Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C018182.2 Cucumis melo HOM05D004364 ORTHO05D006299 0.0e+00 1646.7 808 100.0
CsaV3_3G044300 Cucumis sativus L. HOM05D004364 ORTHO05D006299 0.0e+00 1615.9 808 97.6
ClCG11G018570 Citrullus lanatus HOM05D004364 ORTHO05D006299 0.0e+00 1566.6 885 87.9
Sed0018829 Sechium edule HOM05D004364 ORTHO05D006299 0.0e+00 1556.2 807 93.7
MD11G1234900 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1386.3 809 83.1
Prupe.4G192200 Prunus persica HOM05D004364 ORTHO05D006299 0.0e+00 1382.9 809 82.4
GSVIVG01014465001 Vitis vinifera HOM05D004364 ORTHO05D006299 0.0e+00 1378.6 813 82.0
FvH4_3g21160 Fragaria vesca HOM05D004364 ORTHO05D006299 0.0e+00 1374.4 810 81.9
RcHm_v2.0_Chr5g0036241 Rosa chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1373.6 809 81.8
Manes.03G117700 Manihot esculenta HOM05D004364 ORTHO05D006299 0.0e+00 1366.3 808 81.7
CANSAT11G0334 Cannabis sativa HOM05D004364 ORTHO05D006299 0.0e+00 1365.1 808 81.6
FAN11G0387 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1365.1 814 81.3
Cfa020489 Carpinus fangiana HOM05D004364 ORTHO05D006299 0.0e+00 1364.7 811 81.5
MD03G1217200 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1364.0 809 82.3
FAN25G2975 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1361.7 814 81.4
TWI39G0400 Tripterygium wilfordii HOM05D004364 ORTHO05D006299 0.0e+00 1360.5 812 81.3
FAN16G3737 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1358.6 814 81.2
Atru.chr2.2938 Acer truncatum HOM05D004364 ORTHO05D006299 0.0e+00 1353.6 810 80.9
Gohir.A08G020600 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1352.4 811 81.4
CiPaw.11G178500 Carya illinoinensis HOM05D004364 ORTHO05D006299 0.0e+00 1351.7 813 80.9
Ciclev10007478m.g Citrus clementina HOM05D004364 ORTHO05D006299 0.0e+00 1351.7 810 80.2
Gorai.004G028800 Gossypium raimondii HOM05D004364 ORTHO05D006299 0.0e+00 1350.9 811 81.4
Gohir.D08G031200 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1350.1 811 81.1
Potri.011G125800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1350.1 806 80.8
Potri.001G408800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1349.3 808 80.9
TPR.G32881 Trifolium pratense HOM05D004364 ORTHO05D006299 0.0e+00 1347.8 807 80.5
Glyma.12G146600 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1344.3 806 80.0
Duzib170G0088 Durio zibethinus HOM05D004364 ORTHO05D006299 0.0e+00 1341.3 813 80.8
arahy.Tifrunner.gnm1.ann1.19RIMK Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1340.1 807 79.6
PGR083G1074 Punica granatum HOM05D004364 ORTHO05D006299 0.0e+00 1337.8 814 79.6
Lalb_Chr06g0175311 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1336.6 807 79.6
Thecc.07G069000 Theobroma cacao HOM05D004364 ORTHO05D006299 0.0e+00 1336.2 808 80.4
Cpa.g.sc12.20 Carica papaya HOM05D004364 ORTHO05D006299 0.0e+00 1335.9 815 79.1
Phvul.011G156100 Phaseolus vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1334.7 809 79.0
