Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024305.2 Cucumis melo HOM05D005942 ORTHO05D007209 0.0e+00 1459.1 746 100.0
CsaV3_7G033920 Cucumis sativus L. HOM05D005942 ORTHO05D007209 0.0e+00 1348.6 758 91.4
ClCG09G001410 Citrullus lanatus HOM05D005942 ORTHO05D007209 0.0e+00 1275.4 759 87.0
Sed0028190 Sechium edule HOM05D005942 ORTHO05D007209 0.0e+00 1088.2 734 78.1
CiPaw.02G130800 Carya illinoinensis HOM05D005942 ORTHO05D007209 7.1e-264 914.1 752 62.5
QL05p001132 Quercus lobata HOM05D005942 ORTHO05D007209 4.6e-263 911.4 756 63.1
QL05p000862 Quercus lobata HOM05D005942 ORTHO05D007209 2.3e-262 909.1 756 63.0
Haze_16138 Corylus avellana HOM05D005942 ORTHO05D007209 6.3e-244 847.8 916 53.3
Potri.003G073000 Populus trichocarpa HOM05D005942 ORTHO05D007209 4.7e-239 831.6 768 56.6
TWI14G0802 Tripterygium wilfordii HOM05D005942 ORTHO05D007209 3.9e-238 828.6 754 58.2
Ciclev10024928m.g Citrus clementina HOM05D005942 ORTHO05D007209 2.0e-237 826.2 753 57.6
Prupe.3G030900 Prunus persica HOM05D005942 ORTHO05D007209 2.0e-237 826.2 759 58.6
CANSAT56G3801 Cannabis sativa HOM05D005942 ORTHO05D007209 1.2e-231 807.0 689 60.4
GSVIVG01016664001 Vitis vinifera HOM05D005942 ORTHO05D007209 7.4e-229 797.7 733 57.7
Sabra03G0043700 Salix brachista HOM05D005942 ORTHO05D007209 1.7e-228 796.6 798 54.1
Hma1.2p1_0090F.1_g045800 Hydrangea macrophylla HOM05D005942 ORTHO05D007209 2.4e-227 792.7 727 56.9
Dinv20380 Davidia involucrata HOM05D005942 ORTHO05D007209 4.5e-226 788.5 742 56.9
CSS0026354 Camellia sinensis var. sinensis HOM05D005942 ORTHO05D007209 5.9e-226 788.1 691 59.5
TAR624G0006 Trochodendron aralioides HOM05D005942 ORTHO05D007209 1.0e-225 787.3 761 55.5
PGR102G3180 Punica granatum HOM05D005942 ORTHO05D007209 1.7e-225 786.6 721 56.3
FvH4_6g35860 Fragaria vesca HOM05D005942 ORTHO05D007209 2.5e-224 782.7 764 55.4
Thecc.06G130500 Theobroma cacao HOM05D005942 ORTHO05D007209 2.1e-223 779.6 727 57.2
Dinv37817 Davidia involucrata HOM05D005942 ORTHO05D007209 1.4e-222 776.9 707 57.6
Cfa003459 Carpinus fangiana HOM05D005942 ORTHO05D007209 1.8e-222 776.5 1117 43.6
Nn3g21985 Nelumbo nucifera HOM05D005942 ORTHO05D007209 2.3e-222 776.2 743 56.0
FAN09G3780 Fragaria x ananassa HOM05D005942 ORTHO05D007209 1.2e-221 773.9 764 55.2
Lalb_Chr15g0076691 Lupinus albus HOM05D005942 ORTHO05D007209 1.7e-220 770.0 722 56.2
RcHm_v2.0_Chr2g0147901 Rosa chinensis HOM05D005942 ORTHO05D007209 3.7e-220 768.8 734 56.0
FAN02G3526 Fragaria x ananassa HOM05D005942 ORTHO05D007209 2.7e-218 762.7 784 53.3
FAN14G4637 Fragaria x ananassa HOM05D005942 ORTHO05D007209 3.5e-218 762.3 764 54.2
Glyma.03G263200 Glycine max HOM05D005942 ORTHO05D007209 4.5e-218 761.9 755 55.0
Gohir.D05G144100 Gossypium hirsutum HOM05D005942 ORTHO05D007209 5.9e-218 761.5 716 56.6
Gorai.009G148000 Gossypium raimondii HOM05D005942 ORTHO05D007209 1.0e-217 760.8 720 56.4
