Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C032627.2 Cucumis melo HOM05D002702 ORTHO05D010786 3.0e-143 511.9 260 100.0
CsaV3_4G028190 Cucumis sativus L. HOM05D002702 ORTHO05D010786 8.3e-109 397.5 272 79.4
ClCG11G015790 Citrullus lanatus HOM05D002702 ORTHO05D010786 2.1e-80 303.1 202 80.2
Sed0020965 Sechium edule HOM05D002702 ORTHO05D010786 5.8e-62 241.9 201 64.7
CiPaw.15G041500 Carya illinoinensis HOM05D002702 ORTHO05D003416 6.1e-19 99.0 205 36.6
CiPaw.08G118400 Carya illinoinensis HOM05D002702 ORTHO05D003416 7.9e-19 98.6 199 36.2
PGR031G3358 Punica granatum HOM05D002702 ORTHO05D003416 3.0e-18 96.7 208 37.5
Actinidia39727 Actinidia chinensis HOM05D002702 ORTHO05D019466 6.7e-18 95.5 166 39.2
GSVIVG01029946001 Vitis vinifera HOM05D002702 ORTHO05D003416 7.4e-17 92.0 209 36.8
TAR636G0479 Trochodendron aralioides HOM05D002702 ORTHO05D003416 9.7e-17 91.7 189 36.5
PSO210G0347 Papaver somniferum HOM05D002702 ORTHO05D003416 1.4e-15 87.8 194 35.1
TWI60G0137 Tripterygium wilfordii HOM05D002702 ORTHO05D003416 1.8e-15 87.4 206 34.5
Haze_20120 Corylus avellana HOM05D002702 ORTHO05D003416 2.4e-15 87.0 179 37.4
RcHm_v2.0_Chr4g0409121 Rosa chinensis HOM05D002702 ORTHO05D003416 2.4e-15 87.0 144 39.6
PSO832G1528 Papaver somniferum HOM05D002702 ORTHO05D003416 4.1e-15 86.3 193 35.8
Gohir.D11G170800 Gossypium hirsutum HOM05D002702 ORTHO05D003416 7.0e-15 85.5 200 32.5
Gorai.007G182800 Gossypium raimondii HOM05D002702 ORTHO05D003416 7.0e-15 85.5 200 32.5
Gohir.A13G160900 Gossypium hirsutum HOM05D002702 ORTHO05D003416 2.6e-14 83.6 188 34.6
Duzib128G1433 Durio zibethinus HOM05D002702 ORTHO05D003416 3.5e-14 83.2 140 37.9
Cc02_g13440 Coffea canephora HOM05D002702 ORTHO05D003416 4.5e-14 82.8 158 35.4
FvH4_4g11810 Fragaria vesca HOM05D002702 ORTHO05D003416 4.5e-14 82.8 200 32.5
Gohir.D13G166200 Gossypium hirsutum HOM05D002702 ORTHO05D003416 5.9e-14 82.4 189 33.9
FAN17G2691 Fragaria x ananassa HOM05D002702 ORTHO05D003416 7.7e-14 82.0 203 32.0
MELO3C015360.2 Cucumis melo HOM05D002702 ORTHO05D003416 1.0e-13 81.6 222 33.8
Gorai.013G196300 Gossypium raimondii HOM05D002702 ORTHO05D003416 1.0e-13 81.6 189 33.9
THA.LOC104816256 Tarenaya hassleriana HOM05D002702 ORTHO05D003416 1.0e-13 81.6 216 32.4
Gohir.A11G164500 Gossypium hirsutum HOM05D002702 ORTHO05D003416 1.7e-13 80.9 213 31.5
CAN.G756.30 Capsicum annuum HOM05D002702 ORTHO05D003416 2.9e-13 80.1 201 36.3
FAN12G2138 Fragaria x ananassa HOM05D002702 ORTHO05D003416 2.9e-13 80.1 200 34.5
