Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C008717.2 Cucumis melo HOM05D003800 ORTHO05D004549 1.5e-161 572.8 287 100.0
CsaV3_2G009720 Cucumis sativus L. HOM05D003800 ORTHO05D004549 7.7e-158 560.5 287 97.2
ClCG11G010680 Citrullus lanatus HOM05D003800 ORTHO05D004549 2.3e-154 548.9 287 94.8
Sed0012073 Sechium edule HOM05D003800 ORTHO05D004549 7.8e-134 480.7 287 84.7
VMungo1383G1495 Vigna mungo HOM05D003800 ORTHO05D004549 1.1e-119 433.7 296 74.7
Glyma.18G242300 Glycine max HOM05D003800 ORTHO05D004549 5.4e-119 431.4 296 75.0
Nn7g38203 Nelumbo nucifera HOM05D003800 ORTHO05D004549 7.0e-119 431.0 258 80.2
Lj1g0015068 Lotus japonicus HOM05D003800 ORTHO05D004549 1.2e-118 430.3 297 72.4
Phvul.008G054025 Phaseolus vulgaris HOM05D003800 ORTHO05D004549 1.2e-118 430.3 296 74.0
TPR.G31802 Trifolium pratense HOM05D003800 ORTHO05D004549 3.5e-118 428.7 268 78.4
PGR119G0297 Punica granatum HOM05D003800 ORTHO05D004549 6.0e-118 427.9 281 75.8
Peaxi162Scf00048g00815 Petunia axillaris HOM05D003800 ORTHO05D004549 7.8e-118 427.6 262 78.2
Ciclev10012312m.g Citrus clementina HOM05D003800 ORTHO05D004549 1.0e-117 427.2 286 75.5
Potri.019G053700 Populus trichocarpa HOM05D003800 ORTHO05D004549 1.7e-117 426.4 277 75.1
PGSC0003DMG400007268 Solanum tuberosum HOM05D003800 ORTHO05D004549 3.0e-117 425.6 243 81.5
CSS0026150 Camellia sinensis var. sinensis HOM05D003800 ORTHO05D004549 5.1e-117 424.9 289 73.7
Dinv10508 Davidia involucrata HOM05D003800 ORTHO05D004549 8.6e-117 424.1 278 75.2
QL08p020626 Quercus lobata HOM05D003800 ORTHO05D004549 1.5e-116 423.3 262 77.9
Nitab4.5_0000971g0070 Nicotiana tabacum HOM05D003800 ORTHO05D004549 1.9e-116 422.9 230 85.7
Migut.F01872 Erythranthe guttata HOM05D003800 ORTHO05D004549 3.3e-116 422.2 285 73.0
Sopen04g025300 Solanum pennellii HOM05D003800 ORTHO05D004549 4.3e-116 421.8 243 80.7
TWI75G1224 Tripterygium wilfordii HOM05D003800 ORTHO05D004549 4.3e-116 421.8 254 77.6
Dinv29095 Davidia involucrata HOM05D003800 ORTHO05D004549 5.6e-116 421.4 245 80.0
Glyma.09G250200 Glycine max HOM05D003800 ORTHO05D004549 5.6e-116 421.4 283 74.2
MD04G1245100 Malus domestica HOM05D003800 ORTHO05D004549 5.6e-116 421.4 291 73.2
ClCG03G010650 Citrullus lanatus HOM05D003800 ORTHO05D004549 7.3e-116 421.0 236 83.5
Cfa006258 Carpinus fangiana HOM05D003800 ORTHO05D004549 9.5e-116 420.6 299 71.2
Oeu023172.1 Olea europaea HOM05D003800 ORTHO05D004549 9.5e-116 420.6 233 83.3
Prupe.6G361700 Prunus persica HOM05D003800 ORTHO05D004549 9.5e-116 420.6 277 75.1
Solyc05g055760.3 Solanum lycopersicum HOM05D003800 ORTHO05D004549 9.5e-116 420.6 230 85.2
Sopen05g034170 Solanum pennellii HOM05D003800 ORTHO05D004549 9.5e-116 420.6 230 85.2
