Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C000330.2 Cucumis melo HOM05D000216 ORTHO05D000634 2.0e-95 352.4 178 100.0
Sed0000813 Sechium edule HOM05D000216 ORTHO05D000634 1.4e-88 329.7 178 94.9
Sed0017787 Sechium edule HOM05D000216 ORTHO05D000634 3.3e-82 308.5 166 94.6
RcHm_v2.0_CPg0502411 Rosa chinensis HOM05D000216 ORTHO05D000634 2.3e-80 302.4 178 84.8
PGR111G0086 Punica granatum HOM05D000216 ORTHO05D000634 2.7e-76 288.9 178 79.8
EL10As12g24016 Beta vulgaris HOM05D000216 ORTHO05D001131 1.9e-74 282.7 178 79.8
PSO548G0073 Papaver somniferum HOM05D000216 ORTHO05D000634 1.9e-74 282.7 178 79.2
Solyc00g500052.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.9e-74 282.7 178 77.5
Solyc00g500135.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.9e-74 282.7 178 77.5
Solyc00g500205.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.9e-74 282.7 178 77.5
Solyc00g500290.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.9e-74 282.7 178 77.5
Solyc00g500319.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.9e-74 282.7 178 77.5
CAN.G1648.10 Capsicum annuum HOM05D000216 ORTHO05D000634 2.5e-74 282.3 178 77.0
Lalb_Chr09g0335361 Lupinus albus HOM05D000216 ORTHO05D000634 4.3e-74 281.6 179 81.0
Hma1.2p1_0414F.1_g147670 Hydrangea macrophylla HOM05D000216 ORTHO05D000634 1.4e-72 276.6 178 78.1
LjContig00318g0011041 Lotus japonicus HOM05D000216 ORTHO05D000634 1.4e-72 276.6 179 77.7
Medtr4g051120 Medicago truncatula HOM05D000216 ORTHO05D000634 1.4e-72 276.6 178 75.3
DCAR_032474 Daucus carota HOM05D000216 ORTHO05D000634 1.8e-72 276.2 178 78.1
Potri.013G140260 Populus trichocarpa HOM05D000216 ORTHO05D000634 1.8e-72 276.2 178 76.4
Atru.chr2.3403 Acer truncatum HOM05D000216 ORTHO05D000634 3.1e-72 275.4 182 75.8
Ah.10g027600 Amaranthus hybridus HOM05D000216 ORTHO05D000634 1.5e-71 273.1 178 78.1
Ah.10g027800 Amaranthus hybridus HOM05D000216 ORTHO05D000634 1.5e-71 273.1 178 78.1
ATCG00170 Arabidopsis thaliana HOM05D000216 ORTHO05D000634 3.4e-71 271.9 178 77.5
unitig_91.g26496 Utricularia gibba HOM05D000216 ORTHO05D000634 1.7e-70 269.6 178 75.3
BNapus_Darmor_BZH_scaffold_253p00060 Brassica napus HOM05D000216 ORTHO05D000634 6.4e-70 267.7 178 74.2
BolSC29t60451H Brassica oleracea HOM05D000216 ORTHO05D000634 6.4e-70 267.7 178 74.2
BolSC45t60937H Brassica oleracea HOM05D000216 ORTHO05D000634 6.4e-70 267.7 178 74.2
BraSC58t46405Z Brassica rapa HOM05D000216 ORTHO05D000634 6.4e-70 267.7 178 74.2
BraSC143t45681Z Brassica rapa HOM05D000216 ORTHO05D000634 4.3e-66 255.0 165 75.8
ATR0187G001 Amborella trichopoda HOM05D000216 ORTHO05D000634 4.7e-65 251.5 149 83.2
Hund18043 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.0e-64 248.4 178 73.0
Hund27610 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.0e-64 248.4 178 73.0
Hund27866 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.0e-64 248.4 178 73.0
Hund28277 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.0e-64 248.4 178 73.0
Hund28387 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.0e-64 248.4 178 73.0
