Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C007855.2 Cucumis melo HOM05D003261 ORTHO05D004230 9.5e-32 139.4 64 100.0
CsaV3_6G046580 Cucumis sativus L. HOM05D003261 ORTHO05D004230 3.3e-24 114.4 61 85.2
MELO3C021320.2 Cucumis melo HOM05D003261 ORTHO05D004230 4.7e-23 110.5 59 83.1
ClCG06G005050 Citrullus lanatus HOM05D003261 ORTHO05D004230 8.0e-23 109.8 59 81.4
ATR0796G128 Amborella trichopoda HOM05D003261 ORTHO05D004230 1.0e-22 109.4 59 78.0
CSS0009030 Camellia sinensis var. sinensis HOM05D003261 ORTHO05D004230 1.8e-22 108.6 59 79.7
CSS0013014 Camellia sinensis var. sinensis HOM05D003261 ORTHO05D004230 1.8e-22 108.6 59 79.7
CsaV3_6G023930 Cucumis sativus L. HOM05D003261 ORTHO05D004230 1.8e-22 108.6 59 79.7
Actinidia19581 Actinidia chinensis HOM05D003261 ORTHO05D004230 3.0e-22 107.8 59 78.0
Actinidia40288 Actinidia chinensis HOM05D003261 ORTHO05D004230 3.0e-22 107.8 59 76.3
MBI16_g12924_MAGBIO Magnolia biondii HOM05D003261 ORTHO05D004230 3.0e-22 107.8 59 78.0
AagrBONN_evm.TU.Sc2ySwM_228.4942 Anthoceros agrestis HOM05D003261 ORTHO05D004230 4.0e-22 107.5 59 79.7
Nn4g25790 Nelumbo nucifera HOM05D003261 ORTHO05D004230 4.0e-22 107.5 59 79.7
QL06p009632 Quercus lobata HOM05D003261 ORTHO05D004230 4.0e-22 107.5 59 78.0
Aqoxy5G00755 Aquilegia oxysepala HOM05D003261 ORTHO05D004230 6.8e-22 106.7 59 78.0
Hma1.2p1_1185F.1_g264960 Hydrangea macrophylla HOM05D003261 ORTHO05D004230 6.8e-22 106.7 59 76.3
Hma1.2p1_1807F.1_g303320 Hydrangea macrophylla HOM05D003261 ORTHO05D004230 6.8e-22 106.7 59 76.3
Manes.03G196900 Manihot esculenta HOM05D003261 ORTHO05D004230 6.8e-22 106.7 59 76.3
PSO170G4560 Papaver somniferum HOM05D003261 ORTHO05D004230 6.8e-22 106.7 59 78.0
PSO407G0331 Papaver somniferum HOM05D003261 ORTHO05D004230 6.8e-22 106.7 59 78.0
Rhsim04G0224200 Rhododendron simsii HOM05D003261 ORTHO05D004230 6.8e-22 106.7 59 78.0
vmacro08167 Vaccinium macrocarpon HOM05D003261 ORTHO05D004230 6.8e-22 106.7 59 78.0
Ciclev10004853m.g Citrus clementina HOM05D003261 ORTHO05D004230 8.9e-22 106.3 59 76.3
Solyc01g094480.4 Solanum lycopersicum HOM05D003261 ORTHO05D004230 8.9e-22 106.3 59 74.6
Sopen01g038290 Solanum pennellii HOM05D003261 ORTHO05D004230 8.9e-22 106.3 59 74.6
Cpa.g.sc16.189 Carica papaya HOM05D003261 ORTHO05D004230 1.2e-21 105.9 59 76.3
COL.COLO4_13845 Corchorus olitorius HOM05D003261 ORTHO05D004230 1.2e-21 105.9 59 74.6
PGR004G2696 Punica granatum HOM05D003261 ORTHO05D004230 1.2e-21 105.9 59 76.3
RcHm_v2.0_Chr4g0422851 Rosa chinensis HOM05D003261 ORTHO05D004230 1.2e-21 105.9 59 76.3
