Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C013604.2 Cucumis melo HOM05D001670 ORTHO05D015222 1.3e-58 229.6 120 100.0
CsaV3_3G007410 Cucumis sativus L. HOM05D001670 ORTHO05D002980 5.7e-38 161.0 101 85.1
MELO3C005963.2 Cucumis melo HOM05D001670 ORTHO05D002980 4.8e-37 157.9 122 72.1
ClCG05G000260 Citrullus lanatus HOM05D001670 ORTHO05D002980 1.1e-36 156.8 122 71.3
Sed0002470 Sechium edule HOM05D001670 ORTHO05D002980 1.5e-35 152.9 122 69.7
Haze_02721 Corylus avellana HOM05D001670 ORTHO05D002980 1.4e-33 146.4 101 76.2
CiPaw.14G024400 Carya illinoinensis HOM05D001670 ORTHO05D002980 5.5e-33 144.4 101 73.3
QL04p035871 Quercus lobata HOM05D001670 ORTHO05D002980 9.4e-33 143.7 101 76.2
Cfa011137 Carpinus fangiana HOM05D001670 ORTHO05D002980 1.2e-32 143.3 101 75.2
Manes.05G050200 Manihot esculenta HOM05D001670 ORTHO05D002980 2.1e-32 142.5 111 67.6
Prupe.2G135900 Prunus persica HOM05D001670 ORTHO05D002980 2.1e-32 142.5 101 72.3
TWI59G0301 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 3.6e-32 141.7 101 71.3
Gohir.A11G078000 Gossypium hirsutum HOM05D001670 ORTHO05D002980 1.0e-31 140.2 101 73.3
Atru.chr5.219 Acer truncatum HOM05D001670 ORTHO05D002980 1.8e-31 139.4 101 73.3
Gorai.007G088100 Gossypium raimondii HOM05D001670 ORTHO05D002980 3.0e-31 138.7 101 73.3
CANSAT21G0618 Cannabis sativa HOM05D001670 ORTHO05D002980 3.9e-31 138.3 101 71.3
Sabra02G0111500 Salix brachista HOM05D001670 ORTHO05D002980 3.9e-31 138.3 111 67.6
MD07G1112500 Malus domestica HOM05D001670 ORTHO05D002980 6.7e-31 137.5 98 73.5
Duzib133G0195 Durio zibethinus HOM05D001670 ORTHO05D002980 8.8e-31 137.1 101 71.3
Ciclev10018430m.g Citrus clementina HOM05D001670 ORTHO05D002980 1.1e-30 136.7 101 73.3
Lj9C563G7 Lonicera japonica HOM05D001670 ORTHO05D002980 1.5e-30 136.3 109 65.1
Gohir.D11G082333 Gossypium hirsutum HOM05D001670 ORTHO05D002980 2.0e-30 136.0 101 72.3
Gohir.D11G082400 Gossypium hirsutum HOM05D001670 ORTHO05D002980 2.0e-30 136.0 101 72.3
Potri.014G058800 Populus trichocarpa HOM05D001670 ORTHO05D002980 2.0e-30 136.0 111 67.6
TPR.G28734 Trifolium pratense HOM05D001670 ORTHO05D002980 2.0e-30 136.0 98 72.4
arahy.Tifrunner.gnm1.ann1.5NE8AH Arachis hypogaea HOM05D001670 ORTHO05D002980 2.6e-30 135.6 100 71.0
Potri.002G143000 Populus trichocarpa HOM05D001670 ORTHO05D002980 2.6e-30 135.6 100 69.0
Thecc.01G385600 Theobroma cacao HOM05D001670 ORTHO05D002980 2.6e-30 135.6 100 72.0
Gorai.008G107100 Gossypium raimondii HOM05D001670 ORTHO05D002980 4.4e-30 134.8 101 69.3
Lalb_Chr13g0290371 Lupinus albus HOM05D001670 ORTHO05D002980 4.4e-30 134.8 100 71.0
CSS0023490 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 5.7e-30 134.4 100 68.0