Hund28793 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.0e-64 248.4 178 73.0
Hund29352 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.0e-64 248.4 178 73.0
CiPaw.12G031000 Carya illinoinensis HOM05D000216 ORTHO05D000634 6.9e-64 247.7 179 71.5
Nn3g18112 Nelumbo nucifera HOM05D000216 ORTHO05D000634 8.4e-62 240.7 155 78.7
Hund27560 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.4e-61 240.0 178 72.5
Hund28559 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.7e-59 233.0 178 70.8
LjContig00489g0015528 Lotus japonicus HOM05D000216 ORTHO05D000634 3.6e-57 225.3 178 66.9
SGA_v2.0_scaffold119G32689 Striga asiatica HOM05D000216 ORTHO05D000634 6.9e-56 221.1 151 72.2
Lj2C1238G20 Lonicera japonica HOM05D000216 ORTHO05D000634 2.6e-55 219.2 148 75.0
Hund27996 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.3e-51 206.8 150 71.3
Hund29740 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.3e-51 206.8 150 71.3
ClCG07G007330 Citrullus lanatus HOM05D000216 ORTHO05D000634 3.0e-51 205.7 178 65.7
HanXRQChr08g0210181 Helianthus annuus HOM05D000216 ORTHO05D000634 4.3e-50 201.8 180 63.9
HanXRQChr11g0326611 Helianthus annuus HOM05D000216 ORTHO05D000634 4.3e-50 201.8 180 63.9
HanXRQCPg0579801 Helianthus annuus HOM05D000216 ORTHO05D001131 4.3e-50 201.8 180 63.9
Hund25862 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.6e-49 199.9 178 63.5
Zm00001eb436830 Zea mays HOM05D000216 ORTHO05D000634 2.1e-49 199.5 179 60.3
Lsat_1_v5_gn_5_26601 Lactuca sativa HOM05D000216 ORTHO05D000634 2.0e-47 193.0 180 61.7
MSTRG.17791 Avicennia marina HOM05D000216 ORTHO05D000634 2.6e-47 192.6 124 74.2
Medtr0002s0510 Medicago truncatula HOM05D000216 ORTHO05D001131 7.6e-47 191.0 179 57.5
Hund15943 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.9e-46 188.3 178 62.4
arahy.Tifrunner.gnm1.ann1.N383GM Arachis hypogaea HOM05D000216 ORTHO05D000634 1.2e-44 183.7 119 76.5
Zm00001eb271610 Zea mays HOM05D000216 ORTHO05D000634 4.6e-44 181.8 179 57.5
Migut.D01341 Erythranthe guttata HOM05D000216 ORTHO05D000634 2.5e-42 176.0 178 56.2
Hund03956 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.6e-41 173.3 129 70.5
HanXRQChr14g0436641 Helianthus annuus HOM05D000216 ORTHO05D000634 4.0e-40 168.7 178 57.3
Lj2C1237G1 Lonicera japonica HOM05D000216 ORTHO05D000634 2.6e-39 166.0 118 72.0
Hund07969 Selenicereus undatus HOM05D000216 ORTHO05D000634 9.3e-37 157.5 122 68.9
Hund31462 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.6e-36 156.8 122 68.9
ClCG01G011270 Citrullus lanatus HOM05D000216 ORTHO05D000634 1.3e-33 147.1 160 56.9
Nitab4.5_0000172g0280 Nicotiana tabacum HOM05D000216 ORTHO05D000634 6.9e-32 141.4 92 73.9
Lalb_Chr06g0173011 Lupinus albus HOM05D000216 ORTHO05D000634 4.6e-28 128.6 90 72.2
Thhalv10023328m.g Eutrema salsugineum HOM05D000216 ORTHO05D000634 6.1e-28 128.3 86 72.1
arahy.Tifrunner.gnm1.ann1.8W122S Arachis hypogaea HOM05D000216 ORTHO05D000634 1.0e-27 127.5 178 47.2