Eucgr.J02595 Eucalyptus grandis HOM05D005942 ORTHO05D007209 4.2e-216 755.4 774 52.2
VMungo1309G0067 Vigna mungo HOM05D005942 ORTHO05D007209 5.5e-216 755.0 759 54.8
MD09G1172500 Malus domestica HOM05D005942 ORTHO05D007209 7.2e-216 754.6 730 55.6
COL.COLO4_30871 Corchorus olitorius HOM05D005942 ORTHO05D007209 1.2e-215 753.8 709 56.4
Gohir.A05G141800 Gossypium hirsutum HOM05D005942 ORTHO05D007209 1.6e-215 753.4 716 56.7
ECA234G0243 Erigeron canadensis HOM05D005942 ORTHO05D007209 2.7e-215 752.7 747 51.9
THA.LOC104813965 Tarenaya hassleriana HOM05D005942 ORTHO05D007209 1.2e-213 747.3 754 53.1
Thhalv10018182m.g Eutrema salsugineum HOM05D005942 ORTHO05D007209 7.5e-213 744.6 741 53.4
Duzib192G0321 Durio zibethinus HOM05D005942 ORTHO05D007209 4.9e-212 741.9 655 58.3
Lsat_1_v5_gn_5_137681 Lactuca sativa HOM05D005942 ORTHO05D007209 4.1e-211 738.8 751 52.2
Phvul.009G261600 Phaseolus vulgaris HOM05D005942 ORTHO05D007209 5.4e-211 738.4 727 54.5
Rhsim08G0245000 Rhododendron simsii HOM05D005942 ORTHO05D007209 1.7e-209 733.4 753 52.6
AL2G32000 Arabidopsis lyrata HOM05D005942 ORTHO05D007209 2.3e-209 733.0 759 52.2
PGSC0003DMG400009149 Solanum tuberosum HOM05D005942 ORTHO05D007209 2.9e-209 732.6 720 53.5
MSTRG.10908 Avicennia marina HOM05D005942 ORTHO05D007209 5.0e-209 731.9 766 52.9
Lj9C538T8 Lonicera japonica HOM05D005942 ORTHO05D007209 5.0e-209 731.9 787 51.6
Atru.chr1.4156 Acer truncatum HOM05D005942 ORTHO05D007209 6.6e-209 731.5 730 53.7
AT1G72320 Arabidopsis thaliana HOM05D005942 ORTHO05D007209 1.1e-208 730.7 759 52.0
Lj1g0014309 Lotus japonicus HOM05D005942 ORTHO05D007209 1.1e-208 730.7 682 56.2
Aqoxy7G00926 Aquilegia oxysepala HOM05D005942 ORTHO05D007209 2.1e-207 726.5 684 55.1
DCAR_007660 Daucus carota HOM05D005942 ORTHO05D007209 1.8e-206 723.4 709 53.9
Aa31LG4G2680 Aethionema arabicum HOM05D005942 ORTHO05D007209 2.3e-206 723.0 758 52.0
CAN.G790.55 Capsicum annuum HOM05D005942 ORTHO05D007209 6.8e-206 721.5 721 53.0
Medtr7g117545 Medicago truncatula HOM05D005942 ORTHO05D007209 2.9e-204 716.1 689 55.9
TPR.G28866 Trifolium pratense HOM05D005942 ORTHO05D007209 6.4e-204 714.9 781 52.0
CARHR065220 Cardamine hirsuta HOM05D005942 ORTHO05D007209 3.2e-203 712.6 756 50.8
Cc04_g00670 Coffea canephora HOM05D005942 ORTHO05D007209 1.6e-202 710.3 709 54.3
SalBow7G4809 Salvia bowleyana HOM05D005942 ORTHO05D007209 2.0e-202 709.9 770 50.8
Peaxi162Scf00038g02336 Petunia axillaris HOM05D005942 ORTHO05D007209 2.7e-202 709.5 720 51.9
Solyc03g123640.3 Solanum lycopersicum HOM05D005942 ORTHO05D007209 3.5e-202 709.1 723 53.0
Psat6g168240 Pisum sativum HOM05D005942 ORTHO05D007209 4.6e-202 708.8 722 54.7
Carub.0002s1918 Capsella rubella HOM05D005942 ORTHO05D007209 1.0e-201 707.6 735 52.0
Sp5g27400 Schrenkiella parvula HOM05D005942 ORTHO05D007209 2.5e-200 703.0 735 51.6