CSS0045110 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 5.7e-30 134.4 100 68.0
Eucgr.E01609 Eucalyptus grandis HOM05D001670 ORTHO05D002980 5.7e-30 134.4 100 70.0
PGR042G0136 Punica granatum HOM05D001670 ORTHO05D002980 5.7e-30 134.4 122 61.5
Gohir.A12G095700 Gossypium hirsutum HOM05D001670 ORTHO05D002980 7.4e-30 134.0 101 69.3
Psat4g209400 Pisum sativum HOM05D001670 ORTHO05D002980 7.4e-30 134.0 97 71.1
FAN03G2300 Fragaria x ananassa HOM05D001670 ORTHO05D002980 9.7e-30 133.7 101 69.3
Medtr8g005820 Medicago truncatula HOM05D001670 ORTHO05D002980 9.7e-30 133.7 98 71.4
Ca_23116_v3 Cicer arietinum L. HOM05D001670 ORTHO05D002980 1.7e-29 132.9 98 71.4
Dinv44111 Davidia involucrata HOM05D001670 ORTHO05D002980 1.7e-29 132.9 100 69.0
Rhsim01G0135600 Rhododendron simsii HOM05D001670 ORTHO05D002980 1.7e-29 132.9 100 66.0
vmacro21039 Vaccinium macrocarpon HOM05D001670 ORTHO05D002980 1.7e-29 132.9 111 62.2
CiPaw.13G031300 Carya illinoinensis HOM05D001670 ORTHO05D002980 2.2e-29 132.5 101 67.3
Duzib268G0141 Durio zibethinus HOM05D001670 ORTHO05D002980 2.2e-29 132.5 101 69.3
Gohir.D12G098300 Gossypium hirsutum HOM05D001670 ORTHO05D002980 2.2e-29 132.5 101 68.3
Manes.01G270100 Manihot esculenta HOM05D001670 ORTHO05D002980 2.2e-29 132.5 117 60.7
TWI14G1227 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 2.8e-29 132.1 101 69.3
Peaxi162Scf00377g00038 Petunia axillaris HOM05D001670 ORTHO05D002980 4.8e-29 131.3 98 70.4
FvH4_7g10770 Fragaria vesca HOM05D001670 ORTHO05D002980 6.3e-29 131.0 101 69.3
FAN01G0667 Fragaria x ananassa HOM05D001670 ORTHO05D002980 6.3e-29 131.0 101 69.3
FAN06G0311 Fragaria x ananassa HOM05D001670 ORTHO05D002980 6.3e-29 131.0 101 69.3
FAN06G1683 Fragaria x ananassa HOM05D001670 ORTHO05D002980 6.3e-29 131.0 101 69.3
Hma1.2p1_0341F.1_g130260 Hydrangea macrophylla HOM05D001670 ORTHO05D002980 6.3e-29 131.0 100 68.0
Phvul.010G056800 Phaseolus vulgaris HOM05D001670 ORTHO05D002980 8.2e-29 130.6 97 70.1
VMungo0331G0876 Vigna mungo HOM05D001670 ORTHO05D002980 8.2e-29 130.6 97 70.1
COL.COLO4_12469 Corchorus olitorius HOM05D001670 ORTHO05D002980 1.1e-28 130.2 127 57.5
Nn6g33938 Nelumbo nucifera HOM05D001670 ORTHO05D002980 1.1e-28 130.2 101 70.3
CAN.G899.12 Capsicum annuum HOM05D001670 ORTHO05D002980 1.4e-28 129.8 100 69.0
FAN10G0390 Fragaria x ananassa HOM05D001670 ORTHO05D002980 1.4e-28 129.8 101 68.3
FAN10G2564 Fragaria x ananassa HOM05D001670 ORTHO05D002980 1.4e-28 129.8 101 68.3
Nitab4.5_0000706g0120 Nicotiana tabacum HOM05D001670 ORTHO05D002980 1.4e-28 129.8 100 68.0
THA.LOC104814077 Tarenaya hassleriana HOM05D001670 ORTHO05D002980 1.4e-28 129.8 104 65.4
Lalb_Chr07g0195691 Lupinus albus HOM05D001670 ORTHO05D002980 1.8e-28 129.4 100 68.0
