Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C017274.2 Cucumis melo HOM05D000251 ORTHO05D007889 0.0e+00 1827.4 977 100.0
CsaV3_1G003490 Cucumis sativus L. HOM05D000251 ORTHO05D007889 0.0e+00 1618.2 992 88.9
ClCG06G015150 Citrullus lanatus HOM05D000251 ORTHO05D007889 0.0e+00 1495.7 1014 82.4
Sed0011411 Sechium edule HOM05D000251 ORTHO05D007889 0.0e+00 1435.2 996 79.4
CiPaw.15G123200 Carya illinoinensis HOM05D000251 ORTHO05D007889 3.2e-304 1048.5 918 63.0
Cfa019845 Carpinus fangiana HOM05D000251 ORTHO05D007889 2.4e-299 1032.3 1001 58.2
QL10p022316 Quercus lobata HOM05D000251 ORTHO05D007889 3.8e-297 1025.0 907 62.0
Dinv36870 Davidia involucrata HOM05D000251 ORTHO05D007889 9.6e-293 1010.4 843 64.4
MD14G1219700 Malus domestica HOM05D000251 ORTHO05D007889 6.9e-291 1004.2 918 61.0
MD06G1209200 Malus domestica HOM05D000251 ORTHO05D007889 9.9e-290 1000.3 919 60.9
Prupe.5G214300 Prunus persica HOM05D000251 ORTHO05D007889 2.7e-287 992.3 915 60.7
GSVIVG01008206001 Vitis vinifera HOM05D000251 ORTHO05D007889 3.9e-286 988.4 829 62.8
RcHm_v2.0_Chr7g0184311 Rosa chinensis HOM05D000251 ORTHO05D007889 6.2e-284 981.1 885 61.5
CSS0040641 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D007889 3.4e-282 975.3 968 58.2
TAR622G0769 Trochodendron aralioides HOM05D000251 ORTHO05D007889 3.4e-282 975.3 990 57.3
COL.COLO4_32187 Corchorus olitorius HOM05D000251 ORTHO05D007889 1.7e-281 973.0 828 62.7
Thecc.03G114900 Theobroma cacao HOM05D000251 ORTHO05D007889 3.8e-281 971.8 923 58.9
CANSAT80G2803 Cannabis sativa HOM05D000251 ORTHO05D007889 3.2e-280 968.8 904 59.1
Duzib205G0552 Durio zibethinus HOM05D000251 ORTHO05D007889 1.6e-279 966.5 915 59.1
Nn4g23656 Nelumbo nucifera HOM05D000251 ORTHO05D007889 4.6e-279 964.9 912 58.8
FAN18G2230 Fragaria x ananassa HOM05D000251 ORTHO05D007889 3.9e-278 961.8 838 62.3
Haze_18572 Corylus avellana HOM05D000251 ORTHO05D007889 1.5e-277 959.9 913 59.4
Potri.012G058100 Populus trichocarpa HOM05D000251 ORTHO05D007889 1.9e-277 959.5 908 58.6
Ciclev10018692m.g Citrus clementina HOM05D000251 ORTHO05D007889 5.6e-277 958.0 902 58.0
FvH4_5g12911 Fragaria vesca HOM05D000251 ORTHO05D007889 4.0e-275 951.8 885 59.9
Sabra12G0041800 Salix brachista HOM05D000251 ORTHO05D007889 3.4e-274 948.7 1008 57.0
Lj9C433G11 Lonicera japonica HOM05D000251 ORTHO05D007889 3.8e-273 945.3 833 61.3
Atru.chr9.705 Acer truncatum HOM05D000251 ORTHO05D007889 4.9e-273 944.9 897 58.2
FAN13G2548 Fragaria x ananassa HOM05D000251 ORTHO05D000414 8.4e-273 944.1 887 59.4
TWI81G0067 Tripterygium wilfordii HOM05D000251 ORTHO05D007889 9.3e-272 940.6 896 58.4
