Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C008801.2 Cucumis melo HOM05D004151 ORTHO05D004775 3.8e-68 261.9 167 100.0
CsaV3_4G013280 Cucumis sativus L. HOM05D004151 ORTHO05D004775 4.7e-66 255.0 167 91.0
ClCG04G005310 Citrullus lanatus HOM05D004151 ORTHO05D004775 4.4e-64 248.4 170 96.5
Sed0025621 Sechium edule HOM05D004151 ORTHO05D004775 6.2e-58 228.0 169 82.2
PSO384G0229 Papaver somniferum HOM05D004151 ORTHO05D004775 3.4e-56 222.2 148 90.5
Gohir.D11G310400 Gossypium hirsutum HOM05D004151 ORTHO05D004775 4.4e-56 221.9 141 93.6
Gorai.007G343400 Gossypium raimondii HOM05D004151 ORTHO05D004775 4.4e-56 221.9 141 93.6
Lalb_Chr14g0364491 Lupinus albus HOM05D004151 ORTHO05D004775 4.4e-56 221.9 167 83.2
Gohir.A08G213200 Gossypium hirsutum HOM05D004151 ORTHO05D004775 5.8e-56 221.5 141 93.6
Gorai.004G244500 Gossypium raimondii HOM05D004151 ORTHO05D004775 5.8e-56 221.5 141 93.6
Gohir.A11G296500 Gossypium hirsutum HOM05D004151 ORTHO05D004775 1.3e-55 220.3 141 92.9
Gohir.D08G230300 Gossypium hirsutum HOM05D004151 ORTHO05D004775 2.2e-55 219.5 141 92.9
PGR142G1491 Punica granatum HOM05D004151 ORTHO05D004775 2.9e-55 219.2 141 92.9
Duzib106G1401 Durio zibethinus HOM05D004151 ORTHO05D004775 3.7e-55 218.8 169 85.8
Sed0023399 Sechium edule HOM05D004151 ORTHO05D004775 3.7e-55 218.8 150 92.0
Thecc.05G294500 Theobroma cacao HOM05D004151 ORTHO05D004775 4.9e-55 218.4 169 87.6
Ah.06g191800 Amaranthus hybridus HOM05D004151 ORTHO05D004775 6.4e-55 218.0 150 86.0
Hma1.2p1_0134F.1_g061640 Hydrangea macrophylla HOM05D004151 ORTHO05D004775 1.1e-54 217.2 159 86.2
Manes.08G144000 Manihot esculenta HOM05D004151 ORTHO05D004775 1.1e-54 217.2 169 87.6
Nn7g35851 Nelumbo nucifera HOM05D004151 ORTHO05D004775 1.4e-54 216.9 147 87.8
HPP92_021240 Vanilla planifolia HOM05D004151 ORTHO05D004775 1.4e-54 216.9 150 87.3
Dinv37014 Davidia involucrata HOM05D004151 ORTHO05D004775 1.9e-54 216.5 172 82.6
TWI32G1207 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 1.9e-54 216.5 172 86.0
Glyma.16G041400 Glycine max HOM05D004151 ORTHO05D004775 2.4e-54 216.1 169 83.4
RcHm_v2.0_Chr3g0490211 Rosa chinensis HOM05D004151 ORTHO05D004775 2.4e-54 216.1 165 81.2
Sabra13G0051900 Salix brachista HOM05D004151 ORTHO05D004775 2.4e-54 216.1 153 86.3
Lalb_Chr22g0359191 Lupinus albus HOM05D004151 ORTHO05D004775 4.1e-54 215.3 173 82.1
MD05G1045500 Malus domestica HOM05D004151 ORTHO05D004775 5.4e-54 214.9 150 80.0
SGA_v2.0_scaffold274G46513 Striga asiatica HOM05D004151 ORTHO05D004775 5.4e-54 214.9 160 86.9
TAR369G0512 Trochodendron aralioides HOM05D004151 ORTHO05D004775 5.4e-54 214.9 154 89.0
FvH4_1g30320 Fragaria vesca HOM05D004151 ORTHO05D004775 7.0e-54 214.5 167 78.4
FAN19G1796 Fragaria x ananassa HOM05D004151 ORTHO05D004775 7.0e-54 214.5 167 80.2
FAN26G2823 Fragaria x ananassa HOM05D004151 ORTHO05D004775 7.0e-54 214.5 167 80.2
Nitab4.5_0009048g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 7.0e-54 214.5 174 82.2
