Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C005892.2 Cucumis melo HOM05D005626 ORTHO05D007372 3.9e-162 575.5 481 100.0
CsaV3_5G000430 Cucumis sativus L. HOM05D005626 ORTHO05D007372 6.2e-152 541.6 481 93.3
ClCG01G000360 Citrullus lanatus HOM05D005626 ORTHO05D007372 4.0e-143 512.3 481 91.1
Sed0007830 Sechium edule HOM05D005626 ORTHO05D007372 1.5e-113 414.1 481 80.5
Sabra15G0008900 Salix brachista HOM05D005626 ORTHO05D007372 1.8e-103 380.6 475 74.9
Manes.06G012351 Manihot esculenta HOM05D005626 ORTHO05D007372 1.5e-102 377.5 475 58.9
Dinv29256 Davidia involucrata HOM05D005626 ORTHO05D007372 2.0e-102 377.1 475 70.3
Potri.015G010800 Populus trichocarpa HOM05D005626 ORTHO05D007372 2.6e-102 376.7 475 73.5
Atru.chr12.2245_Atru.chr12.2244 Acer truncatum HOM05D005626 ORTHO05D007372 9.4e-100 368.2 474 60.5
Migut.F00199 Erythranthe guttata HOM05D005626 ORTHO05D007372 2.6e-97 360.1 470 58.3
Oeu010695.1 Olea europaea HOM05D005626 ORTHO05D007372 5.0e-93 345.9 414 60.1
EL10Ac3g05260 Beta vulgaris HOM05D005626 ORTHO05D007372 1.2e-91 341.3 473 63.4
Eucgr.A01448 Eucalyptus grandis HOM05D005626 ORTHO05D007372 4.7e-91 339.3 470 63.2
Lj8A623T21 Lonicera japonica HOM05D005626 ORTHO05D007372 2.3e-90 337.0 470 69.8
CANSAT21G0821 Cannabis sativa HOM05D005626 ORTHO05D007372 8.8e-90 335.1 468 53.6
CDE02G3804 Ceratophyllum demersum HOM05D005626 ORTHO05D007372 1.7e-88 330.9 469 55.7
MBI07_g24765_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 1.7e-88 330.9 482 51.0
Peaxi162Scf00740g00226 Petunia axillaris HOM05D005626 ORTHO05D007372 4.8e-88 329.3 470 58.5
Nitab4.5_0005491g0050 Nicotiana tabacum HOM05D005626 ORTHO05D007372 1.1e-87 328.2 469 56.5
Cc02_g01370 Coffea canephora HOM05D005626 ORTHO05D007372 3.1e-87 326.6 477 48.2
Sopen03g022800 Solanum pennellii HOM05D005626 ORTHO05D007372 3.1e-87 326.6 469 55.9
Solyc03g082990.3 Solanum lycopersicum HOM05D005626 ORTHO05D007372 1.6e-86 324.3 475 54.9
Ciclev10020013m.g Citrus clementina HOM05D005626 ORTHO05D007372 1.1e-84 318.2 470 63.2
CAN.G481.28 Capsicum annuum HOM05D005626 ORTHO05D007372 6.1e-83 312.4 469 52.9
PSO170G4344 Papaver somniferum HOM05D005626 ORTHO05D007372 3.0e-82 310.1 474 68.1
QL09p007984 Quercus lobata HOM05D005626 ORTHO05D007372 3.0e-82 310.1 471 60.7
FAN10G2571 Fragaria x ananassa HOM05D005626 ORTHO05D007372 6.8e-82 308.9 468 67.1
PSO063G0511 Papaver somniferum HOM05D005626 ORTHO05D007372 1.7e-80 304.3 414 66.7
Actinidia18659 Actinidia chinensis HOM05D005626 ORTHO05D007372 1.1e-79 301.6 471 54.8
CSS0044766 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 2.0e-78 297.4 478 55.9
Glyma.04G234300 Glycine max HOM05D005626 ORTHO05D007372 7.2e-76 288.9 476 64.9
Lalb_Chr08g0240121 Lupinus albus HOM05D005626 ORTHO05D007372 1.2e-75 288.1 469 60.8
