Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD17G1258300 Malus domestica HOM05D006375 ORTHO05D008188 0.0e+00 1793.9 910 100.0
Prupe.3G161000 Prunus persica HOM05D006375 ORTHO05D008188 0.0e+00 1233.0 929 71.7
RcHm_v2.0_Chr3g0493161 Rosa chinensis HOM05D006375 ORTHO05D008188 0.0e+00 1182.2 945 67.9
FvH4_1g28770 Fragaria vesca HOM05D006375 ORTHO05D008188 0.0e+00 1111.3 961 63.6
FAN19G0463 Fragaria x ananassa HOM05D006375 ORTHO05D008188 0.0e+00 1099.0 972 62.7
Cfa007814 Carpinus fangiana HOM05D006375 ORTHO05D008188 0.0e+00 1094.0 969 62.4
FAN23G0218 Fragaria x ananassa HOM05D006375 ORTHO05D008188 0.0e+00 1094.0 995 61.4
QL02p058134 Quercus lobata HOM05D006375 ORTHO05D008188 0.0e+00 1085.5 962 62.2
QL93p0100_0515 Quercus lobata HOM05D006375 ORTHO05D008188 0.0e+00 1078.9 961 61.7
Haze_14261 Corylus avellana HOM05D006375 ORTHO05D008188 1.2e-308 1063.1 1024 59.1
CANSAT64G0280 Cannabis sativa HOM05D006375 ORTHO05D008188 1.7e-296 1022.7 971 58.6
LjContig00141g0022245 Lotus japonicus HOM05D006375 ORTHO05D008188 3.3e-271 938.7 929 58.9
Thecc.04G114800 Theobroma cacao HOM05D006375 ORTHO05D008188 5.6e-271 937.9 980 56.1
Actinidia06495 Actinidia chinensis HOM05D006375 ORTHO05D008188 2.1e-270 936.0 995 54.2
Potri.004G087400 Populus trichocarpa HOM05D006375 ORTHO05D008188 1.8e-269 932.9 979 55.8
CiPaw.03G071800 Carya illinoinensis HOM05D006375 ORTHO05D008188 1.2e-268 930.2 948 56.5
VMungo0647G2002 Vigna mungo HOM05D006375 ORTHO05D008188 5.8e-268 927.9 928 57.8
Glyma.14G214000 Glycine max HOM05D006375 ORTHO05D008188 1.4e-266 923.3 930 56.7
CSS0034734 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 2.1e-265 919.5 905 56.7
Ciclev10010990m.g Citrus clementina HOM05D006375 ORTHO05D008188 3.9e-264 915.2 962 55.8
Lalb_Chr04g0251361 Lupinus albus HOM05D006375 ORTHO05D008188 3.3e-263 912.1 930 56.3
Hma1.2p1_0158F.1_g070200 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 9.6e-263 910.6 850 58.9
Sabra04G0058300 Salix brachista HOM05D006375 ORTHO05D008188 9.6e-263 910.6 931 56.1
arahy.Tifrunner.gnm1.ann1.WVM8AG Arachis hypogaea HOM05D006375 ORTHO05D008188 6.2e-262 907.9 926 55.8
TAR374G0480 Trochodendron aralioides HOM05D006375 ORTHO05D008188 6.2e-262 907.9 978 54.1
Lj4C263T11 Lonicera japonica HOM05D006375 ORTHO05D008188 5.8e-260 901.4 968 54.1
TPR.G8261 Trifolium pratense HOM05D006375 ORTHO05D008188 1.0e-259 900.6 921 56.6
Atru.chr1.1908 Acer truncatum HOM05D006375 ORTHO05D008188 4.9e-259 898.3 961 54.2
Rhsim10G0177200 Rhododendron simsii HOM05D006375 ORTHO05D008188 6.5e-259 897.9 958 52.6
arahy.Tifrunner.gnm1.ann1.EH3TRU Arachis hypogaea HOM05D006375 ORTHO05D008188 1.1e-258 897.1 942 54.7