Ca_01795_v3 Cicer arietinum L. HOM05D004364 ORTHO05D006299 0.0e+00 1334.3 806 79.2
Lj3g0027191 Lotus japonicus HOM05D004364 ORTHO05D006299 0.0e+00 1333.9 811 77.9
Medtr2g081180 Medicago truncatula HOM05D004364 ORTHO05D006299 0.0e+00 1333.9 807 79.1
TAR626G1658 Trochodendron aralioides HOM05D004364 ORTHO05D006299 0.0e+00 1333.2 811 78.5
arahy.Tifrunner.gnm1.ann1.B7TU6S Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1332.8 807 79.3
Lalb_Chr02g0159341 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1330.9 809 79.4
Sabra11G0111700 Salix brachista HOM05D004364 ORTHO05D006299 0.0e+00 1330.9 817 79.1
Eucgr.F01066 Eucalyptus grandis HOM05D004364 ORTHO05D006299 0.0e+00 1329.3 815 80.1
Psat5g247520 Pisum sativum HOM05D004364 ORTHO05D006299 0.0e+00 1329.3 812 78.8
Nn1g06827 Nelumbo nucifera HOM05D004364 ORTHO05D006299 0.0e+00 1322.8 814 78.1
Glyma.06G255000 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1319.7 808 78.2
CSS0001646 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1315.1 811 78.4
PSO832G2674 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1308.9 808 78.0
PSO210G4872 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1306.6 808 77.6
FAN21G1304 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1301.6 810 78.4
Hma1.2p1_0015F.1_g010280 Hydrangea macrophylla HOM05D004364 ORTHO05D006299 0.0e+00 1301.6 811 77.7
HanXRQChr13g0407291 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1298.9 809 78.0
THA.LOC104816919 Tarenaya hassleriana HOM05D004364 ORTHO05D006299 0.0e+00 1290.8 823 75.8
Aqoxy1G03944 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1288.5 810 77.2
Haze_09550 Corylus avellana HOM05D004364 ORTHO05D006299 0.0e+00 1285.0 830 76.9
HanXRQChr03g0076071 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1279.6 808 77.0
Sp3g18670 Schrenkiella parvula HOM05D004364 ORTHO05D006299 0.0e+00 1277.7 806 76.4
ECA240G1374 Erigeron canadensis HOM05D004364 ORTHO05D006299 0.0e+00 1276.9 798 76.8
Thhalv10020069m.g Eutrema salsugineum HOM05D004364 ORTHO05D006299 0.0e+00 1273.8 806 76.7
Sc16g0006700 Simmondsia chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1271.5 811 76.1
AT3G20630 Arabidopsis thaliana HOM05D004364 ORTHO05D006299 0.0e+00 1269.6 806 75.8
A05p28190 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1267.3 808 75.5
AL3G34510 Arabidopsis lyrata HOM05D004364 ORTHO05D006299 0.0e+00 1266.5 806 75.7
C05p43630 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1265.0 805 75.8
BcaC01g03545 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1263.1 806 75.8
C03p51230 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1263.1 806 75.8
BraA05t21700Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1263.1 809 75.2
Oeu060533.1 Olea europaea HOM05D004364 ORTHO05D006299 0.0e+00 1262.3 811 75.8
MSTRG.12935 Avicennia marina HOM05D004364 ORTHO05D006299 0.0e+00 1261.9 807 74.8
A03p41850 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1260.0 805 75.7