PSO339G5713 Papaver somniferum HOM05D004151 ORTHO05D004775 7.0e-54 214.5 140 92.1
THA.LOC104827273 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 7.0e-54 214.5 169 85.8
TPR.G5895 Trifolium pratense HOM05D004151 ORTHO05D004775 7.0e-54 214.5 151 90.1
Ah.13g075350 Amaranthus hybridus HOM05D004151 ORTHO05D004775 1.2e-53 213.8 153 85.6
Cc06_g22960 Coffea canephora HOM05D004151 ORTHO05D004775 1.2e-53 213.8 145 84.8
Glyma.19G110900 Glycine max HOM05D004151 ORTHO05D004775 2.0e-53 213.0 128 89.8
COL.COLO4_13597 Corchorus olitorius HOM05D004151 ORTHO05D004775 2.7e-53 212.6 142 90.8
Nitab4.5_0007542g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 2.7e-53 212.6 153 79.7
FAN23G0170 Fragaria x ananassa HOM05D004151 ORTHO05D004775 3.5e-53 212.2 167 79.6
Manes.09G141400 Manihot esculenta HOM05D004151 ORTHO05D004775 3.5e-53 212.2 169 85.2
GSVIVG01033401001 Vitis vinifera HOM05D004151 ORTHO05D004775 3.5e-53 212.2 170 78.8
Duzib177G0709 Durio zibethinus HOM05D004151 ORTHO05D004775 4.6e-53 211.8 171 86.5
arahy.Tifrunner.gnm1.ann1.JDMG7B Arachis hypogaea HOM05D004151 ORTHO05D004775 6.0e-53 211.5 171 88.3
arahy.Tifrunner.gnm1.ann1.PLSY77 Arachis hypogaea HOM05D004151 ORTHO05D004775 6.0e-53 211.5 171 88.3
CDE06G0359 Ceratophyllum demersum HOM05D004151 ORTHO05D004775 6.0e-53 211.5 149 81.9
THA.LOC104802867 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 6.0e-53 211.5 149 88.6
MSTRG.19934 Avicennia marina HOM05D004151 ORTHO05D004775 7.8e-53 211.1 151 83.4
CANSAT78G0749 Cannabis sativa HOM05D004151 ORTHO05D004775 7.8e-53 211.1 178 82.0
Sp3g02890 Schrenkiella parvula HOM05D004151 ORTHO05D004775 7.8e-53 211.1 150 86.0
Solyc10g078540.3 Solanum lycopersicum HOM05D004151 ORTHO05D004775 7.8e-53 211.1 153 82.4
Sopen10g029190 Solanum pennellii HOM05D004151 ORTHO05D004775 7.8e-53 211.1 153 82.4
TWI34G0161 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 1.0e-52 210.7 179 78.8
Atru.chr5.2062 Acer truncatum HOM05D004151 ORTHO05D004775 1.3e-52 210.3 169 79.9
Aa31LG11G11430 Aethionema arabicum HOM05D004151 ORTHO05D004775 1.3e-52 210.3 170 85.9
Potri.013G058400 Populus trichocarpa HOM05D004151 ORTHO05D004775 1.3e-52 210.3 160 82.5
Prupe.8G064800 Prunus persica HOM05D004151 ORTHO05D004775 1.3e-52 210.3 151 85.4
AUR62032690 Chenopodium quinoa HOM05D004151 ORTHO05D004775 1.7e-52 209.9 145 88.3
Lj1g0021266 Lotus japonicus HOM05D004151 ORTHO05D004775 1.7e-52 209.9 176 80.1
QL07p019530 Quercus lobata HOM05D004151 ORTHO05D004775 1.7e-52 209.9 176 83.0
MD00G1189600 Malus domestica HOM05D004151 ORTHO05D004775 2.3e-52 209.5 150 76.0
PSO063G0165 Papaver somniferum HOM05D004151 ORTHO05D004775 2.3e-52 209.5 151 84.8
PGSC0003DMG400008366 Solanum tuberosum HOM05D004151 ORTHO05D004775 2.3e-52 209.5 153 81.7
CiPaw.09G001900 Carya illinoinensis HOM05D004151 ORTHO05D004775 3.0e-52 209.1 172 84.9
Medtr7g085640 Medicago truncatula HOM05D004151 ORTHO05D004775 3.9e-52 208.8 150 86.7
