Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C018187.2 Cucumis melo HOM05D005363 ORTHO05D006607 0.0e+00 1243.0 694 100.0
CsaV3_3G044350 Cucumis sativus L. HOM05D005363 ORTHO05D006607 9.5e-311 1069.7 702 84.3
ClCG11G018480 Citrullus lanatus HOM05D005363 ORTHO05D006607 1.4e-298 1029.2 703 80.8
Sed0012869 Sechium edule HOM05D005363 ORTHO05D006607 2.1e-278 962.2 702 76.9
CiPaw.11G177000 Carya illinoinensis HOM05D005363 ORTHO05D006607 6.2e-270 934.1 728 70.1
Thecc.07G070700 Theobroma cacao HOM05D005363 ORTHO05D006607 9.6e-263 910.2 729 69.5
QL08p017669 Quercus lobata HOM05D005363 ORTHO05D006607 4.9e-259 897.9 782 65.6
TAR629G3355 Trochodendron aralioides HOM05D005363 ORTHO05D006607 4.9e-259 897.9 727 67.5
Manes.15G082900 Manihot esculenta HOM05D005363 ORTHO05D006607 1.9e-258 896.0 731 66.3
Ciclev10007579m.g Citrus clementina HOM05D005363 ORTHO05D006607 2.4e-258 895.6 734 69.6
Actinidia35283 Actinidia chinensis HOM05D005363 ORTHO05D006607 7.1e-258 894.0 729 69.0
MD11G1235900 Malus domestica HOM05D005363 ORTHO05D006607 1.6e-257 892.9 727 72.2
CANSAT11G0579 Cannabis sativa HOM05D005363 ORTHO05D006607 4.6e-257 891.3 730 68.6
COL.COLO4_09485 Corchorus olitorius HOM05D005363 ORTHO05D006607 1.0e-256 890.2 721 68.8
CSS0003917 Camellia sinensis var. sinensis HOM05D005363 ORTHO05D006607 3.9e-256 888.3 717 69.6
Cpa.g.sc12.44 Carica papaya HOM05D005363 ORTHO05D006607 3.9e-256 888.3 735 67.3
Prupe.4G191100 Prunus persica HOM05D005363 ORTHO05D006607 8.7e-256 887.1 725 68.4
Duzib170G0704 Durio zibethinus HOM05D005363 ORTHO05D006607 1.9e-255 885.9 722 69.1
MSTRG.5819 Avicennia marina HOM05D005363 ORTHO05D006607 4.8e-254 881.3 737 65.5
MD03G1218100 Malus domestica HOM05D005363 ORTHO05D006607 1.1e-253 880.2 724 71.7
Glyma.12G219100 Glycine max HOM05D005363 ORTHO05D006607 1.8e-253 879.4 714 68.8
RcHm_v2.0_Chr5g0036071 Rosa chinensis HOM05D005363 ORTHO05D006607 4.0e-253 878.2 724 68.0
Lj3g0015043 Lotus japonicus HOM05D005363 ORTHO05D006607 3.4e-252 875.2 717 71.8
Potri.001G407300 Populus trichocarpa HOM05D005363 ORTHO05D006607 5.8e-252 874.4 733 68.2
Sc03g0009580 Simmondsia chinensis HOM05D005363 ORTHO05D006607 3.2e-250 868.6 721 67.4
Dinv08347 Davidia involucrata HOM05D005363 ORTHO05D006607 7.1e-250 867.5 746 66.4
Psat2g184560 Pisum sativum HOM05D005363 ORTHO05D006607 1.2e-249 866.7 711 69.8
GSVIVG01014441001 Vitis vinifera HOM05D005363 ORTHO05D006607 1.8e-248 862.8 732 67.8
Oeu009902.1 Olea europaea HOM05D005363 ORTHO05D006607 8.7e-248 860.5 734 66.8
PGR083G1158 Punica granatum HOM05D005363 ORTHO05D006607 1.9e-247 859.4 732 67.2
Aa31LG3G10220 Aethionema arabicum HOM05D005363 ORTHO05D006607 2.5e-247 859.0 711 66.5
Phvul.005G085700 Phaseolus vulgaris HOM05D005363 ORTHO05D006607 2.5e-247 859.0 711 67.7
Medtr2g081100 Medicago truncatula HOM05D005363 ORTHO05D006607 5.6e-247 857.8 698 68.8