BolC3t17413H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1259.6 807 75.7
BcaB04g19118 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1258.8 805 75.3
CARHR096430 Cardamine hirsuta HOM05D004364 ORTHO05D006299 0.0e+00 1258.4 805 75.3
Cc05_g12790 Coffea canephora HOM05D004364 ORTHO05D006299 0.0e+00 1258.4 810 75.7
BolC5t33082H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1258.0 806 75.4
BraA03t13338Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1256.5 806 75.6
Migut.H01895 Erythranthe guttata HOM05D004364 ORTHO05D006299 0.0e+00 1254.2 807 74.5
Lj8C162G4 Lonicera japonica HOM05D004364 ORTHO05D006299 0.0e+00 1253.0 787 77.3
Solyc07g063650.4 Solanum lycopersicum HOM05D004364 ORTHO05D006299 0.0e+00 1253.0 809 75.6
BcaB06g26128 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1250.3 805 74.8
BcaC05g28303 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1248.8 807 75.3
Sopen07g031830 Solanum pennellii HOM05D004364 ORTHO05D006299 0.0e+00 1248.0 809 75.4
CAN.G162.111 Capsicum annuum HOM05D004364 ORTHO05D006299 0.0e+00 1242.6 809 74.3
AUR62041167 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1240.7 819 73.5
AUR62029293 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1238.4 811 73.9
DCAR_008692 Daucus carota HOM05D004364 ORTHO05D006299 0.0e+00 1238.0 803 74.6
Aa31LG8G7430 Aethionema arabicum HOM05D004364 ORTHO05D006299 0.0e+00 1236.1 864 70.4
Nitab4.5_0001386g0060 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1228.4 809 73.2
Aqoxy5G02435 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1223.0 814 73.6
EL10Ac4g08041 Beta vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1221.8 813 73.2
SalBow7G1127 Salvia bowleyana HOM05D004364 ORTHO05D006299 0.0e+00 1218.4 868 69.0
Ah.04g165340 Amaranthus hybridus HOM05D004364 ORTHO05D006299 0.0e+00 1217.6 811 73.1
COL.COLO4_09498 Corchorus olitorius HOM05D004364 ORTHO05D006299 0.0e+00 1210.7 808 74.9
ATR1132G023 Amborella trichopoda HOM05D004364 ORTHO05D006299 0.0e+00 1201.8 860 67.9
Peaxi162Scf01216g00070 Petunia axillaris HOM05D004364 ORTHO05D006299 0.0e+00 1197.6 810 73.1
Hund02178 Selenicereus undatus HOM05D004364 ORTHO05D006299 0.0e+00 1196.4 810 72.5
HPP92_005995 Vanilla planifolia HOM05D004364 ORTHO05D006299 0.0e+00 1194.1 810 71.2
CDE01G0428 Ceratophyllum demersum HOM05D004364 ORTHO05D006299 0.0e+00 1192.6 824 71.8
CSS0013066 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1185.2 811 72.5
SGA_v2.0_scaffold9G04963 Striga asiatica HOM05D004364 ORTHO05D006299 0.0e+00 1181.4 807 71.4
SEGI_22005 Sequoiadendron giganteum HOM05D004364 ORTHO05D006299 0.0e+00 1181.0 807 70.0
Os01g0177200 Oryza sativa ssp. japonica HOM05D004364 ORTHO05D006299 0.0e+00 1177.2 812 69.8
Zm00001eb336890 Zea mays HOM05D004364 ORTHO05D006299 0.0e+00 1174.5 814 70.3
Carub.0003s2061 Capsella rubella HOM05D004364 ORTHO05D006299 0.0e+00 1173.7 764 75.0
vmacro09573 Vaccinium macrocarpon HOM05D004364 ORTHO05D006299 0.0e+00 1171.8 914 65.4
