Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C003340.2 Cucumis melo HOM05D005140 ORTHO05D006288 1.0e-277 959.5 518 100.0
CsaV3_3G049760 Cucumis sativus L. HOM05D005140 ORTHO05D006288 3.7e-275 951.0 520 99.0
ClCG09G012630 Citrullus lanatus HOM05D005140 ORTHO05D006288 4.1e-266 921.0 521 97.1
Sed0013740 Sechium edule HOM05D005140 ORTHO05D006288 9.4e-247 856.7 439 93.2
Sed0020438 Sechium edule HOM05D005140 ORTHO05D006288 3.8e-240 834.7 441 91.8
Rhsim07G0119600 Rhododendron simsii HOM05D005140 ORTHO05D006288 1.9e-223 779.2 440 84.1
Atru.chr9.1157 Acer truncatum HOM05D005140 ORTHO05D006288 2.7e-222 775.4 423 84.4
Gorai.004G191200 Gossypium raimondii HOM05D005140 ORTHO05D006288 4.7e-222 774.6 437 84.0
Thecc.03G238100 Theobroma cacao HOM05D005140 ORTHO05D006288 6.1e-222 774.2 524 83.0
Prupe.5G053400 Prunus persica HOM05D005140 ORTHO05D006288 8.0e-222 773.9 432 85.2
QL12p008469 Quercus lobata HOM05D005140 ORTHO05D006288 1.0e-221 773.5 522 79.5
Glyma.01G204000 Glycine max HOM05D005140 ORTHO05D006288 8.8e-221 770.4 424 85.8
Gohir.D08G182300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 1.3e-219 766.5 437 83.3
Phvul.002G002400 Phaseolus vulgaris HOM05D005140 ORTHO05D006288 2.2e-219 765.8 442 82.4
Glyma.11G039000 Glycine max HOM05D005140 ORTHO05D006288 1.8e-218 762.7 426 84.5
RcHm_v2.0_Chr7g0206411 Rosa chinensis HOM05D005140 ORTHO05D006288 1.8e-218 762.7 432 84.3
Lalb_Chr09g0324091 Lupinus albus HOM05D005140 ORTHO05D006288 4.1e-218 761.5 425 84.2
TAR636G3078 Trochodendron aralioides HOM05D005140 ORTHO05D006288 4.1e-218 761.5 427 84.3
CiPaw.12G056200 Carya illinoinensis HOM05D005140 ORTHO05D006288 7.0e-218 760.8 430 84.9
CANSAT21G2106 Cannabis sativa HOM05D005140 ORTHO05D006288 1.6e-217 759.6 455 80.9
Manes.01G182900 Manihot esculenta HOM05D005140 ORTHO05D006288 3.8e-216 755.0 422 85.3
PGR031G2829 Punica granatum HOM05D005140 ORTHO05D006288 5.0e-216 754.6 424 83.0
Cc08_g11170 Coffea canephora HOM05D005140 ORTHO05D006288 1.1e-215 753.4 423 84.4
Dinv25152 Davidia involucrata HOM05D005140 ORTHO05D006288 1.5e-215 753.1 519 81.9
vmacro23518 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 2.5e-215 752.3 439 82.2
FAN13G1317 Fragaria x ananassa HOM05D005140 ORTHO05D006288 3.3e-215 751.9 434 83.6
Nn6g33739 Nelumbo nucifera HOM05D005140 ORTHO05D006288 3.3e-215 751.9 424 83.0
MSTRG.13768 Avicennia marina HOM05D005140 ORTHO05D006288 4.3e-215 751.5 423 84.2
COL.COLO4_06693 Corchorus olitorius HOM05D005140 ORTHO05D006288 4.3e-215 751.5 435 83.4
arahy.Tifrunner.gnm1.ann1.FH98R9 Arachis hypogaea HOM05D005140 ORTHO05D006288 5.6e-215 751.1 453 79.9
arahy.Tifrunner.gnm1.ann1.W7TPG2 Arachis hypogaea HOM05D005140 ORTHO05D006288 5.6e-215 751.1 453 79.9
Eucgr.D02138 Eucalyptus grandis HOM05D005140 ORTHO05D006288 6.1e-214 747.7 544 78.1
Ca_24617_v3 Cicer arietinum L. HOM05D005140 ORTHO05D006288 8.0e-214 747.3 448 80.1
FAN04G2093 Fragaria x ananassa HOM05D005140 ORTHO05D006288 1.0e-213 746.9 433 83.4
FvH4_5g20680 Fragaria vesca HOM05D005140 ORTHO05D006288 1.4e-213 746.5 433 83.1
Actinidia31490 Actinidia chinensis HOM05D005140 ORTHO05D006288 5.2e-213 744.6 478 76.2
