Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C012834.2 Cucumis melo HOM05D006183 ORTHO05D007844 0.0e+00 1236.9 651 100.0
CsaV3_3G028460 Cucumis sativus L. HOM05D006183 ORTHO05D007844 0.0e+00 1189.9 651 96.6
ClCG07G001450 Citrullus lanatus HOM05D006183 ORTHO05D007844 0.0e+00 1144.4 665 92.0
Sed0027453 Sechium edule HOM05D006183 ORTHO05D007844 5.7e-310 1067.0 657 87.4
QL09p042323 Quercus lobata HOM05D006183 ORTHO05D007844 1.3e-285 986.1 650 78.9
Duzib133G1169 Durio zibethinus HOM05D006183 ORTHO05D007844 2.9e-285 984.9 652 78.8
PGR044G1356 Punica granatum HOM05D006183 ORTHO05D007844 6.4e-285 983.8 658 79.8
CSS0020724 Camellia sinensis var. sinensis HOM05D006183 ORTHO05D007844 1.9e-284 982.2 673 77.7
CiPaw.04G191000 Carya illinoinensis HOM05D006183 ORTHO05D007844 1.9e-284 982.2 657 79.6
Prupe.8G213600 Prunus persica HOM05D006183 ORTHO05D007844 3.5e-283 978.0 650 77.8
Cpa.g.sc87.44 Carica papaya HOM05D006183 ORTHO05D007844 1.1e-281 973.0 651 78.3
vmacro02713 Vaccinium macrocarpon HOM05D006183 ORTHO05D007844 1.5e-281 972.6 656 78.5
VMungo1383G1346 Vigna mungo HOM05D006183 ORTHO05D007844 7.3e-281 970.3 651 78.0
Thecc.01G248600 Theobroma cacao HOM05D006183 ORTHO05D007844 1.2e-280 969.5 651 79.3
Nitab4.5_0009671g0010 Nicotiana tabacum HOM05D006183 ORTHO05D007844 2.1e-280 968.8 661 75.8
Cfa002493 Carpinus fangiana HOM05D006183 ORTHO05D007844 8.1e-280 966.8 659 77.7
Sopen06g002920 Solanum pennellii HOM05D006183 ORTHO05D007844 1.4e-279 966.1 667 75.4
Haze_24717 Corylus avellana HOM05D006183 ORTHO05D007844 4.0e-279 964.5 661 78.1
Gorai.001G237200 Gossypium raimondii HOM05D006183 ORTHO05D007844 5.2e-279 964.1 657 78.5
Rhsim13G0040400 Rhododendron simsii HOM05D006183 ORTHO05D007844 5.2e-279 964.1 660 75.0
FAN15G0492 Fragaria x ananassa HOM05D006183 ORTHO05D007844 1.5e-278 962.6 652 77.0
Gohir.A07G203800 Gossypium hirsutum HOM05D006183 ORTHO05D007844 4.4e-278 961.1 653 78.7
Gohir.D07G209800 Gossypium hirsutum HOM05D006183 ORTHO05D007844 7.6e-278 960.3 657 76.6
PGSC0003DMG400014711 Solanum tuberosum HOM05D006183 ORTHO05D007844 9.9e-278 959.9 665 75.2
arahy.Tifrunner.gnm1.ann1.73B1UV Arachis hypogaea HOM05D006183 ORTHO05D007844 3.8e-277 958.0 654 77.8
Glyma.19G169500 Glycine max HOM05D006183 ORTHO05D007844 6.4e-277 957.2 651 74.5
MD10G1174900 Malus domestica HOM05D006183 ORTHO05D007844 6.4e-277 957.2 651 75.6
FAN24G0209 Fragaria x ananassa HOM05D006183 ORTHO05D007844 8.4e-277 956.8 650 77.7
arahy.Tifrunner.gnm1.ann1.P69TYL Arachis hypogaea HOM05D006183 ORTHO05D007844 1.1e-276 956.4 659 77.2
Nitab4.5_0000326g0320 Nicotiana tabacum HOM05D006183 ORTHO05D007844 1.1e-276 956.4 658 75.4
FvH4_2g20290 Fragaria vesca HOM05D006183 ORTHO05D007844 3.2e-276 954.9 650 77.5
Lj1A75T45 Lonicera japonica HOM05D006183 ORTHO05D007844 4.2e-276 954.5 654 75.7
Phvul.001G166600 Phaseolus vulgaris HOM05D006183 ORTHO05D007844 1.2e-275 953.0 651 77.0