QL08p017220 Quercus lobata HOM05D004364 ORTHO05D006299 0.0e+00 1157.1 965 63.3
Lsat_1_v5_gn_0_5341 Lactuca sativa HOM05D004364 ORTHO05D006299 0.0e+00 1151.3 784 71.8
RhsimUnG0257500 Rhododendron simsii HOM05D004364 ORTHO05D006299 0.0e+00 1146.7 965 62.5
Nitab4.5_0000092g0270 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1134.4 809 69.1
Mapoly0028s0083 Marchantia polymorpha HOM05D004364 ORTHO05D006299 0.0e+00 1105.5 814 66.0
Pp3c19_17130 Physcomitrium patens HOM05D004364 ORTHO05D006299 0.0e+00 1091.6 819 64.5
Nitab4.5_0000297g0190 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1081.6 810 68.0
Manes.15G081800 Manihot esculenta HOM05D004364 ORTHO05D006299 0.0e+00 1077.8 812 68.3
Dinv22351 Davidia involucrata HOM05D004364 ORTHO05D006299 3.1e-289 998.4 606 79.2
SMO347G0465 Selaginella moellendorffii HOM05D004364 ORTHO05D006299 5.9e-288 994.2 803 61.6
unitig_21.g20140 Utricularia gibba HOM05D004364 ORTHO05D006299 9.4e-278 960.3 807 60.1
TAR624G0100 Trochodendron aralioides HOM05D004364 ORTHO05D006299 5.0e-247 858.2 786 58.5
VMungo1127G0244 Vigna mungo HOM05D004364 ORTHO05D006299 9.0e-196 688.0 379 85.5
PRCOL_00003961 Prasinoderma coloniale HOM05D004364 ORTHO05D006299 4.3e-190 669.1 860 44.0
Haze_26164 Corylus avellana HOM05D004364 ORTHO05D006299 1.3e-178 630.9 830 43.4
Nitab4.5_0001252g0070 Nicotiana tabacum HOM05D004364 ORTHO05D006299 7.2e-161 572.0 810 43.3
Cre02.g080350 Chlamydomonas reinhardtii HOM05D004364 ORTHO05D006299 2.9e-154 550.1 935 36.3
MCO15G328 Micromonas commoda HOM05D004364 ORTHO05D006299 1.4e-148 531.2 849 38.5
SHI10080 Sapria himalayana HOM05D004364 ORTHO05D006299 7.3e-121 439.1 316 67.1
CBR_g17932 Chara braunii HOM05D004364 ORTHO05D006299 2.1e-120 437.6 372 59.4
TAR624G1198 Trochodendron aralioides HOM05D004364 ORTHO05D006299 8.9e-111 405.6 244 75.8
Lj1g0005584 Lotus japonicus HOM05D004364 ORTHO05D006299 1.1e-108 398.7 359 60.7
arahy.Tifrunner.gnm1.ann1.CZGD0C Arachis hypogaea HOM05D004364 ORTHO05D006299 1.1e-84 318.9 240 67.9
Sed0014921 Sechium edule HOM05D004364 ORTHO05D006299 5.1e-82 310.1 671 35.0
Peaxi162Scf00177g00118 Petunia axillaris HOM05D004364 ORTHO05D006299 2.3e-74 284.6 201 70.6
Actinidia35287 Actinidia chinensis HOM05D004364 ORTHO05D006299 3.9e-66 257.3 175 73.1
GSVIVG01015715001 Vitis vinifera HOM05D004364 ORTHO05D019261 7.7e-46 189.9 141 70.9
TPR.G1046 Trifolium pratense HOM05D004364 ORTHO05D019261 1.2e-41 176.0 194 55.2
GSVIVG01014461001 Vitis vinifera HOM05D004364 ORTHO05D006299 1.7e-40 172.2 105 75.2
Rhsim03G0198500 Rhododendron simsii HOM05D004364 ORTHO05D006299 1.6e-38 165.6 90 81.1
Lj1g0002875 Lotus japonicus HOM05D004364 ORTHO05D236196 1.7e-37 162.2 270 42.6
SEGI_32785 Sequoiadendron giganteum HOM05D004364 ORTHO05D014012 1.5e-36 159.1 105 67.6
DCAR_027147 Daucus carota HOM05D004364 ORTHO05D006299 4.0e-34 151.0 106 69.8
MD15G1178100 Malus domestica HOM05D004364 ORTHO05D246722 7.0e-31 140.2 181 46.4
GSVIVG01015714001 Vitis vinifera HOM05D004364 ORTHO05D019261 1.3e-29 136.0 98 69.4