Actinidia06803 Actinidia chinensis HOM05D003800 ORTHO05D004549 1.6e-115 419.9 300 72.0
Psat3g138120 Pisum sativum HOM05D003800 ORTHO05D004549 1.6e-115 419.9 295 71.9
CiPaw.07G080800 Carya illinoinensis HOM05D003800 ORTHO05D004549 2.1e-115 419.5 235 82.1
Eucgr.H01393 Eucalyptus grandis HOM05D003800 ORTHO05D004549 2.1e-115 419.5 249 79.5
Rhsim09G0130100 Rhododendron simsii HOM05D003800 ORTHO05D004549 2.1e-115 419.5 268 76.1
Solyc04g056390.3 Solanum lycopersicum HOM05D003800 ORTHO05D004549 2.1e-115 419.5 243 79.8
AL3G12190 Arabidopsis lyrata HOM05D003800 ORTHO05D004549 2.8e-115 419.1 265 76.6
Cpa.g.sc1105.3 Carica papaya HOM05D003800 ORTHO05D004549 2.8e-115 419.1 235 82.1
Nitab4.5_0003099g0070 Nicotiana tabacum HOM05D003800 ORTHO05D004549 2.8e-115 419.1 277 76.2
CiPaw.08G114800 Carya illinoinensis HOM05D003800 ORTHO05D004549 3.6e-115 418.7 284 74.6
Lalb_Chr01g0020421 Lupinus albus HOM05D003800 ORTHO05D004549 3.6e-115 418.7 281 73.3
PGSC0003DMG400023359 Solanum tuberosum HOM05D003800 ORTHO05D004549 3.6e-115 418.7 228 85.1
Thecc.05G194400 Theobroma cacao HOM05D003800 ORTHO05D004549 3.6e-115 418.7 290 74.8
CAN.G694.23 Capsicum annuum HOM05D003800 ORTHO05D004549 4.7e-115 418.3 230 84.8
TAR365G0109 Trochodendron aralioides HOM05D003800 ORTHO05D004549 4.7e-115 418.3 271 75.3
Nitab4.5_0001435g0050 Nicotiana tabacum HOM05D003800 ORTHO05D004549 6.2e-115 417.9 291 71.8
MELO3C010053.2 Cucumis melo HOM05D003800 ORTHO05D004549 8.1e-115 417.5 236 82.6
Atru.chr12.1779 Acer truncatum HOM05D003800 ORTHO05D004549 1.1e-114 417.2 273 74.0
vmacro10405 Vaccinium macrocarpon HOM05D003800 ORTHO05D004549 1.1e-114 417.2 251 78.5
AT3G02780 Arabidopsis thaliana HOM05D003800 ORTHO05D004549 1.4e-114 416.8 269 74.3
CAN.G217.10 Capsicum annuum HOM05D003800 ORTHO05D004549 1.4e-114 416.8 240 80.4
Medtr7g080060 Medicago truncatula HOM05D003800 ORTHO05D004549 1.4e-114 416.8 277 72.6
CsaV3_1G044500 Cucumis sativus L. HOM05D003800 ORTHO05D004549 1.8e-114 416.4 236 83.1
MD12G1086800 Malus domestica HOM05D003800 ORTHO05D004549 1.8e-114 416.4 289 73.4
Gohir.A08G225900 Gossypium hirsutum HOM05D003800 ORTHO05D004549 2.3e-114 416.0 298 71.8
Cc09_g03670 Coffea canephora HOM05D003800 ORTHO05D004549 3.1e-114 415.6 236 82.2
Eucgr.A01783 Eucalyptus grandis HOM05D003800 ORTHO05D004549 3.1e-114 415.6 235 82.1
Gorai.004G262800 Gossypium raimondii HOM05D003800 ORTHO05D004549 3.1e-114 415.6 298 71.5
Sc09g0001450 Simmondsia chinensis HOM05D003800 ORTHO05D004549 3.1e-114 415.6 286 71.3
CAN.G694.24 Capsicum annuum HOM05D003800 ORTHO05D004549 5.2e-114 414.8 230 84.3
Lsat_1_v5_gn_2_17540 Lactuca sativa HOM05D003800 ORTHO05D004549 6.8e-114 414.5 281 71.2