arahy.Tifrunner.gnm1.ann1.9TJ054 Arachis hypogaea HOM05D003261 ORTHO05D004230 1.5e-21 105.5 59 74.6
arahy.Tifrunner.gnm1.ann1.JJQ0MC Arachis hypogaea HOM05D003261 ORTHO05D004230 1.5e-21 105.5 59 74.6
Glyma.09G043800 Glycine max HOM05D003261 ORTHO05D004230 1.5e-21 105.5 59 74.6
Glyma.15G149300 Glycine max HOM05D003261 ORTHO05D004230 1.5e-21 105.5 59 74.6
HanXRQChr17g0561551 Helianthus annuus HOM05D003261 ORTHO05D004230 1.5e-21 105.5 59 76.3
MD00G1128100 Malus domestica HOM05D003261 ORTHO05D004230 1.5e-21 105.5 59 76.3
Nn3g21489 Nelumbo nucifera HOM05D003261 ORTHO05D004230 1.5e-21 105.5 59 78.0
TPR.G22357 Trifolium pratense HOM05D003261 ORTHO05D004230 1.5e-21 105.5 59 74.6
Duzib052G0276 Durio zibethinus HOM05D003261 ORTHO05D004230 2.0e-21 105.1 59 76.3
ECA234G3111 Erigeron canadensis HOM05D001191 ORTHO05D000979 2.0e-21 105.1 59 78.0
Lj7A515T86 Lonicera japonica HOM05D003261 ORTHO05D004230 2.0e-21 105.1 59 74.6
Lj6g0023887 Lotus japonicus HOM05D003261 ORTHO05D004230 2.0e-21 105.1 59 72.9
Lalb_Chr15g0083461 Lupinus albus HOM05D003261 ORTHO05D004230 2.0e-21 105.1 59 74.6
Lalb_Chr18g0051601 Lupinus albus HOM05D003261 ORTHO05D004230 2.0e-21 105.1 59 72.9
Medtr2g436510 Medicago truncatula HOM05D003261 ORTHO05D004230 2.0e-21 105.1 59 72.9
Psat1g155040 Pisum sativum HOM05D003261 ORTHO05D004230 2.0e-21 105.1 59 72.9
THA.LOC104820293 Tarenaya hassleriana HOM05D003261 ORTHO05D004230 2.0e-21 105.1 59 74.6
VMungo1309G2776 Vigna mungo HOM05D003261 ORTHO05D004230 2.0e-21 105.1 59 74.6
Dinv29761 Davidia involucrata HOM05D003261 ORTHO05D004230 2.6e-21 104.8 54 83.3
ECA234G0824 Erigeron canadensis HOM05D003261 ORTHO05D004230 2.6e-21 104.8 59 76.3
FvH4_4g18400 Fragaria vesca HOM05D003261 ORTHO05D004230 2.6e-21 104.8 59 74.6
FAN07G1152 Fragaria x ananassa HOM05D003261 ORTHO05D004230 2.6e-21 104.8 59 74.6
FAN12G0468 Fragaria x ananassa HOM05D003261 ORTHO05D004230 2.6e-21 104.8 59 74.6
FAN12G4234 Fragaria x ananassa HOM05D003261 ORTHO05D004230 2.6e-21 104.8 59 74.6
FAN17G0608 Fragaria x ananassa HOM05D003261 ORTHO05D004230 2.6e-21 104.8 59 74.6
Lsat_1_v5_gn_4_36321 Lactuca sativa HOM05D003261 ORTHO05D004230 2.6e-21 104.8 59 76.3
Peaxi162Scf00056g00015 Petunia axillaris HOM05D003261 ORTHO05D004230 2.6e-21 104.8 59 72.9
Sed0025564 Sechium edule HOM05D003261 ORTHO05D004230 2.6e-21 104.8 59 76.3
TAR623G1368 Trochodendron aralioides HOM05D003261 ORTHO05D004230 2.6e-21 104.8 59 76.3
Duzib151G0067 Durio zibethinus HOM05D003261 ORTHO05D004230 3.4e-21 104.4 59 72.9