Solyc08g077750.4 Solanum lycopersicum HOM05D005140 ORTHO05D006288 8.9e-213 743.8 420 83.1
CAN.G572.25 Capsicum annuum HOM05D005140 ORTHO05D006288 1.5e-212 743.0 421 83.4
Psat2g175480 Pisum sativum HOM05D005140 ORTHO05D006288 1.5e-212 743.0 427 82.9
Sopen08g026270 Solanum pennellii HOM05D005140 ORTHO05D006288 3.4e-212 741.9 420 82.6
FAN08G1378 Fragaria x ananassa HOM05D005140 ORTHO05D006288 5.7e-212 741.1 427 84.3
Lj2g0026795 Lotus japonicus HOM05D005140 ORTHO05D006288 1.3e-211 740.0 426 82.4
Haze_08349 Corylus avellana HOM05D005140 ORTHO05D006288 2.9e-211 738.8 432 81.9
Potri.001G149900 Populus trichocarpa HOM05D005140 ORTHO05D006288 8.3e-211 737.3 422 82.5
DCAR_008319 Daucus carota HOM05D005140 ORTHO05D006288 4.1e-210 734.9 423 82.7
Gohir.A08G162300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 5.4e-210 734.6 437 81.5
Peaxi162Scf00301g01111 Petunia axillaris HOM05D005140 ORTHO05D006288 2.7e-209 732.3 427 81.5
Migut.F01520 Erythranthe guttata HOM05D005140 ORTHO05D006288 5.0e-208 728.0 441 79.4
SGA_v2.0_scaffold20G09272 Striga asiatica HOM05D005140 ORTHO05D006288 8.6e-208 727.2 435 81.1
Duzib068G0986 Durio zibethinus HOM05D005140 ORTHO05D006288 1.5e-207 726.5 430 81.9
Hund14471 Selenicereus undatus HOM05D005140 ORTHO05D006288 7.3e-207 724.2 421 82.2
TWI60G0080 Tripterygium wilfordii HOM05D005140 ORTHO05D006288 1.6e-206 723.0 439 77.9
Dinv28888 Davidia involucrata HOM05D005140 ORTHO05D006288 8.0e-206 720.7 413 82.6
Lsat_1_v5_gn_6_94760 Lactuca sativa HOM05D005140 ORTHO05D006288 4.4e-204 714.9 452 78.1
PSO063G3549 Papaver somniferum HOM05D005140 ORTHO05D006288 4.4e-204 714.9 432 79.9
PSO782G2508 Papaver somniferum HOM05D005140 ORTHO05D006288 7.5e-204 714.1 432 79.9
vmacro14121 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 1.3e-203 713.4 439 79.0
MD06G1045500 Malus domestica HOM05D005140 ORTHO05D006288 7.0e-202 707.6 438 78.3
Sabra01G0119900 Salix brachista HOM05D005140 ORTHO05D006288 9.2e-202 707.2 488 71.7
MD00G1132300 Malus domestica HOM05D005140 ORTHO05D006288 1.6e-201 706.4 432 79.6
unitig_699.g19774 Utricularia gibba HOM05D005140 ORTHO05D006288 4.6e-201 704.9 424 79.5
Ah.12g053860 Amaranthus hybridus HOM05D005140 ORTHO05D006288 7.8e-201 704.1 418 80.6
Medtr5g013580 Medicago truncatula HOM05D005140 ORTHO05D006288 1.1e-197 693.7 427 77.8
EL10Ac5g12239 Beta vulgaris HOM05D005140 ORTHO05D006288 2.0e-196 689.5 461 73.5
THA.LOC104798349 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 2.6e-196 689.1 447 74.3
Carub.0007s2375 Capsella rubella HOM05D005140 ORTHO05D006288 7.5e-196 687.6 439 73.6
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 9.8e-196 687.2 426 77.9
Nn1g00730 Nelumbo nucifera HOM05D005140 ORTHO05D006288 2.9e-195 685.6 418 78.9
Nitab4.5_0012059g0010 Nicotiana tabacum HOM05D005140 ORTHO05D006288 6.4e-195 684.5 452 74.6
TPR.G22969 Trifolium pratense HOM05D005140 ORTHO05D006288 3.2e-194 682.2 428 78.3
AT4G17620 Arabidopsis thaliana HOM05D005140 ORTHO05D006288 2.1e-193 679.5 441 73.0
Nitab4.5_0004689g0020 Nicotiana tabacum HOM05D005140 ORTHO05D006288 4.6e-193 678.3 437 75.5