GSVIVG01038569001 Vitis vinifera HOM05D005626 ORTHO05D007372 1.2e-75 288.1 470 51.9
Cfa016215 Carpinus fangiana HOM05D005626 ORTHO05D007372 3.6e-75 286.6 468 49.6
Manes.06G011400 Manihot esculenta HOM05D005626 ORTHO05D007372 4.0e-74 283.1 388 60.1
CiPaw.06G045100 Carya illinoinensis HOM05D005626 ORTHO05D007372 1.2e-73 281.6 474 56.8
Duzib084G0104 Durio zibethinus HOM05D005626 ORTHO05D007372 2.9e-72 276.9 475 59.4
Hma1.2p1_2307F.1_g319430 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 3.7e-72 276.6 468 61.8
Hma1.2p1_0591F.1_g185250 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 1.4e-71 274.6 477 61.6
Thecc.03G201200 Theobroma cacao HOM05D005626 ORTHO05D007372 1.4e-71 274.6 474 54.0
Ah.07g205460 Amaranthus hybridus HOM05D005626 ORTHO05D007372 3.2e-71 273.5 514 54.5
Lj1g0019302 Lotus japonicus HOM05D005626 ORTHO05D007372 3.2e-71 273.5 470 55.1
SalBow4G1489 Salvia bowleyana HOM05D005626 ORTHO05D007372 5.4e-71 272.7 466 48.9
PGR042G1168 Punica granatum HOM05D005626 ORTHO05D007372 9.2e-71 271.9 477 56.8
FAN06G4319 Fragaria x ananassa HOM05D005626 ORTHO05D007372 1.3e-69 268.1 468 57.3
Prupe.2G313200 Prunus persica HOM05D005626 ORTHO05D007372 3.9e-69 266.5 480 48.1
unitig_92.g28249 Utricularia gibba HOM05D005626 ORTHO05D007372 3.9e-69 266.5 472 47.7
MD01G1222800 Malus domestica HOM05D005626 ORTHO05D007372 6.6e-69 265.8 474 52.7
FvH4_7g31990 Fragaria vesca HOM05D005626 ORTHO05D007372 8.6e-69 265.4 468 57.1
VMungo1309G2515 Vigna mungo HOM05D005626 ORTHO05D007372 8.6e-69 265.4 416 59.6
AT5G53080 Arabidopsis thaliana HOM05D005626 ORTHO05D007372 1.1e-68 265.0 480 55.4
Thhalv10013148m.g Eutrema salsugineum HOM05D005626 ORTHO05D007372 1.1e-68 265.0 474 57.8
Gohir.D09G179900 Gossypium hirsutum HOM05D005626 ORTHO05D007372 1.9e-68 264.2 475 49.5
MSTRG.27018 Avicennia marina HOM05D005626 ORTHO05D007372 2.5e-68 263.8 455 52.5
Cpa.g.sc3.101 Carica papaya HOM05D005626 ORTHO05D007372 4.3e-68 263.1 474 57.6
CSS0003989 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 5.6e-68 262.7 544 39.7
Phvul.009G051300 Phaseolus vulgaris HOM05D005626 ORTHO05D007372 7.3e-68 262.3 476 59.5
AL8G27710 Arabidopsis lyrata HOM05D005626 ORTHO05D007372 2.1e-67 260.8 470 57.7
TAR375G0360 Trochodendron aralioides HOM05D005626 ORTHO05D007372 8.0e-67 258.8 474 52.7
RcHm_v2.0_Chr1g0381501 Rosa chinensis HOM05D005626 ORTHO05D007372 1.0e-66 258.5 476 54.8
AUR62006074 Chenopodium quinoa HOM05D005626 ORTHO05D007372 1.8e-66 257.7 466 47.2
Carub.0008s1328 Capsella rubella HOM05D005626 ORTHO05D007372 8.9e-66 255.4 470 56.4
Nn1g00302 Nelumbo nucifera HOM05D005626 ORTHO05D007372 1.2e-65 255.0 474 55.1
Sp6g15250 Schrenkiella parvula HOM05D005626 ORTHO05D007372 1.2e-65 255.0 470 57.4
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 1.5e-65 254.6 477 55.1
