Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C027311.2 Cucumis melo HOM05D005073 ORTHO05D006166 1.8e-96 355.9 177 100.0
MELO3C022795.2 Cucumis melo HOM05D005073 ORTHO05D006166 2.3e-67 259.2 153 86.3
CsaV3_5G023620 Cucumis sativus L. HOM05D005073 ORTHO05D006166 1.5e-66 256.5 153 85.0
ClCG03G008990 Citrullus lanatus HOM05D005073 ORTHO05D006166 4.9e-62 241.5 153 79.7
Sed0012840 Sechium edule HOM05D005073 ORTHO05D006166 2.8e-57 225.7 148 76.4
MELO3C027298.2 Cucumis melo HOM05D005073 ORTHO05D006166 2.7e-52 209.1 111 93.7
Sabra02G0073100 Salix brachista HOM05D005073 ORTHO05D006166 3.8e-46 188.7 149 64.4
QL12p035942 Quercus lobata HOM05D005073 ORTHO05D006166 3.2e-45 185.7 149 63.1
CiPaw.05G232900 Carya illinoinensis HOM05D005073 ORTHO05D006166 1.6e-44 183.3 149 63.1
CANSAT54G2794 Cannabis sativa HOM05D005073 ORTHO05D006166 2.1e-44 183.0 150 61.3
Potri.002G092600 Populus trichocarpa HOM05D005073 ORTHO05D006166 4.6e-44 181.8 149 63.8
Ciclev10003846m.g Citrus clementina HOM05D005073 ORTHO05D006166 1.3e-43 180.3 149 62.4
GSVIVG01008990001 Vitis vinifera HOM05D005073 ORTHO05D006166 1.3e-43 180.3 153 60.1
Manes.18G070400 Manihot esculenta HOM05D005073 ORTHO05D006166 1.7e-43 179.9 149 62.4
MD15G1355000 Malus domestica HOM05D005073 ORTHO05D006166 1.9e-42 176.4 153 58.2
TAR381G0980 Trochodendron aralioides HOM05D005073 ORTHO05D006166 1.9e-42 176.4 149 59.1
MD08G1177300 Malus domestica HOM05D005073 ORTHO05D006166 2.5e-42 176.0 149 61.1
Prupe.1G511900 Prunus persica HOM05D005073 ORTHO05D006166 5.6e-42 174.9 146 61.6
FAN04G2698 Fragaria x ananassa HOM05D005073 ORTHO05D006166 6.2e-41 171.4 153 57.5
Cpa.g.sc66.92 Carica papaya HOM05D005073 ORTHO05D006166 1.1e-40 170.6 149 58.4
Thecc.08G112000 Theobroma cacao HOM05D005073 ORTHO05D006166 1.1e-40 170.6 149 59.1
RcHm_v2.0_Chr7g0239951 Rosa chinensis HOM05D005073 ORTHO05D006166 1.8e-40 169.9 153 57.5
Hund26651 Selenicereus undatus HOM05D005073 ORTHO05D006166 1.8e-40 169.9 149 56.4
Sc12g0004220 Simmondsia chinensis HOM05D005073 ORTHO05D006166 1.8e-40 169.9 149 55.0
FAN13G1954 Fragaria x ananassa HOM05D005073 ORTHO05D006166 2.4e-40 169.5 153 56.9
EL10Ac1g01681 Beta vulgaris HOM05D005073 ORTHO05D006166 3.1e-40 169.1 149 53.7
Nn1g05274 Nelumbo nucifera HOM05D005073 ORTHO05D006166 3.1e-40 169.1 153 54.9
Psat5g137200 Pisum sativum HOM05D005073 ORTHO05D006166 3.1e-40 169.1 151 57.0
Hma1.2p1_0120F.1_g057030 Hydrangea macrophylla HOM05D005073 ORTHO05D006166 5.3e-40 168.3 149 56.4
Hma1.2p1_0120F.1_g057040 Hydrangea macrophylla HOM05D005073 ORTHO05D006166 5.3e-40 168.3 149 56.4
Lalb_Chr23g0270691 Lupinus albus HOM05D005073 ORTHO05D006166 9.0e-40 167.5 151 58.3
FAN18G0258 Fragaria x ananassa HOM05D005073 ORTHO05D006166 1.2e-39 167.2 153 56.2
COL.COLO4_16466 Corchorus olitorius HOM05D005073 ORTHO05D006166 1.5e-39 166.8 144 61.1
Peaxi162Scf00310g00019 Petunia axillaris HOM05D005073 ORTHO05D006166 1.5e-39 166.8 154 54.5
SGA_v2.0_scaffold48G18021 Striga asiatica HOM05D005073 ORTHO05D006166 2.0e-39 166.4 149 59.1
Medtr3g073790 Medicago truncatula HOM05D005073 ORTHO05D006166 2.6e-39 166.0 151 56.3