FAN12G2960 Fragaria x ananassa HOM05D002702 ORTHO05D003416 2.9e-13 80.1 200 34.5
Prupe.1G180700 Prunus persica HOM05D002702 ORTHO05D003416 3.8e-13 79.7 191 33.0
Lalb_Chr02g0157421 Lupinus albus HOM05D002702 ORTHO05D003416 6.5e-13 79.0 154 37.7
Os05g0305100 Oryza sativa ssp. japonica HOM05D002702 ORTHO05D003416 6.5e-13 79.0 144 38.9
Potri.009G039100 Populus trichocarpa HOM05D002702 ORTHO05D003416 6.5e-13 79.0 220 33.6
PGR042G0279 Punica granatum HOM05D002702 ORTHO05D003416 6.5e-13 79.0 186 34.9
Sopen01g035560 Solanum pennellii HOM05D002702 ORTHO05D003416 6.5e-13 79.0 201 32.8
arahy.Tifrunner.gnm1.ann1.9I2R1K Arachis hypogaea HOM05D002702 ORTHO05D003416 8.5e-13 78.6 195 32.8
Solyc01g088720.3 Solanum lycopersicum HOM05D002702 ORTHO05D003416 8.5e-13 78.6 201 32.3
Aqoxy5G01199 Aquilegia oxysepala HOM05D002702 ORTHO05D003416 1.1e-12 78.2 209 32.5
Aqoxy4G00023 Aquilegia oxysepala HOM05D002702 ORTHO05D003416 1.5e-12 77.8 208 32.2
Dinv25037 Davidia involucrata HOM05D002702 ORTHO05D003416 1.5e-12 77.8 140 38.6
Hund20999 Selenicereus undatus HOM05D022334 ORTHO05D019466 1.5e-12 77.8 185 35.1
Ciclev10019321m.g Citrus clementina HOM05D002702 ORTHO05D003416 1.9e-12 77.4 211 33.2
CDE10G0041 Ceratophyllum demersum HOM05D002702 ORTHO05D003416 2.5e-12 77.0 145 35.9
Haze_06436 Corylus avellana HOM05D002702 ORTHO05D003416 2.5e-12 77.0 198 32.8
Dinv17316 Davidia involucrata HOM05D002702 ORTHO05D003416 2.5e-12 77.0 214 32.7
Psat3g086200 Pisum sativum HOM05D002702 ORTHO05D003416 2.5e-12 77.0 137 38.0
Nn7g37357 Nelumbo nucifera HOM05D002702 ORTHO05D003416 3.2e-12 76.6 204 31.4
Atru.chr2.91 Acer truncatum HOM05D002702 ORTHO05D003416 4.2e-12 76.3 138 38.4
CsaV3_1G039340 Cucumis sativus L. HOM05D002702 ORTHO05D003416 4.2e-12 76.3 166 35.5
MBI17_g29780_MAGBIO Magnolia biondii HOM05D002702 ORTHO05D003416 4.2e-12 76.3 165 34.5
ATR0697G089 Amborella trichopoda HOM05D002702 ORTHO05D003416 5.5e-12 75.9 157 36.3
PSO170G0409 Papaver somniferum HOM05D002702 ORTHO05D003416 5.5e-12 75.9 196 33.2
Potri.001G246100 Populus trichocarpa HOM05D002702 ORTHO05D003416 5.5e-12 75.9 214 31.8
Lalb_Chr02g0157411 Lupinus albus HOM05D002702 ORTHO05D003416 7.2e-12 75.5 189 32.3
Peaxi162Scf00978g00036 Petunia axillaris HOM05D002702 ORTHO05D003416 9.4e-12 75.1 176 31.2
DCAR_015631 Daucus carota HOM05D002702 ORTHO05D003416 1.2e-11 74.7 173 31.2
Dinv17311 Davidia involucrata HOM05D002702 ORTHO05D003416 1.2e-11 74.7 220 32.3