MSTRG.329 Avicennia marina HOM05D003800 ORTHO05D004549 8.9e-114 414.1 243 80.2
Lalb_Chr06g0168491 Lupinus albus HOM05D003800 ORTHO05D004549 8.9e-114 414.1 233 81.5
HanXRQChr04g0095031 Helianthus annuus HOM05D003800 ORTHO05D004549 1.2e-113 413.7 243 79.8
DCAR_015080 Daucus carota HOM05D003800 ORTHO05D004549 2.0e-113 412.9 235 80.4
Lj1A574T25 Lonicera japonica HOM05D003800 ORTHO05D004549 2.0e-113 412.9 230 82.2
BcaC05g30508 Brassica carinata HOM05D003800 ORTHO05D004549 2.6e-113 412.5 249 77.9
C03p40290 Brassica napus HOM05D003800 ORTHO05D004549 2.6e-113 412.5 235 80.4
BolC3t16294H Brassica oleracea HOM05D003800 ORTHO05D004549 2.6e-113 412.5 235 80.4
Carub.0003s0188 Capsella rubella HOM05D003800 ORTHO05D004549 2.6e-113 412.5 275 72.0
RcHm_v2.0_Chr3g0447851 Rosa chinensis HOM05D003800 ORTHO05D004549 2.6e-113 412.5 279 74.6
SGA_v2.0_scaffold340G49303 Striga asiatica HOM05D003800 ORTHO05D004549 2.6e-113 412.5 287 71.1
PSO357G0181 Papaver somniferum HOM05D003800 ORTHO05D004549 3.4e-113 412.1 233 81.1
Manes.12G005500 Manihot esculenta HOM05D003800 ORTHO05D004549 4.4e-113 411.8 280 71.1
Sp3g01810 Schrenkiella parvula HOM05D003800 ORTHO05D004549 4.4e-113 411.8 238 79.4
A03p33110 Brassica napus HOM05D003800 ORTHO05D004549 5.8e-113 411.4 236 80.9
BraA03t12481Z Brassica rapa HOM05D003800 ORTHO05D004549 5.8e-113 411.4 249 77.1
GSVIVG01019089001 Vitis vinifera HOM05D003800 ORTHO05D004549 5.8e-113 411.4 227 84.1
CSS0014154 Camellia sinensis var. sinensis HOM05D003800 ORTHO05D004549 7.5e-113 411.0 228 82.9
Gohir.D08G246300 Gossypium hirsutum HOM05D003800 ORTHO05D004549 7.5e-113 411.0 298 70.8
FAN05G4594 Fragaria x ananassa HOM05D003800 ORTHO05D004549 9.9e-113 410.6 235 80.9
PGR031G1622 Punica granatum HOM05D003800 ORTHO05D004549 1.3e-112 410.2 290 71.0
TWI18G1194 Tripterygium wilfordii HOM05D003800 ORTHO05D004549 1.3e-112 410.2 294 70.1
Aqoxy2G04026 Aquilegia oxysepala HOM05D003800 ORTHO05D004549 1.7e-112 409.8 237 78.9
Actinidia38903 Actinidia chinensis HOM05D003800 ORTHO05D004549 2.9e-112 409.1 236 80.5
Peaxi162Scf00156g00114 Petunia axillaris HOM05D003800 ORTHO05D004549 2.9e-112 409.1 250 78.0
CARHR076790 Cardamine hirsuta HOM05D003800 ORTHO05D004549 3.7e-112 408.7 235 79.1
Actinidia03293 Actinidia chinensis HOM05D003800 ORTHO05D004549 4.9e-112 408.3 299 69.2
Os07g0546000 Oryza sativa ssp. japonica HOM05D003800 ORTHO05D004549 4.9e-112 408.3 234 80.8
FvH4_6g00470 Fragaria vesca HOM05D003800 ORTHO05D004549 6.4e-112 407.9 288 71.2
MSTRG.8210 Avicennia marina HOM05D003800 ORTHO05D004549 8.3e-112 407.5 266 74.1
AUR62000306 Chenopodium quinoa HOM05D003800 ORTHO05D004549 8.3e-112 407.5 228 81.1