Gohir.A02G049900 Gossypium hirsutum HOM05D003261 ORTHO05D004230 3.4e-21 104.4 59 72.9
CDE09G0842 Ceratophyllum demersum HOM05D003261 ORTHO05D004230 4.4e-21 104.0 59 74.6
Ca_01925_v3 Cicer arietinum L. HOM05D003261 ORTHO05D004230 4.4e-21 104.0 59 71.2
MD16G1081900 Malus domestica HOM05D003261 ORTHO05D004230 4.4e-21 104.0 59 74.6
Nitab4.5_0003111g0030 Nicotiana tabacum HOM05D003261 ORTHO05D004230 4.4e-21 104.0 59 72.9
Phvul.009G249100 Phaseolus vulgaris HOM05D003261 ORTHO05D004230 4.4e-21 104.0 59 72.9
GSVIVG01035143001 Vitis vinifera HOM05D003261 ORTHO05D004230 4.4e-21 104.0 59 74.6
Haze_01185 Corylus avellana HOM05D003261 ORTHO05D004230 5.7e-21 103.6 59 71.2
Migut.B01741 Erythranthe guttata HOM05D003261 ORTHO05D004230 5.7e-21 103.6 59 72.9
PSO478G1326 Papaver somniferum HOM05D003261 ORTHO05D004230 5.7e-21 103.6 59 74.6
DCAR_008606 Daucus carota HOM05D003261 ORTHO05D004230 7.5e-21 103.2 59 72.9
Gohir.D02G055000 Gossypium hirsutum HOM05D003261 ORTHO05D004230 7.5e-21 103.2 59 71.2
Gorai.005G060900 Gossypium raimondii HOM05D003261 ORTHO05D004230 7.5e-21 103.2 59 71.2
unitig_8.g3803 Utricularia gibba HOM05D003261 ORTHO05D004230 7.5e-21 103.2 54 77.8
EL10Ac7g17420 Beta vulgaris HOM05D003261 ORTHO05D004230 9.8e-21 102.8 54 81.5
CiPaw.02G081900 Carya illinoinensis HOM05D003261 ORTHO05D004230 9.8e-21 102.8 59 72.9
AUR62034658 Chenopodium quinoa HOM05D003261 ORTHO05D004230 9.8e-21 102.8 54 81.5
FAN07G0399 Fragaria x ananassa HOM05D003261 ORTHO05D004230 9.8e-21 102.8 59 74.6
Gohir.A09G238100 Gossypium hirsutum HOM05D003261 ORTHO05D004230 9.8e-21 102.8 59 72.9
Gohir.D09G239000 Gossypium hirsutum HOM05D003261 ORTHO05D004230 9.8e-21 102.8 59 72.9
Gorai.006G261700 Gossypium raimondii HOM05D003261 ORTHO05D004230 9.8e-21 102.8 59 72.9
Potri.010G012800 Populus trichocarpa HOM05D003261 ORTHO05D004230 9.8e-21 102.8 59 72.9
Sabra10G0008000 Salix brachista HOM05D003261 ORTHO05D004230 9.8e-21 102.8 59 74.6
CANSAT78G0131 Cannabis sativa HOM05D003261 ORTHO05D004230 1.3e-20 102.4 59 72.9
CDE08G1027 Ceratophyllum demersum HOM05D003261 ORTHO05D004230 1.3e-20 102.4 59 72.9
Prupe.1G134100 Prunus persica HOM05D003261 ORTHO05D004230 1.3e-20 102.4 59 72.9
THA.LOC104821781 Tarenaya hassleriana HOM05D003261 ORTHO05D004230 1.3e-20 102.4 59 72.9
TPR.G39909 Trifolium pratense HOM05D003261 ORTHO05D004230 1.3e-20 102.4 59 72.9
TWI09G1311 Tripterygium wilfordii HOM05D003261 ORTHO05D004230 1.3e-20 102.4 59 71.2