Nitab4.5_0009824g0010 Nicotiana tabacum HOM05D005073 ORTHO05D006166 2.6e-39 166.0 153 53.6
Ah.16g109540 Amaranthus hybridus HOM05D005073 ORTHO05D006166 3.4e-39 165.6 149 53.7
Cc10_g05860 Coffea canephora HOM05D005073 ORTHO05D006166 3.4e-39 165.6 149 56.4
arahy.Tifrunner.gnm1.ann1.K8DV01 Arachis hypogaea HOM05D005073 ORTHO05D006166 4.4e-39 165.2 151 57.0
arahy.Tifrunner.gnm1.ann1.T10PLA Arachis hypogaea HOM05D005073 ORTHO05D006166 4.4e-39 165.2 151 57.0
Rhsim06G0085400 Rhododendron simsii HOM05D005073 ORTHO05D006166 4.4e-39 165.2 149 55.0
TPR.G34614 Trifolium pratense HOM05D005073 ORTHO05D006166 4.4e-39 165.2 151 56.3
Ca_15226_v3 Cicer arietinum L. HOM05D005073 ORTHO05D006166 5.8e-39 164.9 151 56.3
Duzib041G0650 Durio zibethinus HOM05D005073 ORTHO05D006166 5.8e-39 164.9 149 57.0
FvH4_5g38010 Fragaria vesca HOM05D005073 ORTHO05D006166 5.8e-39 164.9 153 56.2
Oeu024557.1 Olea europaea HOM05D005073 ORTHO05D006166 5.8e-39 164.9 153 57.5
VMungo1309G2662 Vigna mungo HOM05D005073 ORTHO05D006166 5.8e-39 164.9 151 57.6
Lj4C715T1 Lonicera japonica HOM05D005073 ORTHO05D006166 7.6e-39 164.5 153 54.9
Actinidia30750 Actinidia chinensis HOM05D005073 ORTHO05D006166 9.9e-39 164.1 149 56.4
AUR62034358 Chenopodium quinoa HOM05D005073 ORTHO05D006166 1.3e-38 163.7 153 52.3
HanXRQChr10g0278501 Helianthus annuus HOM05D005073 ORTHO05D006166 1.7e-38 163.3 149 53.7
CSS0000538 Camellia sinensis var. sinensis HOM05D005073 ORTHO05D006166 2.2e-38 162.9 149 55.7
CSS0031049 Camellia sinensis var. sinensis HOM05D005073 ORTHO05D006166 2.2e-38 162.9 149 55.7
Migut.C00179 Erythranthe guttata HOM05D005073 ORTHO05D006166 2.2e-38 162.9 150 56.0
Sopen04g028940 Solanum pennellii HOM05D005073 ORTHO05D006166 2.2e-38 162.9 155 53.5
FAN08G1532 Fragaria x ananassa HOM05D005073 ORTHO05D006166 2.9e-38 162.5 165 53.3
Eucgr.F02969 Eucalyptus grandis HOM05D005073 ORTHO05D006166 3.8e-38 162.2 153 54.2
Lj1g0017290 Lotus japonicus HOM05D005073 ORTHO05D006166 6.4e-38 161.4 151 55.6
PSO210G7769 Papaver somniferum HOM05D005073 ORTHO05D006166 6.4e-38 161.4 149 53.7
PSO447G0212 Papaver somniferum HOM05D005073 ORTHO05D006166 6.4e-38 161.4 149 53.7
Glyma.06G106000 Glycine max HOM05D005073 ORTHO05D006166 8.4e-38 161.0 150 56.7
PGSC0003DMG400009470 Solanum tuberosum HOM05D005073 ORTHO05D006166 8.4e-38 161.0 155 52.9
Nitab4.5_0000469g0190 Nicotiana tabacum HOM05D005073 ORTHO05D006166 1.1e-37 160.6 153 52.3
ECA246G0226 Erigeron canadensis HOM05D005073 ORTHO05D006166 1.4e-37 160.2 149 55.0
Gorai.009G239900 Gossypium raimondii HOM05D005073 ORTHO05D006166 1.4e-37 160.2 149 57.0
SGA_v2.0_scaffold24G10294 Striga asiatica HOM05D005073 ORTHO05D006166 1.4e-37 160.2 157 52.9
DCAR_008707 Daucus carota HOM05D005073 ORTHO05D006166 2.4e-37 159.5 149 52.3
PGR044G0799 Punica granatum HOM05D005073 ORTHO05D006166 3.2e-37 159.1 151 55.0
SalBow7G0210 Salvia bowleyana HOM05D005073 ORTHO05D006166 3.2e-37 159.1 150 56.7
Gohir.A05G229400 Gossypium hirsutum HOM05D005073 ORTHO05D006166 7.1e-37 157.9 149 55.7
AUR62022347 Chenopodium quinoa HOM05D005073 ORTHO05D006166 9.3e-37 157.5 153 49.0