FAN09G3800 Fragaria x ananassa HOM05D003800 ORTHO05D004549 8.3e-112 407.5 288 71.2
MBI07_g36332_MAGBIO Magnolia biondii HOM05D003800 ORTHO05D004549 8.3e-112 407.5 284 70.8
Migut.F02135 Erythranthe guttata HOM05D003800 ORTHO05D004549 1.1e-111 407.1 230 80.9
HanXRQChr09g0257801 Helianthus annuus HOM05D003800 ORTHO05D004549 1.1e-111 407.1 288 69.4
THA.LOC104802955 Tarenaya hassleriana HOM05D003800 ORTHO05D004549 1.1e-111 407.1 280 71.1
Ah.06g195450 Amaranthus hybridus HOM05D003800 ORTHO05D004549 1.4e-111 406.8 240 77.1
PSO017G2843 Papaver somniferum HOM05D003800 ORTHO05D004549 1.4e-111 406.8 283 71.0
PSO675G7217 Papaver somniferum HOM05D003800 ORTHO05D004549 1.4e-111 406.8 286 71.3
BcaC05g30511 Brassica carinata HOM05D003800 ORTHO05D004549 1.9e-111 406.4 263 75.3
C09p75900 Brassica napus HOM05D003800 ORTHO05D004549 1.9e-111 406.4 263 75.3
BolC5t35067H Brassica oleracea HOM05D003800 ORTHO05D004549 1.9e-111 406.4 263 75.3
Thhalv10020933m.g Eutrema salsugineum HOM05D003800 ORTHO05D004549 1.9e-111 406.4 283 70.3
AT5G16440 Arabidopsis thaliana HOM05D003800 ORTHO05D004549 2.4e-111 406.0 277 71.8
AUR62006651 Chenopodium quinoa HOM05D003800 ORTHO05D004549 2.4e-111 406.0 228 80.7
Ah.04g158990 Amaranthus hybridus HOM05D003800 ORTHO05D004549 4.1e-111 405.2 289 70.6
Duzib128G1178 Durio zibethinus HOM05D003800 ORTHO05D004549 5.4e-111 404.8 301 70.1
MSTRG.27390 Avicennia marina HOM05D003800 ORTHO05D004549 7.1e-111 404.4 287 69.0
Carub.0006s1463 Capsella rubella HOM05D003800 ORTHO05D004549 9.2e-111 404.1 263 73.8
A05p44340 Brassica napus HOM05D003800 ORTHO05D004549 1.2e-110 403.7 284 71.1
BraA06t23290Z Brassica rapa HOM05D003800 ORTHO05D004549 1.2e-110 403.7 284 71.1
Duzib177G0232 Durio zibethinus HOM05D003800 ORTHO05D004549 1.2e-110 403.7 296 70.3
THA.LOC104820922 Tarenaya hassleriana HOM05D003800 ORTHO05D004549 1.2e-110 403.7 270 73.0
Thhalv10014571m.g Eutrema salsugineum HOM05D003800 ORTHO05D004549 1.6e-110 403.3 228 80.3
Manes.13G005300 Manihot esculenta HOM05D003800 ORTHO05D004549 1.6e-110 403.3 273 72.2
Zm00001eb323510 Zea mays HOM05D003800 ORTHO05D004549 1.6e-110 403.3 228 80.3
ATR1145G078 Amborella trichopoda HOM05D003800 ORTHO05D004549 3.5e-110 402.1 288 69.1
AL6G27370 Arabidopsis lyrata HOM05D003800 ORTHO05D004549 4.6e-110 401.7 289 70.6
arahy.Tifrunner.gnm1.ann1.BW88YF Arachis hypogaea HOM05D003800 ORTHO05D004549 1.0e-109 400.6 264 73.9
EL10Ac4g09961 Beta vulgaris HOM05D003800 ORTHO05D004549 1.0e-109 400.6 285 70.5
BcaB04g21400 Brassica carinata HOM05D003800 ORTHO05D004549 1.3e-109 400.2 274 70.4
BolC3t13395H Brassica oleracea HOM05D003800 ORTHO05D004549 8.6e-109 397.5 242 76.0
Os05g0413400 Oryza sativa ssp. japonica HOM05D003800 ORTHO05D004549 8.6e-109 397.5 290 67.6