arahy.Tifrunner.gnm1.ann1.42XSYF Arachis hypogaea HOM05D005363 ORTHO05D006607 1.6e-246 856.3 712 67.7
Lalb_Chr25g0286791 Lupinus albus HOM05D005363 ORTHO05D006607 3.1e-245 852.0 715 66.6
Migut.J00972 Erythranthe guttata HOM05D005363 ORTHO05D006607 1.7e-243 846.3 727 66.4
arahy.Tifrunner.gnm1.ann1.3P80NP Arachis hypogaea HOM05D005363 ORTHO05D006607 6.5e-243 844.3 713 66.9
FAN21G3123 Fragaria x ananassa HOM05D005363 ORTHO05D006607 1.4e-242 843.2 739 64.1
Gorai.009G430700 Gossypium raimondii HOM05D005363 ORTHO05D006607 1.6e-241 839.7 726 66.0
Hma1.2p1_1176F.1_g264200 Hydrangea macrophylla HOM05D005363 ORTHO05D006607 2.1e-241 839.3 772 61.9
Nn1g03887 Nelumbo nucifera HOM05D005363 ORTHO05D006607 7.9e-241 837.4 722 66.1
Haze_09533 Corylus avellana HOM05D005363 ORTHO05D006607 2.3e-240 835.9 801 61.8
Sabra16G0268700 Salix brachista HOM05D005363 ORTHO05D006607 5.1e-240 834.7 717 66.1
CARHR267540 Cardamine hirsuta HOM05D005363 ORTHO05D006607 8.7e-240 833.9 715 65.9
ECA240G2604 Erigeron canadensis HOM05D005363 ORTHO05D006607 1.5e-239 833.2 727 64.6
FAN11G3021 Fragaria x ananassa HOM05D005363 ORTHO05D006607 2.5e-239 832.4 724 67.8
Gohir.D05G362100 Gossypium hirsutum HOM05D005363 ORTHO05D006607 2.5e-239 832.4 726 65.6
SGA_v2.0_scaffold13G06767 Striga asiatica HOM05D005363 ORTHO05D006607 5.7e-239 831.2 741 63.8
FvH4_3g21040 Fragaria vesca HOM05D005363 ORTHO05D006607 7.4e-239 830.9 724 67.8
Lsat_1_v5_gn_9_95600 Lactuca sativa HOM05D005363 ORTHO05D006607 1.3e-238 830.1 718 65.9
HanXRQChr03g0077211 Helianthus annuus HOM05D005363 ORTHO05D006607 3.7e-238 828.6 725 63.0
Sp6g16300 Schrenkiella parvula HOM05D005363 ORTHO05D006607 6.3e-238 827.8 715 65.2
FAN25G3415 Fragaria x ananassa HOM05D005363 ORTHO05D006607 4.1e-237 825.1 728 67.6
Thhalv10012804m.g Eutrema salsugineum HOM05D005363 ORTHO05D006607 5.3e-237 824.7 716 65.5
AT5G54260 Arabidopsis thaliana HOM05D005363 ORTHO05D006607 6.9e-237 824.3 720 65.6
Carub.0008s1460 Capsella rubella HOM05D005363 ORTHO05D006607 9.0e-237 823.9 603 74.0
vmacro09564 Vaccinium macrocarpon HOM05D005363 ORTHO05D006607 1.5e-236 823.2 682 67.6
PSO832G2870 Papaver somniferum HOM05D005363 ORTHO05D006607 7.6e-236 820.8 737 63.9
PSO210G7030 Papaver somniferum HOM05D005363 ORTHO05D006607 1.0e-235 820.5 737 65.4
SalBow3G2312 Salvia bowleyana HOM05D005363 ORTHO05D006607 1.3e-235 820.1 753 62.7
EL10Ac4g08052 Beta vulgaris HOM05D005363 ORTHO05D006607 3.8e-235 818.5 762 61.3
Aqoxy1G03881 Aquilegia oxysepala HOM05D005363 ORTHO05D006607 5.0e-235 818.1 725 64.6
THA.LOC104813315 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 3.2e-234 815.5 505 81.2
Sabra16G0270900 Salix brachista HOM05D005363 ORTHO05D006607 1.6e-233 813.1 655 69.9
Cc06_g05460 Coffea canephora HOM05D005363 ORTHO05D006607 4.6e-233 811.6 507 80.3
BcaB08g35781 Brassica carinata HOM05D005363 ORTHO05D006607 6.1e-233 811.2 715 65.5
