Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C012446.2 Cucumis melo HOM05D004944 ORTHO05D005989 0.0e+00 1290.0 650 100.0
Sed0005559 Sechium edule HOM05D004944 ORTHO05D005989 0.0e+00 1112.8 652 86.0
ClCG05G020810 Citrullus lanatus HOM05D004944 ORTHO05D005989 0.0e+00 1098.6 683 84.2
CsaV3_5G036480 Cucumis sativus L. HOM05D004944 ORTHO05D005989 1.4e-260 902.9 480 95.0
Dinv32057 Davidia involucrata HOM05D004944 ORTHO05D005989 4.0e-247 858.2 676 64.3
QL04p013327 Quercus lobata HOM05D004944 ORTHO05D005989 4.9e-245 851.3 668 66.2
Atru.chr11.2502 Acer truncatum HOM05D004944 ORTHO05D005989 1.6e-243 846.3 670 65.2
CiPaw.13G010200 Carya illinoinensis HOM05D004944 ORTHO05D005989 1.5e-241 839.7 658 65.8
Haze_03113 Corylus avellana HOM05D004944 ORTHO05D005989 5.7e-241 837.8 685 64.2
Ciclev10030882m.g Citrus clementina HOM05D004944 ORTHO05D005989 1.1e-239 833.6 669 64.7
Hma1.2p1_0184F.1_g081120 Hydrangea macrophylla HOM05D004944 ORTHO05D005989 3.4e-238 828.6 676 63.6
Medtr3g022850 Medicago truncatula HOM05D004944 ORTHO05D005989 3.4e-238 828.6 660 64.4
VMungo1080G1012 Vigna mungo HOM05D004944 ORTHO05D005989 4.5e-238 828.2 650 65.5
Glyma.11G150100 Glycine max HOM05D004944 ORTHO05D005989 6.5e-237 824.3 650 65.4
Actinidia06272 Actinidia chinensis HOM05D004944 ORTHO05D005989 1.0e-234 817.0 668 62.3
Lj3g0016020 Lotus japonicus HOM05D004944 ORTHO05D005989 8.8e-234 813.9 667 63.3
GSVIVG01000850001 Vitis vinifera HOM05D004944 ORTHO05D005989 3.3e-233 812.0 668 62.4
TWI15G1108 Tripterygium wilfordii HOM05D004944 ORTHO05D005989 3.1e-231 805.4 669 63.5
MD02G1296200 Malus domestica HOM05D004944 ORTHO05D005989 3.4e-230 802.0 673 61.4
Potri.003G202300 Populus trichocarpa HOM05D004944 ORTHO05D005989 8.8e-226 787.3 664 61.0
Migut.N01817 Erythranthe guttata HOM05D004944 ORTHO05D005989 1.1e-225 786.9 690 60.3
TAR636G1724 Trochodendron aralioides HOM05D004944 ORTHO05D005989 1.5e-225 786.6 673 61.7
Cfa010847 Carpinus fangiana HOM05D004944 ORTHO05D005989 3.3e-225 785.4 662 62.7
Sabra03G0149500 Salix brachista HOM05D004944 ORTHO05D005989 1.8e-223 779.6 706 57.9
Gorai.013G015500 Gossypium raimondii HOM05D004944 ORTHO05D005989 2.4e-223 779.2 647 62.3
Thecc.10G005400 Theobroma cacao HOM05D004944 ORTHO05D005989 7.0e-223 777.7 648 62.7
Duzib128G1953 Durio zibethinus HOM05D004944 ORTHO05D005989 1.2e-222 776.9 648 61.6
arahy.Tifrunner.gnm1.ann1.L5CKR4 Arachis hypogaea HOM05D004944 ORTHO05D005989 8.5e-221 770.8 663 61.8
Gohir.D13G014300 Gossypium hirsutum HOM05D004944 ORTHO05D005989 1.1e-220 770.4 647 61.7
arahy.Tifrunner.gnm1.ann1.YV81B1 Arachis hypogaea HOM05D004944 ORTHO05D005989 2.5e-220 769.2 687 60.6
RcHm_v2.0_Chr1g0319541 Rosa chinensis HOM05D004944 ORTHO05D005989 1.8e-218 763.1 669 59.8
Prupe.2G028500 Prunus persica HOM05D004944 ORTHO05D005989 3.9e-218 761.9 675 60.0
SGA_v2.0_scaffold5G02935 Striga asiatica HOM05D004944 ORTHO05D005989 3.3e-217 758.8 668 60.3
TPR.G18800 Trifolium pratense HOM05D004944 ORTHO05D005989 1.3e-216 756.9 657 60.4
CANSAT80G2771 Cannabis sativa HOM05D004944 ORTHO05D005989 4.8e-216 755.0 669 59.3
Eucgr.G03259 Eucalyptus grandis HOM05D004944 ORTHO05D005989 1.8e-215 753.1 671 57.2