Psat0s1971g0280 Pisum sativum HOM05D004151 ORTHO05D004775 3.9e-52 208.8 145 90.3
CARHR194880 Cardamine hirsuta HOM05D004151 ORTHO05D004775 5.0e-52 208.4 164 80.5
Dinv14579 Davidia involucrata HOM05D004151 ORTHO05D004775 5.0e-52 208.4 176 80.7
FAN28G2413 Fragaria x ananassa HOM05D004151 ORTHO05D004775 5.0e-52 208.4 139 84.9
EL10Ac3g06820 Beta vulgaris HOM05D004151 ORTHO05D004775 6.6e-52 208.0 146 86.3
SEGI_32651 Sequoiadendron giganteum HOM05D004151 ORTHO05D004775 1.1e-51 207.2 148 80.4
Atru.chr5.2060 Acer truncatum HOM05D004151 ORTHO05D004775 1.9e-51 206.5 169 79.3
BolC1t05799H Brassica oleracea HOM05D004151 ORTHO05D004775 1.9e-51 206.5 167 79.0
Haze_19418 Corylus avellana HOM05D004151 ORTHO05D004775 1.9e-51 206.5 152 80.9
Haze_19447 Corylus avellana HOM05D004151 ORTHO05D004775 1.9e-51 206.5 152 80.9
Peaxi162Scf00003g04832 Petunia axillaris HOM05D004151 ORTHO05D004775 1.9e-51 206.5 168 70.2
Cfa016441 Carpinus fangiana HOM05D004151 ORTHO05D004775 2.5e-51 206.1 173 78.0
Oeu059999.1 Olea europaea HOM05D004151 ORTHO05D004775 2.5e-51 206.1 175 76.0
PSO782G4796 Papaver somniferum HOM05D004151 ORTHO05D004775 2.5e-51 206.1 149 79.9
Aa31LG5G14500 Aethionema arabicum HOM05D004151 ORTHO05D004775 3.3e-51 205.7 169 85.8
Thhalv10014755m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 3.3e-51 205.7 148 76.4
Os11g0579800 Oryza sativa ssp. japonica HOM05D004151 ORTHO05D004775 3.3e-51 205.7 152 79.6
Sp6g26140 Schrenkiella parvula HOM05D004151 ORTHO05D004775 3.3e-51 205.7 148 83.8
A01p41270 Brassica napus HOM05D004151 ORTHO05D004775 4.3e-51 205.3 168 80.4
BNapus_Darmor_BZH_scaffold_78p00440 Brassica napus HOM05D004151 ORTHO05D004775 4.3e-51 205.3 168 80.4
VMungo1383G2477 Vigna mungo HOM05D004151 ORTHO05D004775 5.6e-51 204.9 150 86.7
Oeu049600.1 Olea europaea HOM05D004151 ORTHO05D004775 7.3e-51 204.5 169 85.8
Potri.019G034900 Populus trichocarpa HOM05D004151 ORTHO05D004775 7.3e-51 204.5 156 84.6
Thhalv10021561m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 9.5e-51 204.1 151 86.1
SalBow5G4201 Salvia bowleyana HOM05D004151 ORTHO05D004775 9.5e-51 204.1 141 82.3
Sc25g0004980 Simmondsia chinensis HOM05D004151 ORTHO05D004775 1.2e-50 203.8 151 77.5
BcaC03g13582 Brassica carinata HOM05D004151 ORTHO05D004775 1.6e-50 203.4 166 77.1
BolC2t06882H Brassica oleracea HOM05D004151 ORTHO05D004775 1.6e-50 203.4 166 77.1
Phvul.001G110400 Phaseolus vulgaris HOM05D004151 ORTHO05D004775 1.6e-50 203.4 154 81.8
ATR0697G007 Amborella trichopoda HOM05D004151 ORTHO05D004775 2.1e-50 203.0 140 90.0
Carub.0006s1646 Capsella rubella HOM05D004151 ORTHO05D004775 2.8e-50 202.6 148 83.1
BraA01t04550Z Brassica rapa HOM05D004151 ORTHO05D004775 3.6e-50 202.2 168 79.2
Aqoxy1G00486 Aquilegia oxysepala HOM05D004151 ORTHO05D004775 4.7e-50 201.8 171 82.5
BolC3t13499H Brassica oleracea HOM05D004151 ORTHO05D004775 6.2e-50 201.4 172 78.5
Zm00001eb200450 Zea mays HOM05D004151 ORTHO05D004775 6.2e-50 201.4 143 86.7