BNapus_Darmor_BZH_scaffold_99p00290 Brassica napus HOM05D003800 ORTHO05D004549 1.5e-108 396.7 268 71.3
CARHR196820 Cardamine hirsuta HOM05D003800 ORTHO05D004549 1.9e-108 396.4 286 70.3
Zm00001eb349410 Zea mays HOM05D003800 ORTHO05D004549 1.9e-108 396.4 251 72.9
BcaNung04309 Brassica carinata HOM05D003800 ORTHO05D004549 2.5e-108 396.0 275 70.9
BolC1t05871H Brassica oleracea HOM05D003800 ORTHO05D004549 2.5e-108 396.0 275 70.9
TAR636G3604 Trochodendron aralioides HOM05D003800 ORTHO05D004549 9.5e-108 394.0 250 75.2
Sabra19G0062900 Salix brachista HOM05D003800 ORTHO05D004549 1.6e-107 393.3 350 60.9
CDE05G0693 Ceratophyllum demersum HOM05D003800 ORTHO05D004549 3.6e-107 392.1 233 75.1
Aa31LG11G13220 Aethionema arabicum HOM05D003800 ORTHO05D004549 4.7e-107 391.7 233 74.7
BraA03t10104Z Brassica rapa HOM05D003800 ORTHO05D004549 4.7e-107 391.7 248 74.6
C03p08990 Brassica napus HOM05D003800 ORTHO05D004549 1.1e-106 390.6 274 69.7
SGA_v2.0_scaffold62G21505 Striga asiatica HOM05D003800 ORTHO05D004549 2.4e-106 389.4 308 63.6
CDE02G3521 Ceratophyllum demersum HOM05D003800 ORTHO05D004549 8.9e-106 387.5 273 69.6
Lsat_1_v5_gn_8_2340 Lactuca sativa HOM05D003800 ORTHO05D004549 8.9e-106 387.5 302 65.2
Aa31LG5G13250 Aethionema arabicum HOM05D003800 ORTHO05D004549 1.2e-105 387.1 280 70.0
ECA232G0651 Erigeron canadensis HOM05D003800 ORTHO05D004549 2.0e-105 386.3 302 65.6
Pp3c1_33430 Physcomitrium patens HOM05D003800 ORTHO05D004549 2.0e-105 386.3 238 76.9
SEGI_07465 Sequoiadendron giganteum HOM05D003800 ORTHO05D004549 4.4e-105 385.2 290 67.6
BraA01t04615Z Brassica rapa HOM05D003800 ORTHO05D004549 9.9e-105 384.0 268 70.1
PSO170G0032 Papaver somniferum HOM05D003800 ORTHO05D004549 1.3e-104 383.6 233 77.3
unitig_26.g8931 Utricularia gibba HOM05D005721 ORTHO05D006758 8.4e-104 380.9 283 66.8
FAN02G2831 Fragaria x ananassa HOM05D003800 ORTHO05D004549 4.2e-103 378.6 217 80.2
A03p07770 Brassica napus HOM05D003800 ORTHO05D004549 9.2e-103 377.5 248 73.0
Nitab4.5_0000083g0120 Nicotiana tabacum HOM05D003800 ORTHO05D004549 4.6e-102 375.2 304 65.1
SMO367G0306 Selaginella moellendorffii HOM05D003800 ORTHO05D004549 3.9e-101 372.1 227 76.7
CDE05G3592 Ceratophyllum demersum HOM05D003800 ORTHO05D004549 5.1e-101 371.7 219 77.2
unitig_61.g26276 Utricularia gibba HOM05D003800 ORTHO05D004549 8.7e-101 370.9 214 78.0
Mapoly0066s0080 Marchantia polymorpha HOM05D003800 ORTHO05D004549 1.5e-100 370.2 225 76.4
AagrBONN_evm.TU.Sc2ySwM_344.2844 Anthoceros agrestis HOM05D003800 ORTHO05D004549 1.2e-99 367.1 260 68.8
arahy.Tifrunner.gnm1.ann1.7Y2C76 Arachis hypogaea HOM05D003800 ORTHO05D004549 9.9e-97 357.5 284 66.2