arahy.Tifrunner.gnm1.ann1.SXV5N5 Arachis hypogaea HOM05D005942 ORTHO05D007209 2.8e-199 699.5 647 56.3
Migut.I01134 Erythranthe guttata HOM05D005942 ORTHO05D007209 1.3e-196 690.6 751 50.2
Sopen03g041410 Solanum pennellii HOM05D005942 ORTHO05D007209 1.3e-196 690.6 687 53.6
Manes.04G151100 Manihot esculenta HOM05D005942 ORTHO05D007209 6.0e-194 681.8 761 51.1
SGA_v2.0_scaffold122G33306 Striga asiatica HOM05D005942 ORTHO05D007209 3.0e-193 679.5 725 50.3
BcaC08g46688 Brassica carinata HOM05D005942 ORTHO05D007209 6.6e-193 678.3 732 48.5
BolC6t39713H Brassica oleracea HOM05D005942 ORTHO05D007209 1.9e-192 676.8 734 48.5
C06p46680 Brassica napus HOM05D005942 ORTHO05D007209 4.3e-192 675.6 734 48.5
Nitab4.5_0006338g0060 Nicotiana tabacum HOM05D005942 ORTHO05D007209 7.3e-192 674.9 682 53.1
vmacro18719 Vaccinium macrocarpon HOM05D005942 ORTHO05D007209 9.5e-192 674.5 683 53.9
A07p38500 Brassica napus HOM05D005942 ORTHO05D007209 1.6e-191 673.7 733 48.8
Ca_07883_v3 Cicer arietinum L. HOM05D005942 ORTHO05D007209 2.8e-191 672.9 764 49.7
MBI13_g01657_MAGBIO Magnolia biondii HOM05D005942 ORTHO05D007209 8.9e-190 667.9 763 48.0
PSO017G1617 Papaver somniferum HOM05D005942 ORTHO05D007209 8.9e-190 667.9 778 48.5
AUR62025613 Chenopodium quinoa HOM05D005942 ORTHO05D007209 2.0e-189 666.8 760 49.2
BraA07t31410Z Brassica rapa HOM05D005942 ORTHO05D007209 4.4e-189 665.6 735 48.4
PSO170G5566 Papaver somniferum HOM05D005942 ORTHO05D007209 9.8e-189 664.5 768 48.8
BcaB03g14980 Brassica carinata HOM05D005942 ORTHO05D007209 1.3e-188 664.1 718 49.7
AUR62001402 Chenopodium quinoa HOM05D005942 ORTHO05D007209 8.3e-188 661.4 756 48.8
Oeu019509.2 Olea europaea HOM05D005942 ORTHO05D007209 1.6e-186 657.1 607 56.7
FAN05G1996 Fragaria x ananassa HOM05D005942 ORTHO05D007209 6.0e-186 655.2 618 55.7
HanXRQChr10g0311801 Helianthus annuus HOM05D005942 ORTHO05D007209 7.8e-186 654.8 728 48.2
EL10Ac7g16496 Beta vulgaris HOM05D005942 ORTHO05D007209 2.3e-185 653.3 686 52.9
Hund18636 Selenicereus undatus HOM05D005942 ORTHO05D007209 1.7e-177 627.1 702 49.9
Ah.15g094920 Amaranthus hybridus HOM05D005942 ORTHO05D007209 2.1e-175 620.2 727 49.0
CDE04G3550 Ceratophyllum demersum HOM05D005942 ORTHO05D007209 5.1e-169 599.0 735 46.5
ATR0099G013 Amborella trichopoda HOM05D005942 ORTHO05D007209 1.2e-165 587.8 682 47.9
Sc12g0011030 Simmondsia chinensis HOM05D005942 ORTHO05D007209 8.1e-159 565.1 632 50.0
Nitab4.5_0001873g0040 Nicotiana tabacum HOM05D005942 ORTHO05D007209 3.8e-156 556.2 682 47.4
HPP92_016652 Vanilla planifolia HOM05D005942 ORTHO05D007209 1.0e-148 531.6 679 44.9
Zm00001eb028000 Zea mays HOM05D005942 ORTHO05D007209 6.5e-148 528.9 689 42.5
Nitab4.5_0007678g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 2.3e-137 493.8 666 44.7
AUR62043501 Chenopodium quinoa HOM05D005942 ORTHO05D007209 1.3e-132 478.0 470 52.3