Ah.08g212490 Amaranthus hybridus HOM05D003261 ORTHO05D004230 1.7e-20 102.1 59 72.9
CiPaw.01G147300 Carya illinoinensis HOM05D003261 ORTHO05D004230 1.7e-20 102.1 59 72.9
AUR62008590 Chenopodium quinoa HOM05D003261 ORTHO05D004230 1.7e-20 102.1 54 79.6
COL.COLO4_06938 Corchorus olitorius HOM05D003261 ORTHO05D004230 1.7e-20 102.1 59 72.9
Eucgr.H03935 Eucalyptus grandis HOM05D003261 ORTHO05D004230 1.7e-20 102.1 59 72.9
Pp3c16_8560 Physcomitrium patens HOM05D003261 ORTHO05D004230 2.2e-20 101.7 59 76.3
Sc19g0005390 Simmondsia chinensis HOM05D003261 ORTHO05D004230 2.2e-20 101.7 54 79.6
CBR_g46442 Chara braunii HOM05D003261 ORTHO05D004230 2.9e-20 101.3 59 72.9
Rhsim06G0116500 Rhododendron simsii HOM05D003261 ORTHO05D004230 2.9e-20 101.3 54 79.6
MSTRG.20825 Avicennia marina HOM05D003261 ORTHO05D004230 3.7e-20 100.9 54 75.9
MD16G1167100 Malus domestica HOM05D003261 ORTHO05D004230 3.7e-20 100.9 59 71.2
SEGI_14553 Sequoiadendron giganteum HOM05D003261 ORTHO05D004230 3.7e-20 100.9 59 74.6
FvH4_4g23450 Fragaria vesca HOM05D003261 ORTHO05D004230 4.9e-20 100.5 59 72.9
FAN12G3743 Fragaria x ananassa HOM05D003261 ORTHO05D004230 4.9e-20 100.5 59 72.9
Hund20540 Selenicereus undatus HOM05D003261 ORTHO05D004230 4.9e-20 100.5 54 77.8
Mapoly0016s0006 Marchantia polymorpha HOM05D003261 ORTHO05D004230 6.4e-20 100.1 59 71.2
Thecc.04G286600 Theobroma cacao HOM05D003261 ORTHO05D004230 6.4e-20 100.1 59 69.5
unitig_22.g5357 Utricularia gibba HOM05D003261 ORTHO05D004230 8.3e-20 99.8 54 74.1
Atru.chr4.2874 Acer truncatum HOM05D003261 ORTHO05D004230 1.1e-19 99.4 59 71.2
Cc02_g37840 Coffea canephora HOM05D003261 ORTHO05D004230 1.1e-19 99.4 54 75.9
DCAR_030163 Daucus carota HOM05D003261 ORTHO05D004230 1.1e-19 99.4 59 71.2
Nitab4.5_0014715g0010 Nicotiana tabacum HOM05D003261 ORTHO05D004230 1.1e-19 99.4 61 67.2
Os03g0339100 Oryza sativa ssp. japonica HOM05D003261 ORTHO05D004230 1.1e-19 99.4 59 71.2
Pp3c5_15520 Physcomitrium patens HOM05D003261 ORTHO05D004230 1.1e-19 99.4 59 72.9
AL7G39370 Arabidopsis lyrata HOM05D003261 ORTHO05D004230 1.8e-19 98.6 59 71.2
AT4G15900 Arabidopsis thaliana HOM05D003261 ORTHO05D004230 1.8e-19 98.6 59 71.2
BcaC06g33437 Brassica carinata HOM05D003261 ORTHO05D004230 1.8e-19 98.6 59 71.2
BcaNung00239 Brassica carinata HOM05D003261 ORTHO05D004230 1.8e-19 98.6 59 71.2
A03p49450 Brassica napus HOM05D003261 ORTHO05D004230 1.8e-19 98.6 59 71.2
C07p47500 Brassica napus HOM05D003261 ORTHO05D004230 1.8e-19 98.6 59 71.2
BolC7t45277H Brassica oleracea HOM05D003261 ORTHO05D004230 1.8e-19 98.6 59 71.2