Ciclev10019303m.g Citrus clementina HOM05D005140 ORTHO05D006288 3.0e-192 675.6 520 73.8
CARHR224350 Cardamine hirsuta HOM05D005140 ORTHO05D006288 1.5e-191 673.3 448 71.9
BcaC06g33554 Brassica carinata HOM05D005140 ORTHO05D006288 1.9e-191 672.9 423 74.0
Aqoxy3G02576 Aquilegia oxysepala HOM05D005140 ORTHO05D006288 9.5e-191 670.6 424 77.1
Sp7g16510 Schrenkiella parvula HOM05D005140 ORTHO05D006288 1.2e-190 670.2 436 71.8
GSVIVG01013286001 Vitis vinifera HOM05D005140 ORTHO05D006288 1.4e-189 666.8 351 88.9
BcaNung03452 Brassica carinata HOM05D005140 ORTHO05D006288 4.0e-189 665.2 420 74.8
BcaNung00074 Brassica carinata HOM05D005140 ORTHO05D006288 5.2e-189 664.8 450 70.0
A03p50570 Brassica napus HOM05D005140 ORTHO05D006288 8.9e-189 664.1 428 73.4
BolC7t45397H Brassica oleracea HOM05D005140 ORTHO05D006288 1.2e-188 663.7 436 71.8
BraA03t14147Z Brassica rapa HOM05D005140 ORTHO05D006288 5.8e-188 661.4 442 71.3
C07p48890 Brassica napus HOM05D005140 ORTHO05D006288 7.6e-188 661.0 436 71.6
C01p11300 Brassica napus HOM05D005140 ORTHO05D006288 1.9e-186 656.4 423 72.8
Thhalv10024864m.g Eutrema salsugineum HOM05D005140 ORTHO05D006288 4.1e-186 655.2 420 74.0
HPP92_020526 Vanilla planifolia HOM05D005140 ORTHO05D006288 5.4e-186 654.8 426 74.9
Aa31LG6G380 Aethionema arabicum HOM05D005140 ORTHO05D006288 1.0e-184 650.6 442 70.6
FAN18G3556 Fragaria x ananassa HOM05D005140 ORTHO05D006288 5.6e-183 644.8 395 80.0
A01p09690 Brassica napus HOM05D005140 ORTHO05D006288 1.6e-182 643.3 450 69.3
HanXRQChr03g0089631 Helianthus annuus HOM05D005140 ORTHO05D006288 1.6e-182 643.3 425 74.6
BraA01t00912Z Brassica rapa HOM05D005140 ORTHO05D006288 1.8e-181 639.8 443 69.3
HPP92_028085 Vanilla planifolia HOM05D005140 ORTHO05D006288 1.1e-178 630.6 443 71.3
HPP92_022002 Vanilla planifolia HOM05D005140 ORTHO05D006288 2.4e-178 629.4 420 71.9
BcaC09g51625 Brassica carinata HOM05D005140 ORTHO05D006288 1.0e-176 624.0 441 68.0
BcaNung06713 Brassica carinata HOM05D005140 ORTHO05D006288 1.3e-176 623.6 398 73.4
AUR62007191 Chenopodium quinoa HOM05D005140 ORTHO05D006288 2.5e-175 619.4 380 77.6
ATR0665G273 Amborella trichopoda HOM05D005140 ORTHO05D006288 4.3e-175 618.6 520 68.8
MBI04_g38568_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 7.3e-175 617.8 395 75.9
Aa31LG9G15140 Aethionema arabicum HOM05D005140 ORTHO05D006288 1.2e-169 600.5 423 67.8
CDE04G2928 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 1.6e-169 600.1 399 73.9
Lj9A525T29 Lonicera japonica HOM05D005140 ORTHO05D006288 5.1e-168 595.1 385 75.3
Lj2C253G13 Lonicera japonica HOM05D005140 ORTHO05D006288 2.4e-165 586.3 463 65.0
SGA_v2.0_scaffold6G03141 Striga asiatica HOM05D005140 ORTHO05D006288 1.2e-164 583.9 390 74.4
THA.LOC104814458 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 1.2e-164 583.9 424 67.0
VMungo0239G0001 Vigna mungo HOM05D005140 ORTHO05D006288 2.1e-161 573.2 315 85.4
AUR62018812 Chenopodium quinoa HOM05D005140 ORTHO05D006288 1.5e-159 567.0 306 84.6
MBI04_g46822_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 1.7e-155 553.5 347 76.4