Dinv43057 Davidia involucrata HOM05D006183 ORTHO05D007844 1.6e-275 952.6 713 71.4
RcHm_v2.0_Chr6g0286091 Rosa chinensis HOM05D006183 ORTHO05D007844 7.8e-275 950.3 651 75.3
Atru.chr5.1959 Acer truncatum HOM05D006183 ORTHO05D007844 3.0e-274 948.3 651 76.5
Sabra14G0143600 Salix brachista HOM05D006183 ORTHO05D007844 1.9e-273 945.7 658 75.2
Ca_08753_v3 Cicer arietinum L. HOM05D006183 ORTHO05D007844 2.5e-273 945.3 654 76.8
Cc01_g17710 Coffea canephora HOM05D006183 ORTHO05D007844 5.6e-273 944.1 665 74.7
Hma1.2p1_2051F.1_g312550 Hydrangea macrophylla HOM05D006183 ORTHO05D007844 5.6e-273 944.1 651 75.9
TAR636G3003 Trochodendron aralioides HOM05D006183 ORTHO05D007844 1.3e-272 943.0 690 72.5
SGA_v2.0_scaffold1G00669 Striga asiatica HOM05D006183 ORTHO05D007844 3.6e-272 941.4 678 74.0
Manes.13G038900 Manihot esculenta HOM05D006183 ORTHO05D007844 6.2e-272 940.6 653 76.6
Psat3g051320 Pisum sativum HOM05D006183 ORTHO05D007844 6.2e-272 940.6 654 75.8
Lj1g0002370 Lotus japonicus HOM05D006183 ORTHO05D007844 6.9e-271 937.2 651 74.2
Hund18298 Selenicereus undatus HOM05D006183 ORTHO05D007844 4.5e-270 934.5 651 76.3
Sc17g0002990 Simmondsia chinensis HOM05D006183 ORTHO05D007844 4.5e-270 934.5 649 74.1
MSTRG.18360 Avicennia marina HOM05D006183 ORTHO05D007844 5.8e-270 934.1 698 72.8
TPR.G20058 Trifolium pratense HOM05D006183 ORTHO05D007844 9.9e-270 933.3 651 76.0
Ciclev10019299m.g Citrus clementina HOM05D006183 ORTHO05D007844 1.3e-269 932.9 652 75.9
DCAR_018527 Daucus carota HOM05D006183 ORTHO05D007844 2.2e-269 932.2 666 70.9
Medtr7g098900 Medicago truncatula HOM05D006183 ORTHO05D007844 3.8e-269 931.4 655 73.1
Eucgr.K01415 Eucalyptus grandis HOM05D006183 ORTHO05D007844 7.1e-268 927.2 681 74.4
Potri.014G193500 Populus trichocarpa HOM05D006183 ORTHO05D007844 9.3e-268 926.8 669 73.2
EL10Ac7g17706 Beta vulgaris HOM05D006183 ORTHO05D007844 1.6e-267 926.0 649 74.6
Lsat_1_v5_gn_5_180141 Lactuca sativa HOM05D006183 ORTHO05D007844 1.9e-265 919.1 657 74.1
Migut.D00486 Erythranthe guttata HOM05D006183 ORTHO05D007844 2.8e-264 915.2 681 71.1
GSVIVG01028442001 Vitis vinifera HOM05D006183 ORTHO05D007844 1.4e-263 912.9 650 75.4
ATR0751G065 Amborella trichopoda HOM05D006183 ORTHO05D007844 4.0e-263 911.4 649 71.3
PSO210G4577 Papaver somniferum HOM05D006183 ORTHO05D007844 9.0e-263 910.2 655 71.9
Aqoxy5G00112 Aquilegia oxysepala HOM05D006183 ORTHO05D007844 7.6e-262 907.1 661 72.2
Oeu015440.1 Olea europaea HOM05D006183 ORTHO05D007844 3.8e-261 904.8 706 70.5
Lalb_Chr20g0113511 Lupinus albus HOM05D006183 ORTHO05D007844 9.3e-260 900.2 650 73.8
Sp3g33570 Schrenkiella parvula HOM05D006183 ORTHO05D007844 1.2e-259 899.8 662 71.6
ECA248G2561 Erigeron canadensis HOM05D006183 ORTHO05D007844 4.6e-259 897.9 651 72.8
SalBow4G1671 Salvia bowleyana HOM05D006183 ORTHO05D007844 6.0e-259 897.5 744 66.8
Solyc06g008110.4 Solanum lycopersicum HOM05D006183 ORTHO05D007844 2.5e-257 892.1 668 71.0
THA.LOC104814536 Tarenaya hassleriana HOM05D006183 ORTHO05D007844 9.6e-257 890.2 669 71.0