HPP92_026561 Vanilla planifolia HOM05D005363 ORTHO05D006607 6.1e-233 811.2 688 64.0
TPR.G32857 Trifolium pratense HOM05D005363 ORTHO05D006607 2.3e-232 809.3 708 65.7
AL8G29590 Arabidopsis lyrata HOM05D005363 ORTHO05D006607 3.9e-232 808.5 698 66.5
BcaC04g20356 Brassica carinata HOM05D005363 ORTHO05D006607 1.1e-231 807.0 715 64.6
Hund02186 Selenicereus undatus HOM05D005363 ORTHO05D006607 7.4e-231 804.3 701 64.3
HPP92_026534 Vanilla planifolia HOM05D005363 ORTHO05D006607 2.8e-230 802.4 716 61.9
RhsimUnG0258300 Rhododendron simsii HOM05D005363 ORTHO05D006607 8.2e-230 800.8 642 66.5
Gohir.D01G056400 Gossypium hirsutum HOM05D005363 ORTHO05D006607 1.1e-229 800.4 709 65.4
BolC9t57330H Brassica oleracea HOM05D005363 ORTHO05D006607 3.1e-229 798.9 724 63.8
ATR0693G020 Amborella trichopoda HOM05D005363 ORTHO05D006607 6.9e-229 797.7 723 61.7
BraA10t43250Z Brassica rapa HOM05D005363 ORTHO05D006607 9.1e-229 797.3 724 63.5
C09p44570 Brassica napus HOM05D005363 ORTHO05D006607 5.9e-228 794.7 646 68.9
A10p11550 Brassica napus HOM05D005363 ORTHO05D006607 6.5e-227 791.2 648 68.4
Sopen09g004090 Solanum pennellii HOM05D005363 ORTHO05D006607 6.5e-227 791.2 518 77.2
MBI15_g19746_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 2.2e-222 776.2 655 67.0
SHI33827 Sapria himalayana HOM05D005363 ORTHO05D006607 3.7e-222 775.4 717 60.5
unitig_8.g4146 Utricularia gibba HOM05D005363 ORTHO05D006607 7.7e-220 767.7 716 60.3
Zm00001eb069270 Zea mays HOM05D005363 ORTHO05D006607 5.0e-219 765.0 715 60.8
Gorai.002G076500 Gossypium raimondii HOM05D005363 ORTHO05D006607 6.5e-219 764.6 729 62.0
Lj8C160T16 Lonicera japonica HOM05D005363 ORTHO05D006607 1.9e-218 763.1 714 62.9
Os04g0635900 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 1.0e-216 757.3 715 59.2
CAN.G824.3 Capsicum annuum HOM05D005363 ORTHO05D006607 5.2e-216 755.0 670 64.2
DCAR_018424 Daucus carota HOM05D005363 ORTHO05D006607 6.7e-216 754.6 638 67.9
VMungo1080G1535 Vigna mungo HOM05D005363 ORTHO05D006607 4.4e-215 751.9 469 79.7
AUR62029306 Chenopodium quinoa HOM05D005363 ORTHO05D006607 1.8e-205 719.9 775 54.2
Peaxi162Scf00290g00111 Petunia axillaris HOM05D005363 ORTHO05D006607 7.0e-205 718.0 621 66.0
Gohir.A04G025700 Gossypium hirsutum HOM05D005363 ORTHO05D006607 2.5e-202 709.5 727 58.9
AUR62015595 Chenopodium quinoa HOM05D005363 ORTHO05D006607 7.5e-199 698.0 517 69.8
Pp3c24_2350 Physcomitrium patens HOM05D005363 ORTHO05D006607 5.6e-186 655.2 487 66.5
Mapoly0023s0117 Marchantia polymorpha HOM05D005363 ORTHO05D006607 8.0e-185 651.4 739 52.2
FAN16G0276 Fragaria x ananassa HOM05D005363 ORTHO05D006607 1.8e-184 650.2 738 58.0
AagrBONN_evm.TU.Sc2ySwM_117.2240 Anthoceros agrestis HOM05D005363 ORTHO05D006607 4.9e-182 642.1 720 53.5
Gohir.A04G026000 Gossypium hirsutum HOM05D005363 ORTHO05D006607 1.2e-180 637.5 621 61.0
SMO347G0170 Selaginella moellendorffii HOM05D005363 ORTHO05D006607 3.5e-172 609.4 500 61.2