Medtr3g091780 Medicago truncatula HOM05D005626 ORTHO05D007372 2.6e-65 253.8 473 62.2
THA.LOC104799967 Tarenaya hassleriana HOM05D005626 ORTHO05D007372 2.6e-65 253.8 467 43.9
A02p11310 Brassica napus HOM05D005626 ORTHO05D007372 3.4e-65 253.4 474 57.0
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 3.4e-65 253.4 460 40.2
COL.COLO4_16792 Corchorus olitorius HOM05D005626 ORTHO05D007032 7.5e-65 252.3 413 60.3
arahy.Tifrunner.gnm1.ann1.ULB6CG Arachis hypogaea HOM05D005626 ORTHO05D007372 1.7e-64 251.1 472 44.5
BraA02t06193Z Brassica rapa HOM05D005626 ORTHO05D007372 3.7e-64 250.0 474 57.0
Gorai.006G201900 Gossypium raimondii HOM05D005626 ORTHO05D007372 3.7e-64 250.0 507 44.0
TPR.G33639 Trifolium pratense HOM05D005626 ORTHO05D007372 4.9e-64 249.6 473 49.5
TWI39G0896 Tripterygium wilfordii HOM05D005626 ORTHO05D007372 8.3e-64 248.8 470 55.3
CARHR266100 Cardamine hirsuta HOM05D005626 ORTHO05D007372 2.4e-63 247.3 467 56.7
Hund11648 Selenicereus undatus HOM05D005626 ORTHO05D007372 2.4e-63 247.3 471 44.4
arahy.Tifrunner.gnm1.ann1.CHU3M4 Arachis hypogaea HOM05D005626 ORTHO05D007372 9.2e-63 245.4 476 48.9
BolC2t08014H Brassica oleracea HOM05D005626 ORTHO05D007372 1.6e-62 244.6 469 56.5
BcaC03g14458 Brassica carinata HOM05D005626 ORTHO05D007372 2.0e-62 244.2 467 57.6
C02p18690 Brassica napus HOM05D005626 ORTHO05D007372 2.0e-62 244.2 471 56.3
Ca_16720_v3 Cicer arietinum L. HOM05D005626 ORTHO05D007372 6.0e-62 242.7 476 54.4
HanXRQChr15g0485681 Helianthus annuus HOM05D005626 ORTHO05D007372 6.0e-62 242.7 470 60.0
arahy.Tifrunner.gnm1.ann1.1DU7LF Arachis hypogaea HOM05D005626 ORTHO05D007372 7.8e-62 242.3 479 42.2
arahy.Tifrunner.gnm1.ann1.DCMH6Q Arachis hypogaea HOM05D005626 ORTHO05D007372 3.9e-61 240.0 455 46.6
Psat5g076080 Pisum sativum HOM05D005626 ORTHO05D007372 3.3e-60 236.9 475 52.8
CSS0000100 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 1.6e-59 234.6 484 40.5
HPP92_005288 Vanilla planifolia HOM05D005626 ORTHO05D007372 1.6e-59 234.6 397 46.9
Aqoxy5G04311 Aquilegia oxysepala HOM05D005626 ORTHO05D007372 2.8e-59 233.8 475 53.1
AUR62035551 Chenopodium quinoa HOM05D005626 ORTHO05D007372 4.7e-59 233.0 489 39.1
Haze_00226 Corylus avellana HOM05D005626 ORTHO05D007372 1.4e-58 231.5 433 48.5
DCAR_010593 Daucus carota HOM05D005626 ORTHO05D007372 2.3e-58 230.7 163 72.4
QL09p008055 Quercus lobata HOM05D005626 ORTHO05D007372 2.3e-58 230.7 429 37.5
PGSC0003DMG400018528 Solanum tuberosum HOM05D005626 ORTHO05D007372 6.8e-58 229.2 210 69.0
Sc25g0000940 Simmondsia chinensis HOM05D005626 ORTHO05D007372 4.4e-57 226.5 425 49.6
Lsat_1_v5_gn_9_49841 Lactuca sativa HOM05D005626 ORTHO05D007372 9.8e-57 225.3 470 49.8
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 4.9e-56 223.0 494 32.8