Thhalv10001927m.g Eutrema salsugineum HOM05D006183 ORTHO05D007844 2.1e-256 889.0 665 71.7
Peaxi162Scf00499g00067 Petunia axillaris HOM05D006183 ORTHO05D007844 1.8e-255 885.9 651 73.1
BcaB03g16820 Brassica carinata HOM05D006183 ORTHO05D007844 4.0e-255 884.8 648 72.4
AL3G53280 Arabidopsis lyrata HOM05D006183 ORTHO05D007844 1.9e-252 875.9 657 70.5
CARHR110860 Cardamine hirsuta HOM05D006183 ORTHO05D007844 5.5e-252 874.4 657 72.6
SHI26778 Sapria himalayana HOM05D006183 ORTHO05D007844 5.5e-252 874.4 660 68.8
HanXRQChr03g0066991 Helianthus annuus HOM05D006183 ORTHO05D007844 1.3e-250 869.8 652 69.6
AT2G20330 Arabidopsis thaliana HOM05D006183 ORTHO05D007844 3.0e-250 868.6 660 70.6
AUR62008815 Chenopodium quinoa HOM05D006183 ORTHO05D007844 3.9e-250 868.2 649 67.3
Carub.0003s3467 Capsella rubella HOM05D006183 ORTHO05D007844 1.9e-249 865.9 662 71.3
A07p00380 Brassica napus HOM05D006183 ORTHO05D007844 4.3e-249 864.8 655 69.3
BraA07t27830Z Brassica rapa HOM05D006183 ORTHO05D007844 7.4e-249 864.0 658 69.5
Aa31LG8G17320 Aethionema arabicum HOM05D006183 ORTHO05D007844 4.1e-247 858.2 666 67.6
SEGI_33423 Sequoiadendron giganteum HOM05D006183 ORTHO05D007844 1.2e-246 856.7 697 63.3
MBI10_g16795_MAGBIO Magnolia biondii HOM05D006183 ORTHO05D007844 7.6e-246 854.0 839 56.5
BcaC06g36716 Brassica carinata HOM05D006183 ORTHO05D007844 2.9e-245 852.0 649 69.2
BolC7t40519H Brassica oleracea HOM05D006183 ORTHO05D007844 2.9e-245 852.0 649 69.2
C07p00800 Brassica napus HOM05D006183 ORTHO05D007844 2.7e-243 845.5 648 69.8
Os10g0464100 Oryza sativa ssp. japonica HOM05D006183 ORTHO05D007844 7.9e-243 844.0 481 81.5
AUR62025425 Chenopodium quinoa HOM05D006183 ORTHO05D007844 1.8e-242 842.8 661 65.2
CDE02G0751 Ceratophyllum demersum HOM05D006183 ORTHO05D007844 1.6e-240 836.3 641 69.3
Zm00001eb222270 Zea mays HOM05D006183 ORTHO05D007844 4.1e-239 831.6 482 80.5
Lj1A75T44 Lonicera japonica HOM05D006183 ORTHO05D007844 6.5e-237 824.3 634 69.7
COL.COLO4_20954 Corchorus olitorius HOM05D006183 ORTHO05D007844 4.2e-236 821.6 658 66.4
HPP92_025390 Vanilla planifolia HOM05D006183 ORTHO05D007844 5.1e-234 814.7 562 70.8
FAN27G0957 Fragaria x ananassa HOM05D006183 ORTHO05D007844 1.4e-231 806.6 443 85.1
Actinidia37559 Actinidia chinensis HOM05D006183 ORTHO05D007844 2.4e-231 805.8 551 78.8
AagrBONN_evm.TU.Sc2ySwM_228.230 Anthoceros agrestis HOM05D006183 ORTHO05D007844 9.7e-225 783.9 648 60.3
Actinidia30118 Actinidia chinensis HOM05D006183 ORTHO05D007844 1.5e-196 690.3 640 61.1
CBR_g29722 Chara braunii HOM05D006183 ORTHO05D007844 2.3e-194 682.9 500 65.4
Pp3c3_26410 Physcomitrium patens HOM05D006183 ORTHO05D007844 4.9e-192 675.2 654 58.9
Mapoly0020s0160 Marchantia polymorpha HOM05D006183 ORTHO05D007844 7.0e-191 671.4 658 58.5
SMO117G0187 Selaginella moellendorffii HOM05D006183 ORTHO05D007844 8.6e-189 664.5 645 56.1
Dinv19261 Davidia involucrata HOM05D006183 ORTHO05D007844 5.8e-169 598.6 461 71.8