Cc02_g29470 Coffea canephora HOM05D004944 ORTHO05D005989 3.1e-215 752.3 692 57.2
Sopen01g030310 Solanum pennellii HOM05D004944 ORTHO05D005989 6.5e-213 744.6 672 57.1
CAN.G410.46 Capsicum annuum HOM05D004944 ORTHO05D005989 7.2e-212 741.1 679 56.7
FAN06G2455 Fragaria x ananassa HOM05D004944 ORTHO05D005989 2.7e-211 739.2 673 57.4
FvH4_7g02220 Fragaria vesca HOM05D004944 ORTHO05D005989 1.4e-210 736.9 673 57.2
FAN03G3505 Fragaria x ananassa HOM05D004944 ORTHO05D005989 2.0e-209 733.0 694 55.9
THA.LOC104819120 Tarenaya hassleriana HOM05D004944 ORTHO05D005989 4.1e-207 725.3 668 56.4
Lalb_Chr04g0263921 Lupinus albus HOM05D004944 ORTHO05D005989 2.0e-206 723.0 593 63.4
COL.COLO4_25841 Corchorus olitorius HOM05D004944 ORTHO05D005989 1.0e-205 720.7 609 61.6
PGR031G0610 Punica granatum HOM05D004944 ORTHO05D005989 2.2e-205 719.5 645 59.7
SalBow2G1212 Salvia bowleyana HOM05D004944 ORTHO05D005989 1.9e-204 716.5 738 55.0
FAN01G0470 Fragaria x ananassa HOM05D004944 ORTHO05D005989 9.4e-204 714.1 725 53.1
Aqoxy1G00293 Aquilegia oxysepala HOM05D004944 ORTHO05D005989 8.0e-203 711.1 667 56.8
Nn7g36468 Nelumbo nucifera HOM05D004944 ORTHO05D005989 1.0e-202 710.7 674 58.2
HanXRQChr05g0145061 Helianthus annuus HOM05D004944 ORTHO05D005989 3.0e-202 709.1 656 57.3
Cfa010848 Carpinus fangiana HOM05D004944 ORTHO05D005989 3.8e-197 692.2 603 61.0
Rhsim07G0062200 Rhododendron simsii HOM05D004944 ORTHO05D005989 2.8e-195 686.0 833 47.8
AL7G21230 Arabidopsis lyrata HOM05D004944 ORTHO05D005989 1.0e-194 684.1 670 54.9
Lsat_1_v5_gn_9_47141 Lactuca sativa HOM05D004944 ORTHO05D005989 6.8e-194 681.4 637 56.0
AT4G30870 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 9.2e-191 671.0 670 54.2
BraA09t38244Z Brassica rapa HOM05D004944 ORTHO05D005989 2.0e-190 669.8 653 55.7
Thhalv10024629m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 4.5e-190 668.7 671 54.7
Nitab4.5_0006307g0060 Nicotiana tabacum HOM05D004944 ORTHO05D005989 7.8e-190 667.9 590 59.2
A09p26720 Brassica napus HOM05D004944 ORTHO05D005989 2.3e-189 666.4 653 55.4
Aa31LG2G19510 Aethionema arabicum HOM05D004944 ORTHO05D005989 5.0e-189 665.2 675 53.2
BcaC04g21249 Brassica carinata HOM05D004944 ORTHO05D005989 2.5e-188 662.9 655 55.3
C09p33850 Brassica napus HOM05D004944 ORTHO05D005989 2.5e-188 662.9 655 55.3
BolC9t56223H Brassica oleracea HOM05D004944 ORTHO05D005989 2.5e-188 662.9 655 55.3
BcaB01g01761 Brassica carinata HOM05D004944 ORTHO05D005989 9.5e-188 661.0 665 54.4
Sp6g04870 Schrenkiella parvula HOM05D004944 ORTHO05D005989 1.0e-186 657.5 668 53.7
Carub.0007s0968 Capsella rubella HOM05D004944 ORTHO05D005989 1.8e-186 656.8 657 53.7
Cpa.g.sc197.13 Carica papaya HOM05D004944 ORTHO05D005989 1.7e-184 650.2 646 54.5
CARHR238770 Cardamine hirsuta HOM05D004944 ORTHO05D005989 3.7e-184 649.0 661 53.9
AUR62026814 Chenopodium quinoa HOM05D004944 ORTHO05D005989 1.2e-182 644.0 652 53.4
DCAR_009210 Daucus carota HOM05D004944 ORTHO05D005989 3.5e-182 642.5 644 55.0
Phvul.005G033000 Phaseolus vulgaris HOM05D004944 ORTHO05D005989 8.6e-181 637.9 650 54.6
PSO782G0837 Papaver somniferum HOM05D004944 ORTHO05D005989 9.5e-180 634.4 659 53.4