Migut.J01888 Erythranthe guttata HOM05D004151 ORTHO05D004775 1.1e-49 200.7 186 73.1
C02p09730 Brassica napus HOM05D004151 ORTHO05D004775 1.8e-49 199.9 166 76.5
Sabra19G0042500 Salix brachista HOM05D004151 ORTHO05D004775 1.8e-49 199.9 139 90.6
Sabra19G0044800 Salix brachista HOM05D004151 ORTHO05D004775 1.8e-49 199.9 139 90.6
AL6G29380 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 2.3e-49 199.5 148 76.4
HanXRQChr07g0204461 Helianthus annuus HOM05D004151 ORTHO05D004775 2.3e-49 199.5 141 86.5
AL3G13810 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 4.0e-49 198.7 176 83.0
A03p08690 Brassica napus HOM05D004151 ORTHO05D004775 4.0e-49 198.7 174 77.0
BcaB01g05179 Brassica carinata HOM05D004151 ORTHO05D004775 5.2e-49 198.4 172 77.9
C03p10140 Brassica napus HOM05D004151 ORTHO05D004775 5.2e-49 198.4 172 77.9
BraA03t10192Z Brassica rapa HOM05D004151 ORTHO05D004775 5.2e-49 198.4 172 77.9
CARHR078040 Cardamine hirsuta HOM05D004151 ORTHO05D004775 5.2e-49 198.4 168 67.9
BcaNung05743 Brassica carinata HOM05D004151 ORTHO05D004775 6.8e-49 198.0 169 76.9
BcaNung05745 Brassica carinata HOM05D004151 ORTHO05D004775 8.9e-49 197.6 162 79.0
Hund24835 Selenicereus undatus HOM05D004151 ORTHO05D004775 8.9e-49 197.6 149 81.9
BcaB05g23300 Brassica carinata HOM05D004151 ORTHO05D004775 1.5e-48 196.8 143 82.5
AT3G03920 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 2.6e-48 196.1 157 82.8
AT5G18180 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 2.6e-48 196.1 148 75.7
unitig_21.g20195 Utricularia gibba HOM05D004151 ORTHO05D004775 2.6e-48 196.1 169 73.4
Lsat_1_v5_gn_8_145841 Lactuca sativa HOM05D004151 ORTHO05D004775 7.5e-48 194.5 153 82.4
A02p04770 Brassica napus HOM05D004151 ORTHO05D004775 9.9e-48 194.1 166 75.3
Actinidia22083 Actinidia chinensis HOM05D004151 ORTHO05D004775 2.2e-47 193.0 143 86.0
CSS0045523 Camellia sinensis var. sinensis HOM05D004151 ORTHO05D004775 4.9e-47 191.8 179 76.5
Rhsim04G0087500 Rhododendron simsii HOM05D004151 ORTHO05D004775 4.9e-47 191.8 148 82.4
ECA233G5487 Erigeron canadensis HOM05D004151 ORTHO05D004775 6.4e-47 191.4 155 76.8
HanXRQChr08g0216931 Helianthus annuus HOM05D004151 ORTHO05D004775 8.3e-47 191.0 181 70.2
Lsat_1_v5_gn_8_24760 Lactuca sativa HOM05D004151 ORTHO05D004775 8.3e-47 191.0 174 81.6
vmacro09141 Vaccinium macrocarpon HOM05D004151 ORTHO05D004775 8.3e-47 191.0 159 77.4
BraA02t05436Z Brassica rapa HOM05D004151 ORTHO05D004775 1.1e-46 190.7 168 70.8
Carub.0003s0316 Capsella rubella HOM05D004151 ORTHO05D004775 1.9e-46 189.9 155 77.4
COL.COLO4_13598 Corchorus olitorius HOM05D004151 ORTHO05D004775 1.9e-46 189.9 148 81.8
Mapoly0086s0024 Marchantia polymorpha HOM05D004151 ORTHO05D004775 9.2e-46 187.6 147 78.9
Peaxi162Scf00076g01048 Petunia axillaris HOM05D004151 ORTHO05D004775 1.6e-45 186.8 152 77.0
Zm00001eb114360 Zea mays HOM05D004151 ORTHO05D004775 2.1e-45 186.4 205 68.8
AagrBONN_evm.TU.Sc2ySwM_362.2901 Anthoceros agrestis HOM05D004151 ORTHO05D004775 3.5e-45 185.7 151 73.5