Manes.01G118300 Manihot esculenta HOM05D006375 ORTHO05D008188 2.5e-258 896.0 879 57.2
Medtr5g078360 Medicago truncatula HOM05D006375 ORTHO05D008188 4.6e-257 891.7 927 56.1
Sed0006511 Sechium edule HOM05D006375 ORTHO05D008188 3.0e-256 889.0 963 52.9
CsaV3_5G024160 Cucumis sativus L. HOM05D006375 ORTHO05D008188 5.7e-255 884.8 949 53.2
TWI53G2003 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 5.7e-255 884.8 933 55.0
GSVIVG01030782001 Vitis vinifera HOM05D006375 ORTHO05D008188 9.6e-255 884.0 950 54.1
Nn3g18305 Nelumbo nucifera HOM05D006375 ORTHO05D008188 1.1e-253 880.6 924 53.5
Nitab4.5_0000201g0170 Nicotiana tabacum HOM05D006375 ORTHO05D008188 9.0e-253 877.5 923 54.1
Gohir.A07G078100 Gossypium hirsutum HOM05D006375 ORTHO05D008188 4.5e-252 875.2 1002 52.8
Phvul.008G233100 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 9.3e-250 867.5 926 54.8
PGSC0003DMG400015671 Solanum tuberosum HOM05D006375 ORTHO05D008188 9.3e-250 867.5 922 53.4
Nitab4.5_0010112g0040 Nicotiana tabacum HOM05D006375 ORTHO05D008188 3.5e-249 865.5 945 52.7
TWI74G0084 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 1.0e-248 864.0 895 54.9
Sopen11g005910 Solanum pennellii HOM05D006375 ORTHO05D008188 5.7e-247 858.2 922 52.6
Solyc11g011150.2 Solanum lycopersicum HOM05D006375 ORTHO05D008188 1.6e-246 856.7 922 52.5
vmacro07694 Vaccinium macrocarpon HOM05D006375 ORTHO05D008188 4.8e-246 855.1 973 51.6
MELO3C022863.2 Cucumis melo HOM05D006375 ORTHO05D008188 2.4e-245 852.8 944 52.2
Gorai.001G088500 Gossypium raimondii HOM05D006375 ORTHO05D008188 2.6e-244 849.4 856 56.5
COL.COLO4_05994 Corchorus olitorius HOM05D006375 ORTHO05D008188 8.5e-243 844.3 978 52.5
Gohir.D07G082900 Gossypium hirsutum HOM05D006375 ORTHO05D008188 1.1e-242 844.0 1004 50.9
Psat2g047400 Pisum sativum HOM05D006375 ORTHO05D008188 1.4e-242 843.6 826 56.8
Cpa.g.sc116.55 Carica papaya HOM05D006375 ORTHO05D008188 4.2e-242 842.0 958 52.3
HanXRQChr14g0444701 Helianthus annuus HOM05D006375 ORTHO05D008188 1.2e-241 840.5 948 51.6
DCAR_003431 Daucus carota HOM05D006375 ORTHO05D008188 3.6e-241 839.0 946 52.7
ClCG01G008800 Citrullus lanatus HOM05D006375 ORTHO05D008188 6.1e-241 838.2 948 52.2
ECA238G1164 Erigeron canadensis HOM05D006375 ORTHO05D008188 5.3e-237 825.1 937 50.1
Sc14g0006560 Simmondsia chinensis HOM05D006375 ORTHO05D008188 1.9e-234 816.6 963 51.0
PSO478G2715 Papaver somniferum HOM05D006375 ORTHO05D008188 3.2e-234 815.8 921 50.3
THA.LOC104827188 Tarenaya hassleriana HOM05D006375 ORTHO05D008188 5.1e-232 808.5 940 50.5
PSO017G5819 Papaver somniferum HOM05D006375 ORTHO05D008188 2.6e-231 806.2 918 50.0
Aqoxy3G00081 Aquilegia oxysepala HOM05D006375 ORTHO05D008188 4.4e-231 805.4 925 49.7