vmacro10812 Vaccinium macrocarpon HOM05D002702 ORTHO05D003416 1.2e-11 74.7 215 33.5
Actinidia07964 Actinidia chinensis HOM05D002702 ORTHO05D003416 2.1e-11 73.9 209 33.0
ClCG03G016660 Citrullus lanatus HOM05D002702 ORTHO05D003416 2.1e-11 73.9 212 30.7
Zm00001eb294470 Zea mays HOM05D002702 ORTHO05D003416 2.1e-11 73.9 107 41.1
Medtr6g027510 Medicago truncatula HOM05D002702 ORTHO05D003416 2.7e-11 73.6 208 34.6
QL05p040842 Quercus lobata HOM05D002702 ORTHO05D003416 2.7e-11 73.6 181 33.7
SGA_v2.0_scaffold17G07984 Striga asiatica HOM05D002702 ORTHO05D003416 2.7e-11 73.6 171 35.7
Zm00001eb342490 Zea mays HOM05D002702 ORTHO05D003416 2.7e-11 73.6 120 38.3
Migut.K00214 Erythranthe guttata HOM05D002702 ORTHO05D003416 3.6e-11 73.2 204 31.4
Manes.08G152300 Manihot esculenta HOM05D002702 ORTHO05D003416 3.6e-11 73.2 231 28.6
Ca_04466_v3 Cicer arietinum L. HOM05D002702 ORTHO05D003416 4.7e-11 72.8 212 31.1
Lj4g0005434 Lotus japonicus HOM05D002702 ORTHO05D003416 4.7e-11 72.8 215 31.2
CANSAT80G1653 Cannabis sativa HOM05D002702 ORTHO05D003416 6.1e-11 72.4 191 33.0
TPR.G34790 Trifolium pratense HOM05D002702 ORTHO05D003416 6.1e-11 72.4 145 35.2
MD04G1033900 Malus domestica HOM05D002702 ORTHO05D003416 8.0e-11 72.0 116 37.9
Zm00001eb190030 Zea mays HOM05D002702 ORTHO05D003416 8.0e-11 72.0 107 40.2
BolC3t16631H Brassica oleracea HOM05D002702 ORTHO05D003416 1.4e-10 71.2 171 29.2
Lj2g0010098 Lotus japonicus HOM05D002702 ORTHO05D003416 1.4e-10 71.2 221 29.0
Lj4g0025158 Lotus japonicus HOM05D002702 ORTHO05D003416 1.4e-10 71.2 133 36.8
Sp3g07740 Schrenkiella parvula HOM05D002702 ORTHO05D003416 1.4e-10 71.2 154 32.5
Sed0008593 Sechium edule HOM05D002702 ORTHO05D003416 1.4e-10 71.2 144 34.7
C03p43620 Brassica napus HOM05D002702 ORTHO05D003416 1.8e-10 70.9 228 28.5
FvH4_5g32090 Fragaria vesca HOM05D002702 ORTHO05D003416 1.8e-10 70.9 184 35.9
FAN07G2025 Fragaria x ananassa HOM05D002702 ORTHO05D003416 1.8e-10 70.9 184 29.9
Lsat_1_v5_gn_1_126300 Lactuca sativa HOM05D002702 ORTHO05D003416 1.8e-10 70.9 214 26.6
BcaC01g04231 Brassica carinata HOM05D002702 ORTHO05D003416 2.3e-10 70.5 228 28.5
QL05p014746 Quercus lobata HOM05D002702 ORTHO05D003416 2.3e-10 70.5 190 34.7
RcHm_v2.0_Chr7g0228131 Rosa chinensis HOM05D002702 ORTHO05D003416 3.0e-10 70.1 184 34.2
unitig_748.g8246 Utricularia gibba HOM05D002702 ORTHO05D003416 3.0e-10 70.1 160 33.1
A03p35990 Brassica napus HOM05D002702 ORTHO05D003416 4.0e-10 69.7 139 32.4