arahy.Tifrunner.gnm1.ann1.ESZ5GR Arachis hypogaea HOM05D000251 ORTHO05D007889 2.7e-271 939.1 895 58.3
Cc04_g07720 Coffea canephora HOM05D000251 ORTHO05D007889 7.9e-271 937.6 851 60.6
Gorai.003G106300 Gossypium raimondii HOM05D000251 ORTHO05D007889 1.8e-270 936.4 827 60.9
Actinidia31039 Actinidia chinensis HOM05D000251 ORTHO05D007889 2.3e-270 936.0 999 57.8
arahy.Tifrunner.gnm1.ann1.MAJ7P0 Arachis hypogaea HOM05D000251 ORTHO05D007889 2.3e-270 936.0 902 58.0
Glyma.05G015200 Glycine max HOM05D000251 ORTHO05D007889 3.0e-270 935.6 921 56.4
Lalb_Chr12g0197521 Lupinus albus HOM05D000251 ORTHO05D007889 8.7e-270 934.1 999 57.0
Nitab4.5_0000646g0050 Nicotiana tabacum HOM05D000251 ORTHO05D007889 2.5e-269 932.6 827 61.1
Rhsim08G0149100 Rhododendron simsii HOM05D000251 ORTHO05D007889 2.5e-269 932.6 995 54.8
Ca_02522_v3 Cicer arietinum L. HOM05D000251 ORTHO05D007889 7.4e-269 931.0 899 57.1
Gohir.A03G074400 Gossypium hirsutum HOM05D000251 ORTHO05D007889 7.4e-269 931.0 820 61.1
Gohir.D03G100900 Gossypium hirsutum HOM05D000251 ORTHO05D007889 2.1e-268 929.5 826 60.4
Nitab4.5_0004342g0020 Nicotiana tabacum HOM05D000251 ORTHO05D007889 1.1e-267 927.2 838 60.4
PGR044G2008 Punica granatum HOM05D000251 ORTHO05D007889 3.1e-267 925.6 829 61.9
VMungo1215G2774 Vigna mungo HOM05D000251 ORTHO05D007889 1.2e-266 923.7 840 59.6
Glyma.17G123700 Glycine max HOM05D000251 ORTHO05D007889 1.5e-266 923.3 976 55.0
Eucgr.K02644 Eucalyptus grandis HOM05D000251 ORTHO05D007889 5.0e-265 918.3 902 58.1
Psat4g045640 Pisum sativum HOM05D000251 ORTHO05D007889 6.5e-265 917.9 917 55.4
Medtr4g112420 Medicago truncatula HOM05D000251 ORTHO05D007889 1.9e-264 916.4 900 56.1
Lj4g0022759 Lotus japonicus HOM05D000251 ORTHO05D007889 2.5e-264 916.0 907 55.7
FAN18G3790 Fragaria x ananassa HOM05D000251 ORTHO05D007889 5.5e-264 914.8 922 56.2
Peaxi162Scf00017g03036 Petunia axillaris HOM05D000251 ORTHO05D007889 5.5e-264 914.8 904 56.2
EL10Ac5g11229 Beta vulgaris HOM05D000251 ORTHO05D007889 3.5e-263 912.1 809 59.6
CAN.G781.3 Capsicum annuum HOM05D000251 ORTHO05D007889 1.6e-260 903.3 828 59.3
Solyc03g114410.3 Solanum lycopersicum HOM05D000251 ORTHO05D007889 2.8e-260 902.5 831 59.0
Sopen03g033510 Solanum pennellii HOM05D000251 ORTHO05D007889 1.0e-257 894.0 914 55.0
Aqoxy3G00409 Aquilegia oxysepala HOM05D000251 ORTHO05D007889 1.9e-256 889.8 808 60.3
HanXRQChr05g0157761 Helianthus annuus HOM05D000251 ORTHO05D007889 1.9e-256 889.8 872 56.5
TPR.G2793 Trifolium pratense HOM05D000251 ORTHO05D007889 4.2e-256 888.6 904 54.8
Manes.05G117300 Manihot esculenta HOM05D000251 ORTHO05D007889 2.1e-255 886.3 742 63.7
Lsat_1_v5_gn_5_24161 Lactuca sativa HOM05D000251 ORTHO05D007889 6.1e-255 884.8 886 55.5