Medtr8g464880 Medicago truncatula HOM05D004364 ORTHO05D019261 9.5e-28 129.8 123 59.3
Pp3c21_16740 Physcomitrium patens HOM05D004364 ORTHO05D006299 4.7e-27 127.5 190 41.6
SEGI_31233 Sequoiadendron giganteum HOM05D004364 ORTHO05D019261 1.4e-26 125.9 118 56.8
GSVIVG01014462001 Vitis vinifera HOM05D004364 ORTHO05D019261 4.0e-26 124.4 80 77.5
CBR_g76006 Chara braunii HOM05D004364 ORTHO05D006299 8.8e-26 123.2 114 50.9
Lj8A161G44 Lonicera japonica HOM05D004364 ORTHO05D006299 7.5e-25 120.2 179 40.8
Medtr4g077475 Medicago truncatula HOM05D004364 ORTHO05D006299 2.9e-21 108.2 263 28.9
Sabra16G0271600 Salix brachista HOM05D004364 ORTHO05D006299 5.0e-21 107.5 69 75.4
SHI10079 Sapria himalayana HOM05D004364 ORTHO05D006299 6.6e-21 107.1 109 55.0
Nn8g40041 Nelumbo nucifera HOM05D004364 ORTHO05D006299 2.6e-17 95.1 50 82.0
TAR624G0891 Trochodendron aralioides HOM05D000008 ORTHO05D000005 2.6e-17 95.1 75 60.0
GSVIVG01015716001 Vitis vinifera HOM05D004364 ORTHO05D439286 2.6e-17 95.1 59 78.0
GSVIVG01014463001 Vitis vinifera HOM05D004364 ORTHO05D441130 4.4e-17 94.4 68 67.6
Nn6g32117 Nelumbo nucifera HOM05D004364 ORTHO05D006299 6.4e-16 90.5 43 90.7
TAR011G0002 Trochodendron aralioides HOM05D004364 ORTHO05D019261 8.3e-16 90.1 137 43.8
Nn6g32116 Nelumbo nucifera HOM05D004364 ORTHO05D014012 3.9e-13 81.3 57 70.2
MD15G1178000 Malus domestica HOM05D004364 ORTHO05D006299 1.6e-11 75.9 61 52.5
Sed0011564 Sechium edule HOM05D000344 ORTHO05D003478 1.1e-10 73.2 430 22.3
Lj1g0025632 Lotus japonicus HOM05D004364 ORTHO05D006299 2.3e-10 72.0 129 37.2
CsaV3_4G036430 Cucumis sativus L. HOM05D000344 ORTHO05D003478 2.2e-08 65.5 435 21.4
Gohir.D05G357560 Gossypium hirsutum HOM05D004364 ORTHO05D017991 3.7e-08 64.7 57 61.4
MCO15G019 Micromonas commoda HOM05D002714 ORTHO05D020415 3.7e-08 64.7 528 19.9
Lj8A161T45 Lonicera japonica HOM05D004364 ORTHO05D019261 4.9e-08 64.3 80 53.8
Gohir.D10G199250 Gossypium hirsutum HOM05D004364 ORTHO05D017991 6.4e-08 63.9 57 61.4
Gohir.D11G177550 Gossypium hirsutum HOM05D004364 ORTHO05D017991 6.4e-08 63.9 57 61.4
Nn8g40042 Nelumbo nucifera HOM05D004364 ORTHO05D006299 8.3e-08 63.5 34 85.3
PGR044G0522 Punica granatum HOM05D000344 ORTHO05D003478 1.9e-07 62.4 467 22.7
Gorai.002G149500 Gossypium raimondii HOM05D003868 ORTHO05D017991 2.4e-07 62.0 57 57.9
GSVIVG01035988001 Vitis vinifera HOM05D000344 ORTHO05D003478 2.4e-07 62.0 438 20.8
Gohir.D05G317650 Gossypium hirsutum HOM05D003868 ORTHO05D017991 3.2e-07 61.6 54 63.0
Gohir.A09G086698 Gossypium hirsutum HOM05D003868 ORTHO05D017991 9.2e-07 60.1 54 61.1
Gohir.D03G046101 Gossypium hirsutum HOM05D003868 ORTHO05D017991 9.2e-07 60.1 54 61.1
Gohir.D05G358720 Gossypium hirsutum HOM05D003868 ORTHO05D017991 9.2e-07 60.1 54 61.1
Gohir.D13G088850 Gossypium hirsutum HOM05D003868 ORTHO05D017991 9.2e-07 60.1 54 61.1
CBR_g66808 Chara braunii HOM05D003775 ORTHO05D004314 1.2e-06 59.7 306 24.5


User provided reference genes

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