ECA232G0910 Erigeron canadensis HOM05D005626 ORTHO05D007372 3.2e-55 220.3 467 53.1
BcaB05g22007 Brassica carinata HOM05D005626 ORTHO05D007372 1.2e-54 218.4 496 46.4
MBI07_g43862_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 1.9e-52 211.1 419 35.8
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 4.0e-50 203.4 411 52.8
Lj1A1021T49 Lonicera japonica HOM05D005626 ORTHO05D007372 1.7e-48 198.0 195 71.8
Gohir.A09G185000 Gossypium hirsutum HOM05D005626 ORTHO05D007372 6.2e-43 179.5 299 57.5
ATR0730G125 Amborella trichopoda HOM05D005626 ORTHO05D007372 6.8e-42 176.0 328 56.7
Manes.06G012101 Manihot esculenta HOM05D005626 ORTHO05D007372 2.5e-36 157.5 136 58.1
FAN10G0040 Fragaria x ananassa HOM05D005626 ORTHO05D009683 7.3e-36 156.0 131 58.8
Glyma.06G130267 Glycine max HOM05D005626 ORTHO05D007372 6.2e-35 152.9 105 73.3
Glyma.06G130333 Glycine max HOM05D005626 ORTHO05D007372 1.6e-30 138.3 116 57.8
MBI19_g14786_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 1.0e-29 135.6 127 52.8
QL09p008133 Quercus lobata HOM05D005626 ORTHO05D007372 3.1e-26 124.0 78 80.8
Mapoly0045s0029 Marchantia polymorpha HOM05D005626 ORTHO05D007372 2.6e-25 120.9 349 46.7
Mapoly0001s0084 Marchantia polymorpha HOM05D005626 ORTHO05D007372 4.9e-24 116.7 402 30.8
BcaB01g04215 Brassica carinata HOM05D005626 ORTHO05D007372 8.4e-24 115.9 154 40.9
MBI19_g14787_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 9.6e-20 102.4 69 71.0
FAN10G4199 Fragaria x ananassa HOM05D005626 ORTHO05D007372 1.3e-19 102.1 121 72.7
CSS0006573 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 1.4e-18 98.6 86 59.3
Manes.06G011750 Manihot esculenta HOM05D005626 ORTHO05D007372 4.5e-17 93.6 58 77.6
Pp3c5_16230 Physcomitrium patens HOM05D005626 ORTHO05D007372 8.4e-16 89.4 339 29.2
BcaB01g04214 Brassica carinata HOM05D005626 ORTHO05D007372 2.1e-14 84.7 156 37.2
AagrBONN_evm.TU.Sc2ySwM_369.443 Anthoceros agrestis HOM05D005626 ORTHO05D007372 6.0e-14 83.2 136 35.3
Pp3c5_16240 Physcomitrium patens HOM05D005626 ORTHO05D007372 7.9e-14 82.8 318 50.9
Cfa019813 Carpinus fangiana HOM05D005626 ORTHO05D007372 2.3e-13 81.3 62 64.5
MD07G1293500 Malus domestica HOM05D005626 ORTHO05D007372 3.9e-13 80.5 54 70.4
Actinidia06140 Actinidia chinensis HOM05D005626 ORTHO05D007372 6.3e-11 73.2 60 58.3
Pp3c16_9300 Physcomitrium patens HOM05D005626 ORTHO05D007372 6.3e-11 73.2 136 32.4
Pp3c23_14930 Physcomitrium patens HOM05D005626 ORTHO05D007372 2.4e-10 71.2 140 31.4
MD07G1293400 Malus domestica HOM05D005626 ORTHO05D007372 3.1e-10 70.9 121 41.3
QL09p008114 Quercus lobata HOM05D005626 ORTHO05D007372 3.1e-10 70.9 52 63.5
Pp3c8_12740 Physcomitrium patens HOM05D005626 ORTHO05D007372 3.8e-08 63.9 136 28.7


User provided reference genes

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