MBI02_g30882_MAGBIO Magnolia biondii HOM05D005073 ORTHO05D006166 1.2e-36 157.1 149 53.7
ATR0564G350 Amborella trichopoda HOM05D005073 ORTHO05D006166 1.1e-34 150.6 149 49.7
Aqoxy1G01853 Aquilegia oxysepala HOM05D005073 ORTHO05D006166 1.1e-34 150.6 149 51.0
Lsat_1_v5_gn_6_102120 Lactuca sativa HOM05D005073 ORTHO05D006166 1.1e-34 150.6 153 51.0
Os08g0407000 Oryza sativa ssp. japonica HOM05D005073 ORTHO05D006166 1.1e-34 150.6 153 50.3
AL2G38280 Arabidopsis lyrata HOM05D005073 ORTHO05D006166 4.3e-34 148.7 152 50.0
vmacro21228 Vaccinium macrocarpon HOM05D005073 ORTHO05D006166 7.3e-34 147.9 208 41.8
AT1G78010 Arabidopsis thaliana HOM05D005073 ORTHO05D006166 1.3e-33 147.1 152 50.0
THA.LOC104810083 Tarenaya hassleriana HOM05D005073 ORTHO05D006166 8.1e-33 144.4 157 47.8
HPP92_016434 Vanilla planifolia HOM05D005073 ORTHO05D006166 1.1e-32 144.1 149 52.3
HPP92_016476 Vanilla planifolia HOM05D005073 ORTHO05D006166 1.1e-32 144.1 149 52.3
Atru.BG.242.p Acer truncatum HOM05D005073 ORTHO05D006166 3.1e-32 142.5 153 50.3
Zm00001eb178820 Zea mays HOM05D005073 ORTHO05D006166 3.1e-32 142.5 149 50.3
BcaC08g47633 Brassica carinata HOM05D005073 ORTHO05D006166 4.0e-32 142.1 147 48.3
C06p51930 Brassica napus HOM05D005073 ORTHO05D006166 4.0e-32 142.1 147 48.3
BolC6t40215H Brassica oleracea HOM05D005073 ORTHO05D006166 4.0e-32 142.1 147 48.3
SEGI_22824 Sequoiadendron giganteum HOM05D005073 ORTHO05D006166 6.9e-32 141.4 154 48.1
A07p43250 Brassica napus HOM05D005073 ORTHO05D006166 9.0e-32 141.0 147 48.3
BraA07t31846Z Brassica rapa HOM05D005073 ORTHO05D006166 1.5e-31 140.2 146 47.9
Sp5g33150 Schrenkiella parvula HOM05D005073 ORTHO05D006166 5.8e-31 138.3 153 47.1
CDE03G0055 Ceratophyllum demersum HOM05D005073 ORTHO05D006166 7.6e-31 137.9 149 49.7
unitig_0.g2069 Utricularia gibba HOM05D005073 ORTHO05D006166 9.9e-31 137.5 149 47.0
Aa31LG4G8070 Aethionema arabicum HOM05D005073 ORTHO05D006166 2.2e-30 136.3 151 48.3
Thhalv10018349m.g Eutrema salsugineum HOM05D005073 ORTHO05D006166 3.8e-30 135.6 153 46.4
AagrBONN_evm.TU.Sc2ySwM_228.2622 Anthoceros agrestis HOM05D005073 ORTHO05D006166 4.8e-25 118.6 183 33.3
CBR_g9146 Chara braunii HOM05D005073 ORTHO05D006166 3.1e-24 115.9 121 49.6
Pp3c13_12510 Physcomitrium patens HOM05D005073 ORTHO05D006166 3.1e-24 115.9 122 45.9
Pp3c13_12516 Physcomitrium patens HOM05D005073 ORTHO05D006166 3.1e-24 115.9 122 45.9
Mapoly0034s0013 Marchantia polymorpha HOM05D005073 ORTHO05D006166 2.2e-22 109.8 167 36.5
Haze_00571 Corylus avellana HOM05D005073 ORTHO05D006166 1.2e-20 104.0 96 56.2
Cre16.g681238 Chlamydomonas reinhardtii HOM05D005073 ORTHO05D006166 3.5e-20 102.4 171 35.7
SMO137G0212 Selaginella moellendorffii HOM05D005073 ORTHO05D006166 1.5e-18 97.1 154 37.0
MELO3C033719.2 Cucumis melo HOM05D005073 ORTHO05D006166 3.3e-18 95.9 52 90.4
PRCOL_00000127 Prasinoderma coloniale HOM05D005073 ORTHO05D006166 4.2e-13 79.0 185 32.4
MCO14G420 Micromonas commoda HOM05D005073 ORTHO05D006166 6.7e-11 71.6 91 39.6
Gohir.D05G231700 Gossypium hirsutum HOM05D005073 ORTHO05D006166 1.8e-08 63.5 76 51.3


User provided reference genes

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