RcHm_v2.0_Chr1g0348711 Rosa chinensis HOM05D001670 ORTHO05D002980 1.8e-28 129.4 100 68.0
TAR375G0686 Trochodendron aralioides HOM05D001670 ORTHO05D002980 1.8e-28 129.4 101 70.3
MD02G1214300 Malus domestica HOM05D001670 ORTHO05D002980 2.4e-28 129.0 101 67.3
THA.LOC104801485 Tarenaya hassleriana HOM05D001670 ORTHO05D002980 3.1e-28 128.6 100 69.0
Glyma.07G108700 Glycine max HOM05D001670 ORTHO05D002980 4.1e-28 128.3 97 70.1
Lj3g0005567 Lotus japonicus HOM05D001670 ORTHO05D002980 4.1e-28 128.3 100 68.0
Solyc01g090780.3 Solanum lycopersicum HOM05D001670 ORTHO05D002980 4.1e-28 128.3 100 66.0
Sopen01g036510 Solanum pennellii HOM05D001670 ORTHO05D002980 4.1e-28 128.3 100 66.0
Aqoxy6G02523 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 5.3e-28 127.9 101 70.3
Sc13g0006690 Simmondsia chinensis HOM05D001670 ORTHO05D002980 7.0e-28 127.5 100 66.0
Glyma.03G118400 Glycine max HOM05D001670 ORTHO05D002980 9.1e-28 127.1 97 70.1
GSVIVG01018178001 Vitis vinifera HOM05D001670 ORTHO05D002980 9.1e-28 127.1 101 64.4
Cc02_g24610 Coffea canephora HOM05D001670 ORTHO05D002980 2.0e-27 125.9 109 62.4
Migut.B01578 Erythranthe guttata HOM05D001670 ORTHO05D002980 2.0e-27 125.9 99 66.7
Nitab4.5_0002304g0030 Nicotiana tabacum HOM05D001670 ORTHO05D002980 2.0e-27 125.9 100 66.0
TAR629G1646 Trochodendron aralioides HOM05D001670 ORTHO05D002980 2.6e-27 125.6 101 70.3
Aqoxy7G00778 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 3.5e-27 125.2 101 66.3
MSTRG.20721 Avicennia marina HOM05D001670 ORTHO05D002980 5.9e-27 124.4 121 54.5
AUR62004150 Chenopodium quinoa HOM05D001670 ORTHO05D002980 7.7e-27 124.0 101 63.4
AUR62013711 Chenopodium quinoa HOM05D001670 ORTHO05D002980 7.7e-27 124.0 101 63.4
Lsat_1_v5_gn_7_10221 Lactuca sativa HOM05D001670 ORTHO05D002980 7.7e-27 124.0 109 59.6
CARHR000250 Cardamine hirsuta HOM05D001670 ORTHO05D002980 1.0e-26 123.6 100 65.0
DCAR_015867 Daucus carota HOM05D001670 ORTHO05D002980 1.0e-26 123.6 100 64.0
ECA236G0609 Erigeron canadensis HOM05D001670 ORTHO05D002980 1.0e-26 123.6 100 63.0
Thhalv10006521m.g Eutrema salsugineum HOM05D001670 ORTHO05D002980 1.0e-26 123.6 100 64.0
MBI04_g09509_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D002980 1.0e-26 123.6 101 66.3
SalBow5G2000 Salvia bowleyana HOM05D001670 ORTHO05D002980 1.0e-26 123.6 105 63.8
BcaB02g07859 Brassica carinata HOM05D001670 ORTHO05D002980 1.3e-26 123.2 100 64.0
SGA_v2.0_scaffold399G50813 Striga asiatica HOM05D001670 ORTHO05D002980 1.3e-26 123.2 105 62.9
Lj7C538T12 Lonicera japonica HOM05D001670 ORTHO05D002980 1.7e-26 122.9 97 67.0
C05p00130 Brassica napus HOM05D001670 ORTHO05D002980 2.2e-26 122.5 100 63.0