Pp3c25_15020 Physcomitrium patens HOM05D004151 ORTHO05D004775 6.0e-45 184.9 148 77.7
Cpa.g.sc51.114 Carica papaya HOM05D004151 ORTHO05D004775 7.8e-45 184.5 91 94.5
Pp3c5_28430 Physcomitrium patens HOM05D004151 ORTHO05D004775 1.3e-44 183.7 149 76.5
CBR_g48747 Chara braunii HOM05D004151 ORTHO05D004775 1.5e-43 180.3 137 73.7
CAN.G960.49 Capsicum annuum HOM05D004151 ORTHO05D004775 2.1e-42 176.4 94 90.4
Nitab4.5_0002769g0090 Nicotiana tabacum HOM05D004151 ORTHO05D004775 1.1e-41 174.1 166 70.5
Ca_08267_v3 Cicer arietinum L. HOM05D004151 ORTHO05D004775 1.4e-41 173.7 86 94.2
Nitab4.5_0004844g0050 Nicotiana tabacum HOM05D004151 ORTHO05D004775 1.8e-41 173.3 92 88.0
Cre13.g567850 Chlamydomonas reinhardtii HOM05D004151 ORTHO05D004775 1.5e-40 170.2 173 68.2
Hund19236 Selenicereus undatus HOM05D004151 ORTHO05D004775 8.4e-39 164.5 116 70.7
MBI11_g31283_MAGBIO Magnolia biondii HOM05D004151 ORTHO05D004775 2.7e-37 159.5 81 88.9
BolC2t11912H Brassica oleracea HOM05D004151 ORTHO05D004775 1.1e-35 154.1 129 65.1
SMO347G0554 Selaginella moellendorffii HOM05D004151 ORTHO05D004775 5.6e-35 151.8 169 70.4
MCO13G219 Micromonas commoda HOM05D004151 ORTHO05D004775 2.1e-34 149.8 94 69.1
C09p58800 Brassica napus HOM05D004151 ORTHO05D004775 2.2e-31 139.8 80 80.0
BraA10t42874Z Brassica rapa HOM05D004151 ORTHO05D004775 8.4e-31 137.9 106 68.9
unitig_744.g24550 Utricularia gibba HOM05D004151 ORTHO05D004775 1.9e-27 126.7 60 98.3
PRCOL_00005119 Prasinoderma coloniale HOM05D005848 ORTHO05D007532 1.6e-26 123.6 76 69.7
C02p58510 Brassica napus HOM05D004151 ORTHO05D004775 4.0e-25 119.0 95 63.2
Actinidia30553 Actinidia chinensis HOM05D004151 ORTHO05D004775 1.3e-23 114.0 57 94.7
Haze_27090 Corylus avellana HOM05D000590 ORTHO05D004775 1.2e-21 107.5 94 52.1
HanXRQChr05g0143841 Helianthus annuus HOM05D004151 ORTHO05D004775 7.9e-21 104.8 144 50.7
Zm00001eb274230 Zea mays HOM05D004151 ORTHO05D004775 7.4e-19 98.2 49 87.8
Oeu035726.1 Olea europaea HOM05D004151 ORTHO05D004775 4.8e-18 95.5 105 53.3
Oeu035720.1 Olea europaea HOM05D004151 ORTHO05D004775 1.8e-17 93.6 108 52.8
Atru.chr10.1764 Acer truncatum HOM05D004151 ORTHO05D004775 7.1e-14 81.6 48 83.3
Atru.chr5.2304 Acer truncatum HOM05D004151 ORTHO05D004775 7.1e-14 81.6 48 83.3
Atru.chr6.7 Acer truncatum HOM05D004151 ORTHO05D004775 2.7e-13 79.7 48 81.2
Atru.chr13.534 Acer truncatum HOM05D004151 ORTHO05D004775 6.0e-13 78.6 48 81.2
Atru.chr2.3197 Acer truncatum HOM05D004151 ORTHO05D004775 6.0e-13 78.6 48 81.2
Atru.chr4.2011 Acer truncatum HOM05D004151 ORTHO05D004775 6.0e-13 78.6 48 81.2
BcaB08g36698 Brassica carinata HOM05D004151 ORTHO05D004775 5.6e-11 72.0 46 80.4
BolC9t58722H Brassica oleracea HOM05D004151 ORTHO05D004775 6.9e-09 65.1 142 47.9
ECA246G0128 Erigeron canadensis HOM05D001659 ORTHO05D001659 2.2e-07 60.1 35 74.3


User provided reference genes

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