ECA232G0518 Erigeron canadensis HOM05D004944 ORTHO05D005989 7.5e-177 624.8 587 55.9
PSO339G0509 Papaver somniferum HOM05D004944 ORTHO05D005989 6.4e-176 621.7 641 52.7
Nitab4.5_0000316g0180 Nicotiana tabacum HOM05D004944 ORTHO05D005989 9.2e-175 617.8 558 58.2
MBI17_g24522_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 4.6e-174 615.5 607 55.4
PSO384G2132 Papaver somniferum HOM05D004944 ORTHO05D005989 7.3e-172 608.2 647 52.6
Hund15708 Selenicereus undatus HOM05D004944 ORTHO05D005989 8.1e-171 604.7 641 52.6
MD07G1077800 Malus domestica HOM05D004944 ORTHO05D005989 5.2e-170 602.1 569 56.8
HPP92_001459 Vanilla planifolia HOM05D004944 ORTHO05D005989 6.4e-168 595.1 656 52.1
PSO135G0630 Papaver somniferum HOM05D004944 ORTHO05D005989 7.8e-166 588.2 649 50.7
Carub.0007s3598 Capsella rubella HOM05D004944 ORTHO05D005989 8.1e-163 578.2 637 51.6
Manes.04G164000 Manihot esculenta HOM05D004944 ORTHO05D005989 4.0e-162 575.9 518 59.7
AUR62037239 Chenopodium quinoa HOM05D004944 ORTHO05D005989 2.7e-158 563.1 645 49.3
RcHm_v2.0_Chr3g0488831 Rosa chinensis HOM05D004944 ORTHO05D005989 3.0e-157 559.7 557 55.3
CDE01G0132 Ceratophyllum demersum HOM05D004944 ORTHO05D005989 3.9e-157 559.3 617 50.4
Thhalv10024809m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 3.3e-156 556.2 652 49.4
Gohir.A13G013200 Gossypium hirsutum HOM05D004944 ORTHO05D005989 1.8e-154 550.4 479 59.7
SEGI_11905 Sequoiadendron giganteum HOM05D004944 ORTHO05D005989 4.4e-153 545.8 665 47.4
EL10Ac2g02867 Beta vulgaris HOM05D004944 ORTHO05D005989 1.6e-150 537.3 644 48.0
Prupe.7G020900 Prunus persica HOM05D004944 ORTHO05D005989 1.4e-146 524.2 572 51.0
Solyc01g068340.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 7.4e-140 501.9 503 52.7
Psat5g213680 Pisum sativum HOM05D004944 ORTHO05D005989 2.0e-129 467.2 448 55.6
Pp3c16_12330 Physcomitrium patens HOM05D004944 ORTHO05D005989 2.2e-123 447.2 660 41.4
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 1.4e-122 444.5 653 40.7
AT5G39770 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 9.4e-119 431.8 626 44.4
AagrBONN_evm.TU.Sc2ySwM_228.3522 Anthoceros agrestis HOM05D004944 ORTHO05D005989 6.1e-118 429.1 652 39.1
Mapoly0005s0161 Marchantia polymorpha HOM05D004944 ORTHO05D005989 3.4e-113 413.3 664 38.6
unitig_744.g24021 Utricularia gibba HOM05D004944 ORTHO05D005989 4.5e-113 412.9 757 37.9
Os01g0948100 Oryza sativa ssp. japonica HOM05D004944 ORTHO05D005989 6.5e-112 409.1 544 46.0
Sc10g0004230 Simmondsia chinensis HOM05D004944 ORTHO05D005989 5.7e-100 369.4 447 46.5
MBI17_g33308_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 7.5e-92 342.4 222 75.2
Sc10g0004240 Simmondsia chinensis HOM05D004944 ORTHO05D005989 3.1e-90 337.0 226 70.8
Zm00001eb141330 Zea mays HOM05D004944 ORTHO05D005989 4.5e-89 333.2 495 41.8
Peaxi162Scf00309g00015 Petunia axillaris HOM05D004944 ORTHO05D005989 5.9e-89 332.8 541 38.4
vmacro13722 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 2.2e-88 330.9 388 48.2
Ca_04546_v3 Cicer arietinum L. HOM05D004944 ORTHO05D005989 1.7e-83 314.7 404 46.3
Zm00001eb141350 Zea mays HOM05D004944 ORTHO05D005989 7.2e-79 299.3 396 44.9