ECA238G3407 Erigeron canadensis HOM05D003800 ORTHO05D004549 4.2e-95 352.1 196 83.7
Oeu046895.1 Olea europaea HOM05D003800 ORTHO05D004549 3.5e-94 349.0 193 83.4
Haze_04560 Corylus avellana HOM05D003800 ORTHO05D004549 2.3e-93 346.3 199 80.4
CBR_g48525 Chara braunii HOM05D003800 ORTHO05D004549 1.1e-92 344.0 220 69.5
MBI11_g44548_MAGBIO Magnolia biondii HOM05D003800 ORTHO05D004549 8.1e-91 337.8 193 79.3
BcaB04g19388 Brassica carinata HOM05D003800 ORTHO05D004549 5.3e-90 335.1 231 70.1
Ca_07990_v3 Cicer arietinum L. HOM05D003800 ORTHO05D004549 9.9e-89 330.9 232 68.1
FAN14G0085 Fragaria x ananassa HOM05D003800 ORTHO05D004549 1.7e-88 330.1 203 77.3
Zm00001eb288110 Zea mays HOM05D003800 ORTHO05D004549 1.5e-84 317.0 191 76.4
Lju50C0T2 Lonicera japonica HOM05D003800 ORTHO05D004549 1.1e-79 300.8 175 80.0
Sed0006377 Sechium edule HOM05D003800 ORTHO05D004549 7.4e-68 261.5 145 83.4
Sp6g27750 Schrenkiella parvula HOM05D003800 ORTHO05D004549 3.8e-64 249.2 209 63.2
PRCOL_00001613 Prasinoderma coloniale HOM05D003800 ORTHO05D004549 2.1e-62 243.4 229 52.4
COL.COLO4_38023 Corchorus olitorius HOM05D003800 ORTHO05D004549 1.1e-60 237.7 131 81.7
CBR_g16018 Chara braunii HOM05D000019 ORTHO05D000353 4.2e-55 219.2 220 49.1
MCO12G260 Micromonas commoda HOM05D003800 ORTHO05D004549 1.4e-53 214.2 273 44.3
Haze_26091 Corylus avellana HOM05D003800 ORTHO05D004549 6.3e-43 178.7 225 39.1
BNapus_Darmor_BZH_scaffold_122p00260 Brassica napus HOM05D003800 ORTHO05D004549 8.2e-43 178.3 98 76.5
Cre11.g467544 Chlamydomonas reinhardtii HOM05D003800 ORTHO05D004549 1.0e-40 171.4 264 39.8
HanXRQChr09g0257811 Helianthus annuus HOM05D003800 ORTHO05D004549 1.1e-26 124.8 110 58.2
BNapus_Darmor_BZH_scaffold_122p00270 Brassica napus HOM05D003800 ORTHO05D004549 9.1e-26 121.7 115 60.0
TPR.G14062 Trifolium pratense HOM05D001872 ORTHO05D001859 8.6e-24 115.2 156 45.5
FvH4_6g42310 Fragaria vesca HOM05D003800 ORTHO05D045511 2.0e-20 104.0 74 70.3
FAN14G4609 Fragaria x ananassa HOM05D003800 ORTHO05D045511 2.0e-20 104.0 74 70.3
CDE09G0057 Ceratophyllum demersum HOM05D003800 ORTHO05D004549 6.3e-19 99.0 71 66.2
Nitab4.5_0000195g0040 Nicotiana tabacum HOM05D003800 ORTHO05D004549 7.0e-18 95.5 119 42.0
Nitab4.5_0000740g0050 Nicotiana tabacum HOM05D003800 ORTHO05D011827 1.2e-17 94.7 84 53.6
Eucgr.A01782 Eucalyptus grandis HOM05D007208 ORTHO05D009090 3.9e-16 89.7 61 72.1
PGSC0003DMG400012082 Solanum tuberosum HOM05D003800 ORTHO05D004549 4.9e-11 72.8 50 68.0
Nitab4.5_0007043g0020 Nicotiana tabacum HOM05D013000 ORTHO05D011827 8.6e-08 62.0 35 71.4
Haze_16698 Corylus avellana HOM05D004228 ORTHO05D005137 6.2e-06 55.8 144 28.5


User provided reference genes

Program Settings