CDE12G0672 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 1.1e-168 597.8 406 74.1
Nitab4.5_0001969g0080 Nicotiana tabacum HOM05D005363 ORTHO05D006607 3.5e-164 582.8 637 56.5
Atru.chr2.2913 Acer truncatum HOM05D005363 ORTHO05D006607 5.4e-157 558.9 344 79.4
CBR_g48040 Chara braunii HOM05D005363 ORTHO05D006607 2.6e-151 540.0 549 51.5
Os08g0177600 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 6.4e-150 535.4 475 56.6
Zm00001eb171920 Zea mays HOM05D005363 ORTHO05D006607 1.1e-146 524.6 470 56.8
Ca_01813_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 2.5e-138 496.9 361 70.4
unitig_13.g31430 Utricularia gibba HOM05D005363 ORTHO05D006607 1.1e-130 471.5 446 60.3
Eucgr.F01076 Eucalyptus grandis HOM05D005363 ORTHO05D006607 5.7e-122 442.6 550 54.2
Cre12.g556911 Chlamydomonas reinhardtii HOM05D005363 ORTHO05D006607 7.7e-111 405.6 500 44.0
Nitab4.5_0007366g0050 Nicotiana tabacum HOM05D005363 ORTHO05D006607 1.9e-109 401.0 446 56.7
MCO13G379 Micromonas commoda HOM05D005363 ORTHO05D006607 3.6e-100 370.2 531 41.4
Nitab4.5_0007366g0060 Nicotiana tabacum HOM05D005363 ORTHO05D006607 8.2e-97 359.0 207 84.1
PRCOL_00003292 Prasinoderma coloniale HOM05D005363 ORTHO05D006607 5.5e-93 346.3 536 39.9
SEGI_22122 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 3.7e-89 333.6 257 64.6
PGSC0003DMG400002669 Solanum tuberosum HOM05D005363 ORTHO05D006607 5.3e-88 329.7 173 90.2
Cfa025591 Carpinus fangiana HOM05D005363 ORTHO05D006607 5.2e-83 313.2 510 36.9
Atru.chr2.2912 Acer truncatum HOM05D005363 ORTHO05D006607 1.0e-78 298.9 377 53.6
CAN.G397.4 Capsicum annuum HOM05D005363 ORTHO05D006607 8.6e-62 242.7 263 54.0
Eucgr.C01186 Eucalyptus grandis HOM05D005363 ORTHO05D006607 1.3e-54 218.8 357 49.0
CDE12G0057 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 3.6e-52 210.7 160 65.6
CDE12G0487 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 5.1e-46 190.3 300 44.3
SEGI_32923 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 6.8e-43 179.9 97 86.6
MBI09_g27609_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 1.4e-40 172.2 157 57.3
Ca_01800_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 1.9e-32 145.2 243 50.6
Ca_30473_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 7.1e-32 143.3 242 50.4
GSVIVG01001519001 Vitis vinifera HOM05D005363 ORTHO05D006607 7.3e-29 133.3 85 81.2
SEGI_35588 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 1.6e-28 132.1 295 39.0
CDE12G0011 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 1.3e-22 112.5 76 77.6
Cc06_g05450 Coffea canephora HOM05D005363 ORTHO05D006607 1.9e-13 82.0 135 49.6
arahy.Tifrunner.gnm1.ann1.Q8WXS4 Arachis hypogaea HOM05D005363 ORTHO05D006607 7.4e-13 80.1 97 49.5
THA.LOC104811844 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 6.5e-09 67.0 137 43.1


User provided reference genes

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