DCAR_015126 Daucus carota HOM05D000251 ORTHO05D007889 9.7e-253 877.5 980 53.4
Hund02531 Selenicereus undatus HOM05D000251 ORTHO05D007889 4.1e-251 872.1 913 54.2
SGA_v2.0_scaffold283G46981 Striga asiatica HOM05D000251 ORTHO05D007889 3.4e-250 869.0 880 55.8
ECA246G2449 Erigeron canadensis HOM05D000251 ORTHO05D007889 2.9e-249 865.9 900 55.7
AL6G34270 Arabidopsis lyrata HOM05D000251 ORTHO05D007889 3.8e-249 865.5 798 60.0
AUR62036928 Chenopodium quinoa HOM05D000251 ORTHO05D007889 6.5e-249 864.8 907 53.0
Migut.G01282 Erythranthe guttata HOM05D000251 ORTHO05D007889 1.4e-248 863.6 883 55.8
AT5G23080 Arabidopsis thaliana HOM05D000251 ORTHO05D007889 3.2e-248 862.4 794 59.6
Carub.0006s2087 Capsella rubella HOM05D000251 ORTHO05D007889 7.9e-247 857.8 837 57.5
Aa31LG11G2570 Aethionema arabicum HOM05D000251 ORTHO05D007889 5.1e-246 855.1 814 59.0
Sp2g24040 Schrenkiella parvula HOM05D000251 ORTHO05D007889 5.3e-243 845.1 796 58.9
THA.LOC104819385 Tarenaya hassleriana HOM05D000251 ORTHO05D007889 7.7e-242 841.3 803 59.3
A03p46430 Brassica napus HOM05D000251 ORTHO05D007889 2.3e-238 829.7 812 56.9
BraA03t13769Z Brassica rapa HOM05D000251 ORTHO05D007889 6.7e-238 828.2 881 54.0
PSO017G5760 Papaver somniferum HOM05D000251 ORTHO05D007889 3.3e-237 825.9 912 52.2
Thhalv10003608m.g Eutrema salsugineum HOM05D000251 ORTHO05D007889 5.7e-237 825.1 798 57.9
C07p44450 Brassica napus HOM05D000251 ORTHO05D007889 9.7e-237 824.3 848 55.1
A09p07070 Brassica napus HOM05D000251 ORTHO05D007889 1.7e-236 823.5 798 58.1
BolC7t44966H Brassica oleracea HOM05D000251 ORTHO05D007889 4.8e-236 822.0 848 55.0
Sc10g0009620 Simmondsia chinensis HOM05D000251 ORTHO05D007889 4.8e-236 822.0 740 59.5
vmacro17646 Vaccinium macrocarpon HOM05D000251 ORTHO05D007889 4.8e-236 822.0 953 50.2
BraA09t36355Z Brassica rapa HOM05D000251 ORTHO05D007889 2.7e-234 816.2 799 57.7
PSO478G4362 Papaver somniferum HOM05D000251 ORTHO05D007889 5.9e-234 815.1 918 51.9
AUR62032169 Chenopodium quinoa HOM05D000251 ORTHO05D007889 1.7e-233 813.5 905 50.7
BcaC04g23479 Brassica carinata HOM05D000251 ORTHO05D007889 1.1e-232 810.8 797 57.1
BolC9t53705H Brassica oleracea HOM05D000251 ORTHO05D007889 1.1e-232 810.8 797 57.1
Cpa.g.sc13.78 Carica papaya HOM05D000251 ORTHO05D007889 6.8e-230 801.6 743 59.2
C09p07920 Brassica napus HOM05D000251 ORTHO05D007889 2.0e-229 800.0 797 56.6
BcaB04g19889 Brassica carinata HOM05D000251 ORTHO05D007889 9.8e-229 797.7 790 57.6
ATR0723G093 Amborella trichopoda HOM05D000251 ORTHO05D007889 9.1e-227 791.2 832 54.3
Rhsim08G0139200 Rhododendron simsii HOM05D000251 ORTHO05D007889 6.1e-223 778.5 696 59.3