FAN13G2753 Fragaria x ananassa HOM05D002702 ORTHO05D003416 4.0e-10 69.7 183 34.4
BcaB03g11605 Brassica carinata HOM05D002702 ORTHO05D003416 5.2e-10 69.3 125 35.2
CSS0039994 Camellia sinensis var. sinensis HOM05D002702 ORTHO05D003416 5.2e-10 69.3 218 30.3
vmacro20470 Vaccinium macrocarpon HOM05D002702 ORTHO05D003416 5.2e-10 69.3 215 31.6
Aa31LG3G1860 Aethionema arabicum HOM05D002702 ORTHO05D003416 6.7e-10 68.9 209 28.7
Thecc.05G241000 Theobroma cacao HOM05D002702 ORTHO05D003416 6.7e-10 68.9 215 30.2
Nitab4.5_0003719g0060 Nicotiana tabacum HOM05D002702 ORTHO05D003416 1.1e-09 68.2 192 30.7
AL3G20510 Arabidopsis lyrata HOM05D002702 ORTHO05D003416 1.5e-09 67.8 153 32.0
Psat3g086160 Pisum sativum HOM05D002702 ORTHO05D015070 1.5e-09 67.8 187 34.2
COL.COLO4_20084 Corchorus olitorius HOM05D002702 ORTHO05D003416 2.0e-09 67.4 152 32.9
Sabra16G0149300 Salix brachista HOM05D002702 ORTHO05D003416 2.0e-09 67.4 220 29.5
HPP92_016841 Vanilla planifolia HOM05D002702 ORTHO05D015070 2.0e-09 67.4 201 30.8
Carub.0003s0847 Capsella rubella HOM05D002702 ORTHO05D003416 2.6e-09 67.0 210 31.0
Sc25g0001160 Simmondsia chinensis HOM05D002702 ORTHO05D003416 2.6e-09 67.0 114 38.6
CARHR083720 Cardamine hirsuta HOM05D002702 ORTHO05D003416 4.4e-09 66.2 162 30.9
TPR.G9547 Trifolium pratense HOM05D002702 ORTHO05D003416 4.4e-09 66.2 211 30.8
AT3G09360 Arabidopsis thaliana HOM05D002702 ORTHO05D003416 5.7e-09 65.9 132 35.6
Cpa.g.c27574 Carica papaya HOM05D002702 ORTHO05D003416 5.7e-09 65.9 123 37.4
DCAR_031564 Daucus carota HOM05D002702 ORTHO05D003416 5.7e-09 65.9 271 27.7
EL10Ac3g05092 Beta vulgaris HOM05D002702 ORTHO05D003416 7.5e-09 65.5 167 30.5
CDE02G4627 Ceratophyllum demersum HOM05D002702 ORTHO05D010786 7.5e-09 65.5 187 34.8
CBR_g31712 Chara braunii HOM05D002702 ORTHO05D003416 7.5e-09 65.5 170 32.4
Thhalv10011362m.g Eutrema salsugineum HOM05D002702 ORTHO05D003416 9.7e-09 65.1 174 32.2
Nitab4.5_0002341g0020 Nicotiana tabacum HOM05D002702 ORTHO05D003416 9.7e-09 65.1 173 29.5
EL10Ac3g05292 Beta vulgaris HOM05D022334 ORTHO05D019466 1.3e-08 64.7 149 33.6
Ca_08321_v3 Cicer arietinum L. HOM05D002702 ORTHO05D003416 1.3e-08 64.7 224 28.6
FAN08G0285 Fragaria x ananassa HOM05D002702 ORTHO05D003416 1.3e-08 64.7 120 37.5
BraA03t12771Z Brassica rapa HOM05D002702 ORTHO05D003416 2.2e-08 63.9 139 30.9
DCAR_013573 Daucus carota HOM05D002702 ORTHO05D003416 2.2e-08 63.9 201 27.9
Nitab4.5_0000563g0080 Nicotiana tabacum HOM05D002702 ORTHO05D003416 2.2e-08 63.9 172 30.2