BraA03t14046Z Brassica rapa HOM05D003261 ORTHO05D004230 1.8e-19 98.6 59 71.2
CARHR290440 Cardamine hirsuta HOM05D003261 ORTHO05D004230 1.8e-19 98.6 59 71.2
Thhalv10025068m.g Eutrema salsugineum HOM05D003261 ORTHO05D004230 1.8e-19 98.6 59 71.2
Rhsim12G0061000 Rhododendron simsii HOM05D003261 ORTHO05D004230 1.8e-19 98.6 57 71.9
BcaC09g48619 Brassica carinata HOM05D003261 ORTHO05D004230 2.4e-19 98.2 59 71.2
A01p37650 Brassica napus HOM05D003261 ORTHO05D004230 2.4e-19 98.2 59 71.2
C01p47680 Brassica napus HOM05D003261 ORTHO05D004230 2.4e-19 98.2 59 71.2
BolC1t04740H Brassica oleracea HOM05D003261 ORTHO05D004230 2.4e-19 98.2 59 71.2
BraA01t03826Z Brassica rapa HOM05D003261 ORTHO05D004230 2.4e-19 98.2 59 71.2
CiPaw.14G132800 Carya illinoinensis HOM05D003261 ORTHO05D004230 2.4e-19 98.2 54 77.8
Peaxi162Scf00089g00028 Petunia axillaris HOM05D003261 ORTHO05D004230 3.2e-19 97.8 59 69.5
SalBow3G0655 Salvia bowleyana HOM05D003261 ORTHO05D004230 3.2e-19 97.8 54 72.2
SMO240G0024 Selaginella moellendorffii HOM05D003261 ORTHO05D004230 3.2e-19 97.8 59 67.8
Zm00001eb051300 Zea mays HOM05D003261 ORTHO05D004230 3.2e-19 97.8 59 69.5
Aa31LG8G3770 Aethionema arabicum HOM05D003261 ORTHO05D004230 4.1e-19 97.4 59 69.5
BcaC06g32973 Brassica carinata HOM05D003261 ORTHO05D004230 4.1e-19 97.4 59 69.5
A09p49870 Brassica napus HOM05D003261 ORTHO05D004230 4.1e-19 97.4 59 71.2
BraA09t40438Z Brassica rapa HOM05D003261 ORTHO05D004230 4.1e-19 97.4 59 71.2
CARHR091900 Cardamine hirsuta HOM05D003261 ORTHO05D004230 4.1e-19 97.4 59 71.2
Carub.0007s2576 Capsella rubella HOM05D003261 ORTHO05D004230 5.4e-19 97.1 59 67.8
Sp7g14350 Schrenkiella parvula HOM05D003261 ORTHO05D004230 5.4e-19 97.1 59 67.8
DCAR_030161 Daucus carota HOM05D003261 ORTHO05D004230 7.0e-19 96.7 59 69.5
Aa31LG10G6240 Aethionema arabicum HOM05D003261 ORTHO05D004230 9.2e-19 96.3 59 67.8
AT3G16650 Arabidopsis thaliana HOM05D003261 ORTHO05D004230 9.2e-19 96.3 59 69.5
Carub.0003s1638 Capsella rubella HOM05D003261 ORTHO05D004230 9.2e-19 96.3 59 69.5
Cfa002537 Carpinus fangiana HOM05D003261 ORTHO05D004230 9.2e-19 96.3 59 69.5
Medtr2g019400 Medicago truncatula HOM05D003261 ORTHO05D004230 9.2e-19 96.3 60 66.7
Sp3g14940 Schrenkiella parvula HOM05D003261 ORTHO05D004230 9.2e-19 96.3 59 69.5
CiPaw.06G074500 Carya illinoinensis HOM05D003261 ORTHO05D004230 1.2e-18 95.9 54 75.9
DCAR_030165 Daucus carota HOM05D003261 ORTHO05D004230 1.6e-18 95.5 59 69.5
Prupe.6G318200 Prunus persica HOM05D003261 ORTHO05D004230 2.0e-18 95.1 59 67.8