Sc01g0007900 Simmondsia chinensis HOM05D005140 ORTHO05D006288 6.0e-153 545.0 323 79.9
Os05g0392100 Oryza sativa ssp. japonica HOM05D005140 ORTHO05D006288 3.1e-141 506.1 338 72.5
Hma1.2p1_1672F.1_g296780 Hydrangea macrophylla HOM05D005140 ORTHO05D006288 4.2e-138 495.7 327 74.0
GSVIVG01013283001 Vitis vinifera HOM05D005140 ORTHO05D006288 7.2e-138 495.0 451 59.4
Zm00001eb287280 Zea mays HOM05D005140 ORTHO05D006288 2.8e-134 483.0 293 78.5
Pp3c10_5020 Physcomitrium patens HOM05D005140 ORTHO05D006288 1.3e-126 457.6 452 54.0
AagrBONN_evm.TU.Sc2ySwM_344.2637 Anthoceros agrestis HOM05D005140 ORTHO05D006288 1.7e-126 457.2 417 56.1
SHI07711 Sapria himalayana HOM05D005140 ORTHO05D006288 2.9e-123 446.4 354 64.4
Mapoly0062s0029 Marchantia polymorpha HOM05D005140 ORTHO05D006288 8.8e-120 434.9 455 51.9
CDE12G0612 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 3.3e-119 433.0 322 65.8
BolC1t01096H Brassica oleracea HOM05D005140 ORTHO05D006288 4.5e-108 396.0 218 80.3
SMO259G0041 Selaginella moellendorffii HOM05D005140 ORTHO05D006288 7.7e-108 395.2 325 55.4
Oeu017029.1 Olea europaea HOM05D005140 ORTHO05D006288 3.1e-101 373.2 191 90.6
CBR_g48842 Chara braunii HOM05D005140 ORTHO05D006288 5.7e-95 352.4 429 48.7
Peaxi162Scf00715g00010 Petunia axillaris HOM05D005140 ORTHO05D006288 1.6e-89 334.3 234 70.9
Cpa.g.sc98.58 Carica papaya HOM05D005140 ORTHO05D006288 2.6e-87 327.0 259 64.9
QL12p008508 Quercus lobata HOM05D005140 ORTHO05D006288 7.8e-68 262.3 292 63.7
Oeu062963.3 Olea europaea HOM05D005140 ORTHO05D006288 8.7e-67 258.8 261 56.3
Psat1g146680 Pisum sativum HOM05D005140 ORTHO05D006288 4.3e-50 203.4 115 83.5
Oeu017031.1 Olea europaea HOM05D005140 ORTHO05D006288 5.8e-47 193.0 136 72.8
Thecc.03G238400 Theobroma cacao HOM05D005140 ORTHO05D006288 2.2e-46 191.0 170 64.7
Cpa.g.c32337.2 Carica papaya HOM05D005140 ORTHO05D006288 5.1e-35 153.3 118 69.5
MCO13G373 Micromonas commoda HOM05D005140 ORTHO05D006288 5.1e-35 153.3 291 34.7
SEGI_19334 Sequoiadendron giganteum HOM05D005140 ORTHO05D000001 5.0e-30 136.7 77 80.5
Cre07.g338400 Chlamydomonas reinhardtii HOM05D005140 ORTHO05D006288 3.0e-27 127.5 274 33.9
MD10G1199900 Malus domestica HOM05D005140 ORTHO05D006288 6.7e-27 126.3 79 77.2
GSVIVG01001794001 Vitis vinifera HOM05D005140 ORTHO05D006288 4.7e-20 103.6 80 62.5
Cfa024662 Carpinus fangiana HOM05D005140 ORTHO05D006288 7.9e-20 102.8 320 29.4
DCAR_016064 Daucus carota HOM05D005140 ORTHO05D006288 1.7e-14 85.1 52 71.2
QL12p008547 Quercus lobata HOM05D005140 ORTHO05D006288 1.3e-09 68.9 129 61.2
ECA233G4689 Erigeron canadensis HOM05D005140 ORTHO05D006288 2.8e-09 67.8 100 44.0
Gohir.A08G083762 Gossypium hirsutum HOM05D005140 ORTHO05D006288 2.8e-09 67.8 29 93.1
BolC1t01095H Brassica oleracea HOM05D005140 ORTHO05D006288 2.6e-07 61.2 47 59.6
Dinv25151 Davidia involucrata HOM05D005140 ORTHO05D006288 3.8e-06 57.4 44 61.4
Dinv00162 Davidia involucrata HOM05D005140 ORTHO05D006288 6.5e-06 56.6 77 41.6
Psat6g107920 Pisum sativum HOM05D032184 ORTHO05D330502 6.5e-06 56.6 28 89.3


User provided reference genes

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