SGA_v2.0_scaffold2G00936 Striga asiatica HOM05D006375 ORTHO05D008188 2.8e-230 802.7 933 50.3
Cc07_g13460 Coffea canephora HOM05D006375 ORTHO05D008188 4.8e-230 802.0 927 50.2
Hund04476 Selenicereus undatus HOM05D006375 ORTHO05D008188 5.9e-228 795.0 880 52.3
AUR62003604 Chenopodium quinoa HOM05D006375 ORTHO05D008188 3.8e-227 792.3 844 52.8
EL10Ac6g15274 Beta vulgaris HOM05D006375 ORTHO05D008188 4.2e-226 788.9 856 51.8
SalBow3G0693 Salvia bowleyana HOM05D006375 ORTHO05D008188 4.7e-225 785.4 951 49.2
AUR62017915 Chenopodium quinoa HOM05D006375 ORTHO05D008188 1.0e-224 784.3 818 54.2
MSTRG.2615 Avicennia marina HOM05D006375 ORTHO05D008188 8.8e-224 781.2 939 49.1
PGR004G2253 Punica granatum HOM05D006375 ORTHO05D008188 8.8e-224 781.2 934 49.8
AL6G27600 Arabidopsis lyrata HOM05D006375 ORTHO05D008188 2.8e-222 776.2 926 49.7
Aa31LG11G13020 Aethionema arabicum HOM05D006375 ORTHO05D008188 6.3e-222 775.0 970 47.8
Thhalv10012651m.g Eutrema salsugineum HOM05D006375 ORTHO05D008188 2.2e-219 766.5 949 48.3
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 1.0e-216 757.7 931 48.7
Carub.0006s1484 Capsella rubella HOM05D006375 ORTHO05D008188 1.0e-216 757.7 922 48.9
CARHR196570 Cardamine hirsuta HOM05D006375 ORTHO05D008188 3.0e-216 756.1 927 49.5
AT5G16630 Arabidopsis thaliana HOM05D006375 ORTHO05D008188 1.5e-215 753.8 928 49.1
Hma1.2p1_0158F.1_g070190 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 9.8e-215 751.1 738 56.9
Migut.H02262 Erythranthe guttata HOM05D006375 ORTHO05D008188 2.8e-214 749.6 828 52.1
Sp6g27540 Schrenkiella parvula HOM05D006375 ORTHO05D008188 2.8e-214 749.6 939 47.6
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 1.6e-212 743.8 954 47.4
ATR0564G422 Amborella trichopoda HOM05D006375 ORTHO05D008188 6.5e-211 738.4 881 49.9
CSS0009955 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 9.4e-210 734.6 716 56.8
CAN.G222.25 Capsicum annuum HOM05D006375 ORTHO05D008188 3.6e-209 732.6 835 51.7
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 8.0e-209 731.5 935 47.4
BraA02t05338Z Brassica rapa HOM05D006375 ORTHO05D008188 1.8e-208 730.3 935 47.6
BolC2t06767H Brassica oleracea HOM05D006375 ORTHO05D000255 8.3e-206 721.5 974 46.3
Lsat_1_v5_gn_2_69340 Lactuca sativa HOM05D006375 ORTHO05D008188 2.0e-204 716.8 919 47.6
CDE05G1980 Ceratophyllum demersum HOM05D006375 ORTHO05D008188 3.5e-204 716.1 893 47.6
Zm00001eb041880 Zea mays HOM05D006375 ORTHO05D008188 3.3e-202 709.5 929 46.8
Phvul.010G024866 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 5.6e-202 708.8 688 57.6
Ah.02g121850 Amaranthus hybridus HOM05D006375 ORTHO05D008188 6.1e-201 705.3 858 49.3