BolC5t28803H Brassica oleracea HOM05D001670 ORTHO05D002980 2.2e-26 122.5 100 63.0
AL1G10200 Arabidopsis lyrata HOM05D001670 ORTHO05D002980 2.9e-26 122.1 100 64.0
BcaC08g44594 Brassica carinata HOM05D001670 ORTHO05D002980 2.9e-26 122.1 100 65.0
C06p20660 Brassica napus HOM05D001670 ORTHO05D002980 2.9e-26 122.1 100 65.0
BolC6t37249H Brassica oleracea HOM05D001670 ORTHO05D002980 2.9e-26 122.1 100 65.0
Sp1g00220 Schrenkiella parvula HOM05D001670 ORTHO05D002980 2.9e-26 122.1 100 63.0
BraA10t42293Z Brassica rapa HOM05D001670 ORTHO05D002980 3.8e-26 121.7 100 63.0
AT1G02080 Arabidopsis thaliana HOM05D001670 ORTHO05D002980 5.0e-26 121.3 100 63.0
BraA09t42277Z Brassica rapa HOM05D001670 ORTHO05D002980 5.0e-26 121.3 100 63.0
Hund27384 Selenicereus undatus HOM05D001670 ORTHO05D002980 5.0e-26 121.3 100 63.0
A07p21180 Brassica napus HOM05D001670 ORTHO05D002980 6.5e-26 120.9 100 64.0
C08p54070 Brassica napus HOM05D001670 ORTHO05D002980 6.5e-26 120.9 100 63.0
BolC8t52916H Brassica oleracea HOM05D001670 ORTHO05D002980 6.5e-26 120.9 100 63.0
BraA07t29805Z Brassica rapa HOM05D001670 ORTHO05D002980 6.5e-26 120.9 100 64.0
Carub.0001s0015 Capsella rubella HOM05D001670 ORTHO05D002980 6.5e-26 120.9 100 64.0
BcaB03g13629 Brassica carinata HOM05D001670 ORTHO05D002980 1.1e-25 120.2 100 62.0
GSVIVG01000874001 Vitis vinifera HOM05D001670 ORTHO05D002980 1.1e-25 120.2 112 60.7
HanXRQChr06g0168951 Helianthus annuus HOM05D001670 ORTHO05D002980 1.5e-25 119.8 98 63.3
arahy.Tifrunner.gnm1.ann1.1V1Y36 Arachis hypogaea HOM05D001670 ORTHO05D002980 2.5e-25 119.0 111 61.3
A10p00140 Brassica napus HOM05D001670 ORTHO05D002980 2.5e-25 119.0 100 62.0
BcaNung05287 Brassica carinata HOM05D001670 ORTHO05D002980 3.2e-25 118.6 99 60.6
BcaC07g42342 Brassica carinata HOM05D001670 ORTHO05D002980 4.2e-25 118.2 100 61.0
EL10Ac1g00822 Beta vulgaris HOM05D001670 ORTHO05D002980 5.5e-25 117.9 101 60.4
CDE11G1219 Ceratophyllum demersum HOM05D001670 ORTHO05D002980 5.5e-25 117.9 101 63.4
HanXRQChr04g0123421 Helianthus annuus HOM05D001670 ORTHO05D002980 2.1e-24 115.9 111 56.8
Aa31LG1G11410 Aethionema arabicum HOM05D001670 ORTHO05D002980 3.6e-24 115.2 101 63.4
Ah.05g173600 Amaranthus hybridus HOM05D001670 ORTHO05D002980 3.6e-24 115.2 101 61.4
Atru.chr1.760 Acer truncatum HOM05D001670 ORTHO05D002980 8.0e-24 114.0 122 52.5
HPP92_007431 Vanilla planifolia HOM05D001670 ORTHO05D002980 8.8e-23 110.5 102 56.9
CSS0047652 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D015222 1.2e-22 110.2 110 57.3
ATR0317G075 Amborella trichopoda HOM05D001670 ORTHO05D002980 2.0e-22 109.4 102 54.9
Dinv06565 Davidia involucrata HOM05D001670 ORTHO05D002980 2.0e-22 109.4 101 59.4
Duzib068G1107 Durio zibethinus HOM05D001670 ORTHO05D002980 4.4e-22 108.2 98 61.2