FAN10G4268 Fragaria x ananassa HOM05D004944 ORTHO05D005989 4.4e-76 290.0 272 55.9
CBR_g44528 Chara braunii HOM05D004944 ORTHO05D005989 7.0e-74 282.7 907 26.6
Solyc01g068350.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 1.5e-63 248.4 170 70.6
ATR0721G036 Amborella trichopoda HOM05D004944 ORTHO05D005989 2.3e-61 241.1 169 71.6
Peaxi162Scf00309g00016 Petunia axillaris HOM05D004944 ORTHO05D005989 1.3e-59 235.3 163 72.4
CSS0031841 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 3.2e-58 230.7 184 63.6
Lj9A645G78 Lonicera japonica HOM05D004944 ORTHO05D005989 2.1e-57 228.0 307 45.6
vmacro13724 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 8.1e-54 216.1 135 78.5
CSS0047173 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 1.2e-52 212.2 145 73.1
Lj9C645T11 Lonicera japonica HOM05D004944 ORTHO05D005989 1.2e-46 192.2 165 61.8
Prupe.2G032400 Prunus persica HOM05D004944 ORTHO05D005989 1.6e-46 191.8 174 59.8
AUR62002442 Chenopodium quinoa HOM05D004944 ORTHO05D005989 4.7e-46 190.3 171 55.0
ATR0721G017 Amborella trichopoda HOM05D004944 ORTHO05D005989 1.4e-45 188.7 357 37.0
BcaNung04417 Brassica carinata HOM05D000343 ORTHO05D003187 4.9e-43 180.3 133 63.9
HPP92_001442 Vanilla planifolia HOM05D004944 ORTHO05D005989 2.4e-42 177.9 142 62.7
FAN01G1245 Fragaria x ananassa HOM05D004944 ORTHO05D005989 7.1e-42 176.4 151 61.6
vmacro13723 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 1.2e-36 159.1 105 71.4
Sp5g22360 Schrenkiella parvula HOM05D004944 ORTHO05D005989 3.8e-35 154.1 139 55.4
CSS0009317 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 4.9e-35 153.7 145 55.2
Lj9A645G77 Lonicera japonica HOM05D004944 ORTHO05D005989 1.0e-32 146.0 122 58.2
MCO01G407 Micromonas commoda HOM05D004944 ORTHO05D005989 4.3e-31 140.6 653 25.1
SHI03969 Sapria himalayana HOM05D004944 ORTHO05D005989 7.3e-31 139.8 163 47.9
PRCOL_00004679 Prasinoderma coloniale HOM05D004944 ORTHO05D005989 1.1e-29 136.0 267 35.2
Prupe.2G099800 Prunus persica HOM05D004944 ORTHO05D005989 5.8e-28 130.2 262 35.1
Psat5g213600 Pisum sativum HOM05D004944 ORTHO05D005989 2.7e-25 121.3 147 48.3
Haze_26725 Corylus avellana HOM05D004944 ORTHO05D005989 6.7e-24 116.7 376 27.9
CSS0024385 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 1.1e-23 115.9 91 64.8
Oeu006103.1 Olea europaea HOM05D004944 ORTHO05D005989 4.3e-23 114.0 143 46.9
SHI03974 Sapria himalayana HOM05D004944 ORTHO05D005989 9.0e-21 106.3 144 45.8
RcHm_v2.0_Chr4g0391951 Rosa chinensis HOM05D004944 ORTHO05D005989 7.6e-20 103.2 103 52.4
Cre12.g555050 Chlamydomonas reinhardtii HOM05D004944 ORTHO05D005989 1.4e-18 99.0 171 36.8
Lj9A645G79 Lonicera japonica HOM05D004944 ORTHO05D005989 5.5e-18 97.1 55 78.2
SHI03976 Sapria himalayana HOM05D004944 ORTHO05D005989 7.9e-17 93.2 55 70.9
Peaxi162Scf00309g00011 Petunia axillaris HOM05D004944 ORTHO05D005989 3.3e-15 87.8 53 73.6
Lalb_Chr04g0263911 Lupinus albus HOM05D004944 ORTHO05D005989 5.9e-12 77.0 61 55.7
SHI03965 Sapria himalayana HOM05D004944 ORTHO05D005989 7.2e-10 70.1 69 49.3
SHI03973 Sapria himalayana HOM05D004944 ORTHO05D005989 6.3e-06 57.0 79 44.3


User provided reference genes

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