unitig_62.g23675 Utricularia gibba HOM05D005942 ORTHO05D007209 5.5e-123 446.0 747 39.1
Actinidia24424 Actinidia chinensis HOM05D005942 ORTHO05D007209 4.5e-117 426.4 401 56.1
arahy.Tifrunner.gnm1.ann1.UMP4HF Arachis hypogaea HOM05D005942 ORTHO05D007209 1.8e-113 414.5 392 55.9
Cpa.g.sc25.196 Carica papaya HOM05D005942 ORTHO05D007209 2.4e-102 377.5 326 59.8
Pp3c10_6430 Physcomitrium patens HOM05D005942 ORTHO05D007209 1.4e-94 351.7 582 35.6
AagrBONN_evm.TU.Sc2ySwM_369.233 Anthoceros agrestis HOM05D005942 ORTHO05D007209 5.9e-93 346.3 630 34.9
Mapoly0020s0016 Marchantia polymorpha HOM05D005942 ORTHO05D007209 7.7e-93 345.9 605 35.4
CAN.G635.25 Capsicum annuum HOM05D005942 ORTHO05D007209 5.2e-81 306.6 702 32.5
SMO118G0133 Selaginella moellendorffii HOM05D005942 ORTHO05D007209 2.9e-79 300.8 562 33.6
Nitab4.5_0001873g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 2.3e-76 291.2 672 33.0
HPP92_016646 Vanilla planifolia HOM05D005942 ORTHO05D007209 6.4e-71 273.1 398 42.2
Cpa.g.sc25.195 Carica papaya HOM05D005942 ORTHO05D007209 2.4e-70 271.2 259 55.6
MCO05G275 Micromonas commoda HOM05D005942 ORTHO05D007209 8.1e-58 229.6 581 29.9
HPP92_016647 Vanilla planifolia HOM05D005942 ORTHO05D007209 1.5e-48 198.7 284 42.3
Cre16.g649600 Chlamydomonas reinhardtii HOM05D005942 ORTHO05D007209 1.0e-44 186.0 640 25.2
Sabra01G0130200 Salix brachista HOM05D005942 ORTHO05D007209 6.9e-41 173.3 652 27.5
CBR_g4864 Chara braunii HOM05D005942 ORTHO05D007209 7.4e-35 153.3 677 22.6
SEGI_33476 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 2.0e-32 145.2 127 55.1
CAN.G635.26 Capsicum annuum HOM05D005942 ORTHO05D007209 3.2e-30 137.9 163 47.9
Actinidia21840 Actinidia chinensis HOM05D005942 ORTHO05D007209 2.1e-29 135.2 149 49.7
Glyma.19G262250 Glycine max HOM05D005942 ORTHO05D007209 2.4e-25 121.7 121 52.1
Actinidia21839 Actinidia chinensis HOM05D005942 ORTHO05D007209 3.1e-25 121.3 162 45.1
SEGI_14143 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 7.2e-22 110.2 148 43.2
Haze_02542 Corylus avellana HOM05D005942 ORTHO05D007209 7.9e-21 106.7 82 58.5
PRCOL_00005763 Prasinoderma coloniale HOM05D005942 ORTHO05D007209 1.8e-20 105.5 463 23.5
C02p29840 Brassica napus HOM05D005942 ORTHO05D007209 3.8e-15 87.8 74 60.8
BolC2t09032H Brassica oleracea HOM05D005942 ORTHO05D007209 1.1e-14 86.3 92 51.1
MBI15_g00935_MAGBIO Magnolia biondii HOM05D001716 ORTHO05D016670 1.4e-12 79.3 189 32.3
SGA_v2.0_scaffold253G45152 Striga asiatica HOM05D005942 ORTHO05D007209 2.6e-11 75.1 144 33.3
CBR_g19531 Chara braunii HOM05D005942 ORTHO05D007209 2.8e-10 71.6 259 28.2
AT1G22240 Arabidopsis thaliana HOM05D000867 ORTHO05D000864 6.9e-09 67.0 262 26.3
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 3.4e-08 64.7 48 54.2
AL1G35692 Arabidopsis lyrata HOM05D000867 ORTHO05D000864 4.5e-08 64.3 262 26.0
SEGI_28404 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 4.5e-08 64.3 65 47.7