Os10g0556700 Oryza sativa ssp. japonica HOM05D001670 ORTHO05D002980 2.8e-21 105.5 106 52.8
Actinidia24999 Actinidia chinensis HOM05D001670 ORTHO05D002980 1.4e-20 103.2 98 60.2
Oeu064574.1 Olea europaea HOM05D001670 ORTHO05D002980 1.8e-20 102.8 98 58.2
SGA_v2.0_scaffold153G36957 Striga asiatica HOM05D001670 ORTHO05D002980 3.1e-20 102.1 100 57.0
Oeu000038.3 Olea europaea HOM05D001670 ORTHO05D002980 4.1e-20 101.7 98 57.1
PSO104G0201 Papaver somniferum HOM05D001670 ORTHO05D002980 4.1e-20 101.7 97 57.7
DCAR_025093 Daucus carota HOM05D001670 ORTHO05D002980 7.0e-20 100.9 128 47.7
Rhsim03G0166300 Rhododendron simsii HOM05D001670 ORTHO05D002980 1.6e-19 99.8 101 57.4
PSO421G0693 Papaver somniferum HOM05D001670 ORTHO05D002980 2.0e-19 99.4 97 56.7
Mapoly0037s0011 Marchantia polymorpha HOM05D001670 ORTHO05D002980 2.7e-19 99.0 121 44.6
Pp3c5_6540 Physcomitrium patens HOM05D001670 ORTHO05D002980 3.5e-19 98.6 115 47.8
Oeu061519.1 Olea europaea HOM05D001670 ORTHO05D002980 5.9e-19 97.8 109 52.3
SHI13578 Sapria himalayana HOM05D001670 ORTHO05D002980 2.9e-18 95.5 116 47.4
Zm00001eb000340 Zea mays HOM05D001670 ORTHO05D002980 2.9e-18 95.5 122 45.9
Hund17061 Selenicereus undatus HOM05D001670 ORTHO05D002980 3.8e-18 95.1 100 52.0
CSS0031316 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D015222 8.5e-18 94.0 78 65.4
CBR_g37673 Chara braunii HOM05D001670 ORTHO05D002980 8.5e-18 94.0 101 49.5
Pp3c6_26730 Physcomitrium patens HOM05D001670 ORTHO05D002980 1.9e-17 92.8 111 45.9
Zm00001eb404410 Zea mays HOM05D001670 ORTHO05D002980 4.2e-17 91.7 79 60.8
Pp3c21_18770 Physcomitrium patens HOM05D001670 ORTHO05D002980 2.1e-16 89.4 101 46.5
Thecc.03G154100 Theobroma cacao HOM05D001670 ORTHO05D002980 1.2e-14 83.6 83 56.6
Lsat_1_v5_gn_4_44320 Lactuca sativa HOM05D001670 ORTHO05D002980 2.0e-14 82.8 85 51.8
arahy.Tifrunner.gnm1.ann1.NUD6QU Arachis hypogaea HOM05D001670 ORTHO05D015222 9.8e-14 80.5 67 67.2
Cpa.g.sc587.1 Carica papaya HOM05D001670 ORTHO05D002980 9.8e-14 80.5 65 61.5
arahy.Tifrunner.gnm1.ann1.A8401K Arachis hypogaea HOM05D001670 ORTHO05D015222 1.8e-12 76.3 98 44.9
BcaNung05010 Brassica carinata HOM05D001670 ORTHO05D010670 1.2e-11 73.6 68 57.4
Lj5A710T19 Lonicera japonica HOM05D001670 ORTHO05D015222 1.2e-11 73.6 69 60.9
Actinidia20642 Actinidia chinensis HOM05D001670 ORTHO05D015222 2.7e-11 72.4 66 62.1
Psat5g172200 Pisum sativum HOM05D001670 ORTHO05D015028 7.7e-11 70.9 65 55.4
Actinidia00128 Actinidia chinensis HOM05D001670 ORTHO05D015222 3.8e-10 68.6 62 64.5
Psat0s3411g0160 Pisum sativum HOM05D001670 ORTHO05D015222 2.5e-09 65.9 65 53.8


User provided reference genes

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