SEGI_26680 Sequoiadendron giganteum HOM05D006183 ORTHO05D007844 1.1e-162 577.8 546 56.6
MD05G1186900 Malus domestica HOM05D006183 ORTHO05D007844 1.9e-159 567.0 554 56.9
Cre04.g217750 Chlamydomonas reinhardtii HOM05D006183 ORTHO05D007844 2.0e-121 440.7 518 45.0
MCO16G174 Micromonas commoda HOM05D006183 ORTHO05D007844 2.0e-116 424.1 495 45.1
unitig_22.g6309 Utricularia gibba HOM05D006183 ORTHO05D007844 2.5e-111 407.1 388 61.6
Rhsim08G0025400 Rhododendron simsii HOM05D006183 ORTHO05D007844 9.1e-106 388.7 365 58.9
BcaNung04798 Brassica carinata HOM05D006183 ORTHO05D007844 3.6e-102 376.7 286 66.4
C09p15190 Brassica napus HOM05D006183 ORTHO05D007844 3.6e-102 376.7 286 66.4
BolC9t54425H Brassica oleracea HOM05D006183 ORTHO05D007844 3.6e-102 376.7 286 66.4
AagrBONN_evm.TU.Sc2ySwM_117.1688 Anthoceros agrestis HOM05D006183 ORTHO05D007844 4.6e-73 280.0 347 46.7
SHI26811 Sapria himalayana HOM05D006183 ORTHO05D007844 1.8e-69 268.1 339 47.2
PRCOL_00006356 Prasinoderma coloniale HOM05D006183 ORTHO05D007844 2.8e-62 244.2 535 34.2
Cfa024676 Carpinus fangiana HOM05D006183 ORTHO05D007844 6.0e-57 226.5 495 32.9
unitig_22.g6310 Utricularia gibba HOM05D006183 ORTHO05D007844 3.2e-50 204.1 107 86.0
AagrBONN_evm.TU.Sc2ySwM_117.1686 Anthoceros agrestis HOM05D006183 ORTHO05D007844 5.3e-37 160.2 106 69.8
RcHm_v2.0_Chr6g0286201 Rosa chinensis HOM05D006183 ORTHO05D007844 1.2e-28 132.5 87 74.7
Oeu052089.1 Olea europaea HOM05D000700 ORTHO05D000397 3.3e-15 87.8 108 51.9
Dinv36951 Davidia involucrata HOM05D006183 ORTHO05D007844 9.0e-13 79.7 47 78.7
HanXRQChr13g0404811 Helianthus annuus HOM05D006183 ORTHO05D007844 4.5e-12 77.4 60 58.3
HanXRQChr14g0442591 Helianthus annuus HOM05D006183 ORTHO05D007844 7.7e-12 76.6 60 56.7
QL09p042264 Quercus lobata HOM05D006183 ORTHO05D007844 7.7e-12 76.6 231 32.5
BcaB07g31601 Brassica carinata HOM05D006183 ORTHO05D007844 1.9e-10 72.0 98 42.9
HPP92_028272 Vanilla planifolia HOM05D006183 ORTHO05D007844 1.6e-09 68.9 40 72.5
Psat6g019720 Pisum sativum HOM05D003913 ORTHO05D004803 6.1e-09 67.0 189 29.6
Lalb_Chr19g0128501 Lupinus albus HOM05D003335 ORTHO05D003853 1.4e-08 65.9 286 24.1
AagrBONN_evm.TU.Sc2ySwM_117.1687 Anthoceros agrestis HOM05D006183 ORTHO05D007844 3.0e-08 64.7 56 58.9
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 3.0e-08 64.7 214 28.0
Psat6g188560 Pisum sativum HOM05D000168 ORTHO05D004803 1.5e-07 62.4 215 27.0
MBI16_g15538_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 5.7e-07 60.5 174 23.0
Cre06.g255400 Chlamydomonas reinhardtii HOM05D005323 ORTHO05D006820 2.2e-06 58.5 207 22.7
EL10Ac9g21859 Beta vulgaris HOM05D003913 ORTHO05D004803 8.2e-06 56.6 136 29.4
Haze_26415 Corylus avellana HOM05D000347 ORTHO05D001997 8.2e-06 56.6 141 26.2
TPR.G30584 Trifolium pratense HOM05D003913 ORTHO05D004803 8.2e-06 56.6 136 30.1


User provided reference genes

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