CiPaw.05G036200 Carya illinoinensis HOM05D000867 ORTHO05D000864 5.9e-08 63.9 319 26.0
Carub.0001s2179 Capsella rubella HOM05D000867 ORTHO05D000864 1.0e-07 63.2 263 25.9
CARHR022590 Cardamine hirsuta HOM05D000867 ORTHO05D000864 1.0e-07 63.2 263 25.9
Haze_22934 Corylus avellana HOM05D000867 ORTHO05D000864 1.0e-07 63.2 346 24.6
A02p22070 Brassica napus HOM05D000867 ORTHO05D000864 1.3e-07 62.8 262 26.3
C02p35450 Brassica napus HOM05D000867 ORTHO05D000864 1.3e-07 62.8 262 26.3
BolC2t09558H Brassica oleracea HOM05D000867 ORTHO05D000864 1.3e-07 62.8 262 26.3
BraA02t07209Z Brassica rapa HOM05D000867 ORTHO05D000864 1.3e-07 62.8 262 26.3
Manes.02G153200 Manihot esculenta HOM05D000867 ORTHO05D000864 1.3e-07 62.8 261 25.7
vmacro04263 Vaccinium macrocarpon HOM05D000867 ORTHO05D000864 1.7e-07 62.4 261 25.3
vmacro23201 Vaccinium macrocarpon HOM05D000867 ORTHO05D000864 1.7e-07 62.4 261 25.3
Lj1A522T65 Lonicera japonica HOM05D000867 ORTHO05D000864 2.2e-07 62.0 280 24.6
Sp1g19750 Schrenkiella parvula HOM05D000867 ORTHO05D000864 2.2e-07 62.0 263 26.2
BcaB05g25123 Brassica carinata HOM05D000867 ORTHO05D000864 2.9e-07 61.6 262 26.0
Thhalv10009853m.g Eutrema salsugineum HOM05D000867 ORTHO05D000864 2.9e-07 61.6 262 26.0
THA.LOC104800154 Tarenaya hassleriana HOM05D000867 ORTHO05D000864 2.9e-07 61.6 276 22.8
THA.LOC104810822 Tarenaya hassleriana HOM05D000867 ORTHO05D000864 5.0e-07 60.8 262 24.8
BcaB03g15983 Brassica carinata HOM05D000867 ORTHO05D000864 6.5e-07 60.5 262 25.6
Thhalv10018339m.g Eutrema salsugineum HOM05D000867 ORTHO05D000864 8.5e-07 60.1 262 26.0
ECA248G3655 Erigeron canadensis HOM05D000867 ORTHO05D000864 1.1e-06 59.7 243 25.5
AL2G38470 Arabidopsis lyrata HOM05D000867 ORTHO05D000864 1.4e-06 59.3 262 25.2
Sp5g33280 Schrenkiella parvula HOM05D000867 ORTHO05D000864 1.4e-06 59.3 262 25.6
Aa31LG4G8200 Aethionema arabicum HOM05D000867 ORTHO05D000864 1.9e-06 58.9 263 24.7
Thhalv10001811m.g Eutrema salsugineum HOM05D000867 ORTHO05D000864 1.9e-06 58.9 318 23.6
Carub.0002s2505 Capsella rubella HOM05D000867 ORTHO05D000864 3.2e-06 58.2 262 25.6
CiPaw.06G152800 Carya illinoinensis HOM05D000867 ORTHO05D000864 3.2e-06 58.2 252 25.4
AT1G78160 Arabidopsis thaliana HOM05D000867 ORTHO05D000864 5.5e-06 57.4 262 24.8
A07p43450 Brassica napus HOM05D000867 ORTHO05D000864 5.5e-06 57.4 262 25.2
C06p52110 Brassica napus HOM05D000867 ORTHO05D000864 5.5e-06 57.4 262 25.2
BolC6t40234H Brassica oleracea HOM05D000867 ORTHO05D000864 5.5e-06 57.4 262 25.2
BraA07t31859Z Brassica rapa HOM05D000867 ORTHO05D000864 5.5e-06 57.4 262 25.2
BcaC08g47390 Brassica carinata HOM05D000867 ORTHO05D000864 9.4e-06 56.6 262 25.2
Lsat_1_v5_gn_1_68720 Lactuca sativa HOM05D000867 ORTHO05D000864 9.4e-06 56.6 257 25.3


User provided reference genes

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