Phvul.003G179400 Phaseolus vulgaris HOM05D000251 ORTHO05D007889 3.4e-221 772.7 714 58.1
CDE08G0099 Ceratophyllum demersum HOM05D000251 ORTHO05D007889 2.0e-218 763.5 831 51.5
SalBow2G1753 Salvia bowleyana HOM05D000251 ORTHO05D007889 2.8e-215 753.1 896 49.8
unitig_736.g22471 Utricularia gibba HOM05D000251 ORTHO05D007889 2.2e-212 743.4 818 53.3
Os06g0489200 Oryza sativa ssp. japonica HOM05D000251 ORTHO05D007889 2.5e-208 729.9 892 48.3
Ah.02g114420 Amaranthus hybridus HOM05D000251 ORTHO05D007889 3.6e-199 699.5 828 49.3
Nn039s41709 Nelumbo nucifera HOM05D000251 ORTHO05D007889 7.1e-163 578.9 518 59.7
Pp3c6_280 Physcomitrium patens HOM05D000251 ORTHO05D007889 3.5e-154 550.1 847 43.1
AagrBONN_evm.TU.Sc2ySwM_344.5190 Anthoceros agrestis HOM05D000251 ORTHO05D007889 6.1e-146 522.7 977 38.8
HPP92_003115 Vanilla planifolia HOM05D000251 ORTHO05D007889 5.7e-144 516.2 650 48.9
SMO358G0348 Selaginella moellendorffii HOM05D000251 ORTHO05D007889 3.4e-141 506.9 824 39.7
CARHR190450 Cardamine hirsuta HOM05D000251 ORTHO05D007889 1.4e-139 501.5 509 56.4
Mapoly0043s0012 Marchantia polymorpha HOM05D000251 ORTHO05D007889 5.0e-132 476.5 866 38.3
Hma1.2p1_0595F.1_g186110 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 5.5e-123 446.4 355 62.8
SEGI_18733 Sequoiadendron giganteum HOM05D000251 ORTHO05D007889 9.1e-110 402.5 449 50.8
Zm00001eb382170 Zea mays HOM05D000251 ORTHO05D007889 1.1e-91 342.4 529 42.5
CBR_g57132 Chara braunii HOM05D000251 ORTHO05D007889 2.8e-82 311.2 1044 29.3
Hma1.2p1_0595F.1_g186100 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 5.2e-73 280.4 224 64.7
MCO14G468 Micromonas commoda HOM05D000251 ORTHO05D007889 6.6e-60 236.9 735 29.4
Actinidia16061 Actinidia chinensis HOM05D000251 ORTHO05D007889 2.8e-50 204.9 186 58.6
SHI18972 Sapria himalayana HOM05D000251 ORTHO05D007889 2.7e-45 188.3 107 84.1
BcaC06g33188 Brassica carinata HOM05D000251 ORTHO05D007889 2.5e-43 181.8 278 45.0
Ah.02g114430 Amaranthus hybridus HOM05D000169 ORTHO05D000542 9.6e-43 179.9 106 82.1
Cre13.g568700 Chlamydomonas reinhardtii HOM05D000251 ORTHO05D007889 1.1e-38 166.4 344 36.6
Actinidia16060 Actinidia chinensis HOM05D000251 ORTHO05D007889 5.1e-28 131.0 165 46.7
Psat4g067080 Pisum sativum HOM05D000251 ORTHO05D007889 1.8e-25 122.5 223 37.2
GSVIVG01008210001 Vitis vinifera HOM05D000251 ORTHO05D007889 1.6e-21 109.4 73 72.6
Cfa026338 Carpinus fangiana HOM05D000251 ORTHO05D007889 2.2e-18 99.0 768 24.5
Rhsim08G0139300 Rhododendron simsii HOM05D000251 ORTHO05D007889 1.9e-14 85.9 347 35.4
CiPaw.15G123400 Carya illinoinensis HOM05D000251 ORTHO05D007889 3.2e-14 85.1 90 54.4