Os08g0427500 Oryza sativa ssp. japonica HOM05D006375 ORTHO05D008188 1.4e-200 704.1 878 48.2
HPP92_024778 Vanilla planifolia HOM05D006375 ORTHO05D008188 1.2e-196 691.0 1003 42.8
Peaxi162Scf00305g00616 Petunia axillaris HOM05D006375 ORTHO05D008188 3.0e-187 659.8 680 53.8
MBI19_g34823_MAGBIO Magnolia biondii HOM05D006375 ORTHO05D008188 3.6e-177 626.3 626 55.0
SEGI_37856 Sequoiadendron giganteum HOM05D006375 ORTHO05D008188 5.8e-175 619.0 1001 41.7
Eucgr.F02852 Eucalyptus grandis HOM05D006375 ORTHO05D008188 5.4e-173 612.5 670 52.4
unitig_899.g14571 Utricularia gibba HOM05D006375 ORTHO05D008188 1.2e-172 611.3 847 44.9
Dinv28205 Davidia involucrata HOM05D006375 ORTHO05D008188 1.3e-171 607.8 706 52.3
SHI25352 Sapria himalayana HOM05D006375 ORTHO05D008188 4.4e-167 592.8 685 50.2
FAN26G3226 Fragaria x ananassa HOM05D006375 ORTHO05D008188 5.6e-154 549.3 478 61.7
SMO139G0070 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 3.5e-148 530.0 910 39.3
SMO157G0011 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 2.4e-144 517.3 918 38.5
Pp3c22_7360 Physcomitrium patens HOM05D006375 ORTHO05D008188 1.5e-143 514.6 1018 35.1
Mapoly0069s0010 Marchantia polymorpha HOM05D006375 ORTHO05D008188 6.5e-134 482.6 976 35.0
AagrBONN_evm.TU.Sc2ySwM_340.97 Anthoceros agrestis HOM05D006375 ORTHO05D008188 3.4e-127 460.3 905 37.6
CBR_g3816 Chara braunii HOM05D006375 ORTHO05D008188 6.5e-110 402.9 1036 30.6
Ca_22495_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 3.0e-99 367.5 303 62.4
Ca_22493_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 1.4e-72 278.9 908 29.3
PRCOL_00001710 Prasinoderma coloniale HOM05D006375 ORTHO05D008188 1.4e-48 199.1 833 23.9
Haze_27154 Corylus avellana HOM05D006375 ORTHO05D008188 1.1e-45 189.5 370 33.0
MCO12G035 Micromonas commoda HOM05D006375 ORTHO05D008188 5.6e-45 187.2 415 29.9
Peaxi162Scf00305g00615 Petunia axillaris HOM05D006375 ORTHO05D008188 6.4e-41 173.7 253 43.9
FAN26G2035 Fragaria x ananassa HOM05D006375 ORTHO05D008188 2.5e-37 161.8 179 53.1
Cfa025272 Carpinus fangiana HOM05D006375 ORTHO05D008188 1.5e-29 136.0 409 24.7
Nn2g13217 Nelumbo nucifera HOM05D006375 ORTHO05D008188 1.5e-26 125.9 100 60.0
Cre12.g557400 Chlamydomonas reinhardtii HOM05D006375 ORTHO05D008188 3.2e-24 118.2 311 29.3
Cfa024716 Carpinus fangiana HOM05D006375 ORTHO05D008188 4.3e-21 107.8 394 25.4
CAN.G222.26 Capsicum annuum HOM05D006375 ORTHO05D008188 1.6e-20 105.9 200 38.5
SHI25356 Sapria himalayana HOM05D006375 ORTHO05D008188 5.5e-16 90.9 85 55.3
COL.COLO4_05996 Corchorus olitorius HOM05D006375 ORTHO05D000012 1.4e-14 86.3 108 44.4


User provided reference genes

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