CsaV3_UNG207810 Cucumis sativus L. HOM05D000216 ORTHO05D000634 3.0e-27 125.9 62 98.4
Peaxi162Scf00348g01211 Petunia axillaris HOM05D000216 ORTHO05D000634 1.5e-26 123.6 86 70.9
arahy.Tifrunner.gnm1.ann1.F2PHFK Arachis hypogaea HOM05D000890 ORTHO05D000697 4.1e-24 115.5 107 57.0
HanXRQChr00c0300g0573181 Helianthus annuus HOM05D000216 ORTHO05D000634 1.5e-23 113.6 90 68.9
Nitab4.5_0001761g0170 Nicotiana tabacum HOM05D000216 ORTHO05D000634 7.7e-23 111.3 109 55.0
Sed0025233 Sechium edule HOM05D000216 ORTHO05D001131 1.0e-22 110.9 58 91.4
Medtr5g071320 Medicago truncatula HOM05D000216 ORTHO05D000634 1.7e-22 110.2 75 70.7
BraSC140t45608Z Brassica rapa HOM05D000216 ORTHO05D000634 2.2e-22 109.8 74 70.3
SGA_v2.0_scaffold132G34498 Striga asiatica HOM05D000216 ORTHO05D000634 6.5e-22 108.2 65 75.4
HanXRQChr00c0313g0573471 Helianthus annuus HOM05D000216 ORTHO05D000634 1.2e-20 104.0 89 65.2
Ah.10g028500 Amaranthus hybridus HOM05D000216 ORTHO05D000634 3.6e-20 102.4 60 81.7
Lj2C1239T72 Lonicera japonica HOM05D000216 ORTHO05D000634 6.1e-20 101.7 62 79.0
BraSC151t45695Z Brassica rapa HOM05D000216 ORTHO05D000634 7.9e-20 101.3 85 65.9
Lj2C1239G21 Lonicera japonica HOM05D000216 ORTHO05D000634 2.3e-19 99.8 60 80.0
Medtr3g450720 Medicago truncatula HOM05D000216 ORTHO05D000634 5.1e-19 98.6 58 81.0
HanXRQChr03g0073111 Helianthus annuus HOM05D000216 ORTHO05D000634 5.7e-18 95.1 97 55.7
Lalb_Chr23g0274581 Lupinus albus HOM05D000216 ORTHO05D000634 7.4e-18 94.7 72 65.3
Nn4g23967 Nelumbo nucifera HOM05D000216 ORTHO05D000634 7.4e-18 94.7 55 85.5
HanXRQChr10g0282531 Helianthus annuus HOM05D000216 ORTHO05D000634 3.4e-15 85.9 77 63.6
Medtr7g116700 Medicago truncatula HOM05D000216 ORTHO05D000634 3.4e-15 85.9 55 72.7
Hund12594 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.9e-14 82.8 113 45.1
Zm00001eb226410 Zea mays HOM05D000216 ORTHO05D000634 2.9e-14 82.8 73 56.2
Zm00001eb314280 Zea mays HOM05D000216 ORTHO05D000634 2.9e-14 82.8 73 56.2
Zm00001eb434960 Zea mays HOM05D000216 ORTHO05D000634 2.9e-14 82.8 73 56.2
Zm00001eb435270 Zea mays HOM05D000216 ORTHO05D000634 2.9e-14 82.8 73 56.2
Zm00001eb435480 Zea mays HOM05D000216 ORTHO05D000634 2.9e-14 82.8 73 56.2
Zm00001eb435750 Zea mays HOM05D000216 ORTHO05D000634 2.9e-14 82.8 73 56.2
Zm00001eb437130 Zea mays HOM05D000216 ORTHO05D000634 2.9e-14 82.8 73 56.2
Zm00001eb437260 Zea mays HOM05D000216 ORTHO05D000634 2.9e-14 82.8 73 56.2
Zm00001eb437780 Zea mays HOM05D000216 ORTHO05D000634 2.9e-14 82.8 73 56.2
Zm00001eb438310 Zea mays HOM05D000216 ORTHO05D000634 2.9e-14 82.8 73 56.2
Hund04024 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.0e-10 70.1 106 47.2
Nitab4.5_0004184g0070 Nicotiana tabacum HOM05D000216 ORTHO05D000634 4.8e-09 65.5 46 67.4
Aa31csc39G130 Aethionema arabicum HOM05D000216 ORTHO05D000634 1.8e-08 63.5 134 37.3
Solyc06g074600.2 Solanum lycopersicum HOM05D000216 ORTHO05D000634 9.1e-08 61.2 37 81.1
SalBow1G4778 Salvia bowleyana HOM05D000216 ORTHO05D001131 5.9e-07 58.5 37 70.3


User provided reference genes

Program Settings