Zm00001eb294450 Zea mays HOM05D002702 ORTHO05D003416 2.8e-08 63.5 93 40.9
Zm00001eb304800 Zea mays HOM05D002702 ORTHO05D003416 2.8e-08 63.5 108 37.0
Peaxi162Scf01419g00119 Petunia axillaris HOM05D011191 ORTHO05D010786 3.7e-08 63.2 173 31.2
FAN21G1527 Fragaria x ananassa HOM05D014033 ORTHO05D010786 8.2e-08 62.0 191 32.5
SMO196G0286 Selaginella moellendorffii HOM05D002702 ORTHO05D003416 8.2e-08 62.0 127 36.2
Zm00001eb087600 Zea mays HOM05D000276 ORTHO05D003855 8.2e-08 62.0 107 36.4
Atru.chr2.1532 Acer truncatum HOM05D002702 ORTHO05D003416 1.1e-07 61.6 68 44.1
Eucgr.A02144 Eucalyptus grandis HOM05D002702 ORTHO05D003416 1.1e-07 61.6 210 28.1
Thhalv10020503m.g Eutrema salsugineum HOM05D002702 ORTHO05D003416 1.1e-07 61.6 120 35.0
FvH4_3g11660 Fragaria vesca HOM05D014033 ORTHO05D010786 1.1e-07 61.6 191 32.5
Nitab4.5_0000406g0150 Nicotiana tabacum HOM05D011191 ORTHO05D010786 2.4e-07 60.5 187 27.8
Rhsim07G0091200 Rhododendron simsii HOM05D011191 ORTHO05D010786 2.4e-07 60.5 94 39.4
FAN16G2119 Fragaria x ananassa HOM05D014033 ORTHO05D010786 3.1e-07 60.1 191 31.9
Ca_08320_v3 Cicer arietinum L. HOM05D002702 ORTHO05D015070 4.1e-07 59.7 58 48.3
Gohir.A06G141400 Gossypium hirsutum HOM05D021816 ORTHO05D010786 5.3e-07 59.3 210 30.5
AUR62019394 Chenopodium quinoa HOM05D022334 ORTHO05D019466 7.0e-07 58.9 198 33.3
Nitab4.5_0012106g0010 Nicotiana tabacum HOM05D011191 ORTHO05D010786 7.0e-07 58.9 175 28.6
Rhsim05G0035300 Rhododendron simsii HOM05D002702 ORTHO05D003416 9.1e-07 58.5 230 28.3
Zm00001eb077940 Zea mays HOM05D003030 ORTHO05D015070 1.6e-06 57.8 70 40.0
Medtr7g086730 Medicago truncatula HOM05D002702 ORTHO05D003416 2.0e-06 57.4 206 30.1
Aqoxy4G00362 Aquilegia oxysepala HOM05D002702 ORTHO05D003416 2.7e-06 57.0 215 27.9
Glyma.16G035400 Glycine max HOM05D002702 ORTHO05D003416 2.7e-06 57.0 154 29.2
Glyma.19G117700 Glycine max HOM05D002702 ORTHO05D003416 3.5e-06 56.6 155 31.6
QL05p040799 Quercus lobata HOM05D002702 ORTHO05D003416 3.5e-06 56.6 146 37.0
HPP92_004334 Vanilla planifolia HOM05D002702 ORTHO05D003416 3.5e-06 56.6 198 28.3
ECA233G5306 Erigeron canadensis HOM05D002702 ORTHO05D003416 4.5e-06 56.2 212 26.9
Pp3c8_20180 Physcomitrium patens HOM05D002702 ORTHO05D003416 7.7e-06 55.5 182 26.9
Potri.001G082800 Populus trichocarpa HOM05D011191 ORTHO05D010786 7.7e-06 55.5 165 30.9


User provided reference genes

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