Vanilla planifolia HOM05D002159 ORTHO05D005625 6.6e-20 101.7 81 63.0
Migut.F01111 Erythranthe guttata HOM05D002159 ORTHO05D005625 8.6e-20 101.3 76 64.5
DCAR_026334 Daucus carota HOM05D002159 ORTHO05D005625 1.1e-19 100.9 93 59.1
FAN10G0118 Fragaria x ananassa HOM05D002159 ORTHO05D005625 1.1e-19 100.9 79 62.0
Actinidia34126 Actinidia chinensis HOM05D002159 ORTHO05D005625 1.5e-19 100.5 79 62.0
Zm00001eb162800 Zea mays HOM05D002159 ORTHO05D005625 2.5e-19 99.8 79 62.0
Nitab4.5_0004439g0160 Nicotiana tabacum HOM05D002159 ORTHO05D005625 4.3e-19 99.0 74 64.9
FAN01G0872 Fragaria x ananassa HOM05D002159 ORTHO05D005625 5.6e-19 98.6 85 58.8
Cpa.g.c26789.4 Carica papaya HOM05D002159 ORTHO05D005625 7.3e-19 98.2 61 78.7
Cfa023191 Carpinus fangiana HOM05D002159 ORTHO05D005625 7.3e-19 98.2 64 76.6
Lj8C239G4 Lonicera japonica HOM05D002159 ORTHO05D005625 1.2e-18 97.4 75 69.3
Aa31LG11G3180 Aethionema arabicum HOM05D002159 ORTHO05D005625 3.6e-18 95.9 108 48.1
MELO3C034434.2 Cucumis melo HOM05D002159 ORTHO05D017878 8.1e-18 94.7 55 87.3
Lj1E1000G1 Lonicera japonica HOM05D002159 ORTHO05D017878 1.3e-15 87.4 63 68.3
HPP92_025733 Vanilla planifolia HOM05D002159 ORTHO05D005625 6.4e-15 85.1 68 64.7
ATR0680G292 Amborella trichopoda HOM05D002159 ORTHO05D005625 9.2e-14 81.3 77 55.8
RcHm_v2.0_Chr1g0379161 Rosa chinensis HOM05D002159 ORTHO05D005625 1.6e-13 80.5 76 56.6
AagrBONN_evm.TU.Sc2ySwM_117.3689 Anthoceros agrestis HOM05D002159 ORTHO05D005625 6.0e-13 78.6 77 50.6
SalBow2G1087 Salvia bowleyana HOM05D002159 ORTHO05D005625 1.3e-12 77.4 54 70.4
MD01G1203700 Malus domestica HOM05D000507 ORTHO05D000416 3.0e-12 76.3 49 73.5
Pp3c9_11100 Physcomitrium patens HOM05D002159 ORTHO05D005625 3.0e-12 76.3 77 53.2
SMO111G0062 Selaginella moellendorffii HOM05D002159 ORTHO05D005625 3.9e-12 75.9 77 49.4
Ah.13g068620 Amaranthus hybridus HOM05D002159 ORTHO05D005625 6.6e-12 75.1 55 69.1
Mapoly0007s0176 Marchantia polymorpha HOM05D002159 ORTHO05D005625 6.6e-12 75.1 79 49.4
DCAR_002643 Daucus carota HOM05D002159 ORTHO05D017878 9.5e-11 71.2 65 60.0
BcaNung01838 Brassica carinata HOM05D002159 ORTHO05D005625 3.6e-10 69.3 69 56.5
FvH4_7g30021 Fragaria vesca HOM05D002159 ORTHO05D017878 2.0e-08 63.5 55 56.4
FAN06G3485 Fragaria x ananassa HOM05D002159 ORTHO05D017878 2.0e-08 63.5 55 56.4


User provided reference genes

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