Hma1.2p1_0690F.1_g203840 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 6.7e-12 77.4 46 78.3
Atru.chr7.2702 Acer truncatum HOM05D005511 ORTHO05D006616 8.2e-10 70.5 89 39.3
CsaV3_5G010440 Cucumis sativus L. HOM05D005511 ORTHO05D006616 1.1e-09 70.1 106 35.8
vmacro03505 Vaccinium macrocarpon HOM05D005511 ORTHO05D006616 1.1e-09 70.1 103 37.9
COL.COLO4_18647 Corchorus olitorius HOM05D005511 ORTHO05D006616 1.8e-09 69.3 147 32.7
Pp3c17_14220 Physcomitrium patens HOM05D005511 ORTHO05D006616 1.8e-09 69.3 141 34.0
Ciclev10014516m.g Citrus clementina HOM05D005511 ORTHO05D006616 1.6e-08 66.2 175 29.1
Gohir.A06G108200 Gossypium hirsutum HOM05D005511 ORTHO05D006616 1.6e-08 66.2 95 36.8
Thecc.09G000500 Theobroma cacao HOM05D005511 ORTHO05D006616 2.0e-08 65.9 111 34.2
Dinv37487 Davidia involucrata HOM05D005511 ORTHO05D006616 2.6e-08 65.5 89 39.3
MELO3C003615.2 Cucumis melo HOM05D005511 ORTHO05D006616 3.5e-08 65.1 83 39.8
MELO3C018377.2 Cucumis melo HOM05D005511 ORTHO05D006616 7.7e-08 63.9 83 39.8
Gorai.010G125400 Gossypium raimondii HOM05D005511 ORTHO05D006616 1.3e-07 63.2 95 35.8
Duzib168G0441 Durio zibethinus HOM05D005511 ORTHO05D006616 5.0e-07 61.2 174 29.9
HPP92_005904 Vanilla planifolia HOM05D005511 ORTHO05D006616 6.5e-07 60.8 89 39.3
Potri.006G279800 Populus trichocarpa HOM05D005511 ORTHO05D006616 1.5e-06 59.7 64 43.8
Medtr1g092770 Medicago truncatula HOM05D005511 ORTHO05D006616 1.9e-06 59.3 89 34.8
Sabra06G0216800 Salix brachista HOM05D005511 ORTHO05D006616 1.9e-06 59.3 64 43.8
CANSAT25G2351 Cannabis sativa HOM05D005511 ORTHO05D006616 2.5e-06 58.9 89 38.2
ClCG05G026390 Citrullus lanatus HOM05D005511 ORTHO05D006616 2.5e-06 58.9 143 32.2
Sabra18G0005200 Salix brachista HOM05D005511 ORTHO05D006616 2.5e-06 58.9 78 39.7
Psat5g176520 Pisum sativum HOM05D005511 ORTHO05D006616 3.2e-06 58.5 89 34.8
QL12p025629 Quercus lobata HOM05D005511 ORTHO05D006616 3.2e-06 58.5 87 39.1
Lsat_1_v5_gn_4_21520 Lactuca sativa HOM05D003221 ORTHO05D016847 5.5e-06 57.8 135 32.6
Lalb_Chr25g0287701 Lupinus albus HOM05D005511 ORTHO05D006616 5.5e-06 57.8 95 34.7
CDE07G1638 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 7.2e-06 57.4 73 39.7
CBR_g44445 Chara braunii HOM05D005511 ORTHO05D006616 7.2e-06 57.4 85 34.1
Ca_09096_v3 Cicer arietinum L. HOM05D005511 ORTHO05D006616 7.2e-06 57.4 89 36.0
CDE06G2039 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 9.4e-06 57.0 99 32.3
CBR_g29483 Chara braunii HOM05D000785 ORTHO05D006616 9.4e-06 57.0 85 35.3
TPR.G32311 Trifolium pratense HOM05D005511 ORTHO05D006616 9.4e-06 57.0 137 29.9


User provided reference genes

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