AL3G29570 Arabidopsis lyrata HOM05D003261 ORTHO05D004230 2.7e-18 94.7 59 67.8
Thhalv10022263m.g Eutrema salsugineum HOM05D003261 ORTHO05D004230 2.7e-18 94.7 59 67.8
Aqoxy7G03551 Aquilegia oxysepala HOM05D003261 ORTHO05D014021 4.6e-18 94.0 56 71.4
RcHm_v2.0_Chr4g0429821 Rosa chinensis HOM05D003261 ORTHO05D004230 5.9e-18 93.6 59 67.8
HPP92_023226 Vanilla planifolia HOM05D003261 ORTHO05D004230 5.9e-18 93.6 54 75.9
SGA_v2.0_scaffold95G28842 Striga asiatica HOM05D003261 ORTHO05D004230 1.7e-17 92.0 53 71.7
Peaxi162Scf00858g00015 Petunia axillaris HOM05D003261 ORTHO05D004230 2.3e-17 91.7 57 64.9
Aqoxy3G03984 Aquilegia oxysepala HOM05D003261 ORTHO05D004230 3.0e-17 91.3 59 69.5
Nitab4.5_0001251g0010 Nicotiana tabacum HOM05D003261 ORTHO05D004230 1.5e-16 89.0 87 49.4
HanXRQChr15g0490951 Helianthus annuus HOM05D003261 ORTHO05D004230 1.9e-16 88.6 59 69.5
PGSC0003DMG400008918 Solanum tuberosum HOM05D003261 ORTHO05D004230 1.9e-16 88.6 60 60.0
DCAR_003343 Daucus carota HOM05D003261 ORTHO05D004230 2.5e-16 88.2 59 66.1
Haze_27215 Corylus avellana HOM05D003261 ORTHO05D004230 2.1e-15 85.1 59 57.6
Cre10.g446900 Chlamydomonas reinhardtii HOM05D003261 ORTHO05D004230 4.0e-14 80.9 59 52.5
MCO14G267 Micromonas commoda HOM05D003261 ORTHO05D004230 5.2e-14 80.5 59 57.6
PRCOL_00003913 Prasinoderma coloniale HOM05D003261 ORTHO05D004230 5.2e-14 80.5 54 59.3
C08p32230 Brassica napus HOM05D000211 ORTHO05D041739 1.5e-13 79.0 51 64.7
Sopen09g005330 Solanum pennellii HOM05D003261 ORTHO05D014021 1.5e-13 79.0 65 53.8
Aqoxy3G03983 Aquilegia oxysepala HOM05D003261 ORTHO05D004230 4.9e-12 73.9 59 55.9
BcaC07g40009 Brassica carinata HOM05D000211 ORTHO05D004230 4.9e-12 73.9 51 62.7
COL.COLO4_10588 Corchorus olitorius HOM05D004885 ORTHO05D006124 1.1e-11 72.8 55 56.4
Nitab4.5_0002089g0060 Nicotiana tabacum HOM05D003261 ORTHO05D014021 1.9e-11 72.0 43 67.4
Aqoxy5G03295 Aquilegia oxysepala HOM05D003261 ORTHO05D004230 6.0e-10 67.0 61 49.2
TAR365G1013 Trochodendron aralioides HOM05D003261 ORTHO05D004230 9.5e-08 59.7 32 87.5
Migut.E01441 Erythranthe guttata HOM05D003261 ORTHO05D004230 2.1e-07 58.5 44 54.5
BcaC09g50284 Brassica carinata HOM05D003261 ORTHO05D004230 4.7e-07 57.4 36 72.2
C01p26990 Brassica napus HOM05D003261 ORTHO05D004230 4.7e-07 57.4 36 72.2
BolC1t02648H Brassica oleracea HOM05D003261 ORTHO05D004230 4.7e-07 57.4 36 72.2
BraA01t02073Z Brassica rapa HOM05D003261 ORTHO05D004230 5.2e-06 53.9 36 69.4


User provided reference genes

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