Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1018800 Malus domestica HOM05D001486 ORTHO05D004921 8.5e-117 423.7 218 100.0
MD13G1020400 Malus domestica HOM05D001486 ORTHO05D004921 4.4e-113 411.4 218 97.7
Prupe.1G333300 Prunus persica HOM05D001486 ORTHO05D004921 6.6e-109 397.5 218 93.1
QL03p035815 Quercus lobata HOM05D001486 ORTHO05D004921 7.0e-103 377.5 217 89.4
GSVIVG01011662001 Vitis vinifera HOM05D001486 ORTHO05D004921 1.6e-102 376.3 217 88.9
Manes.17G083900 Manihot esculenta HOM05D001486 ORTHO05D004921 2.7e-102 375.6 218 88.1
Dinv10475 Davidia involucrata HOM05D001486 ORTHO05D004921 4.6e-102 374.8 215 89.8
Thecc.02G292500 Theobroma cacao HOM05D001486 ORTHO05D004921 1.0e-101 373.6 218 86.2
Potri.008G134800 Populus trichocarpa HOM05D001486 ORTHO05D004921 1.3e-101 373.2 218 86.7
CiPaw.06G051900 Carya illinoinensis HOM05D001486 ORTHO05D004921 1.7e-101 372.9 215 89.3
Atru.chr11.925 Acer truncatum HOM05D001486 ORTHO05D004921 3.9e-101 371.7 218 87.2
COL.COLO4_16588 Corchorus olitorius HOM05D001486 ORTHO05D004921 3.9e-101 371.7 218 86.2
CANSAT01G0610 Cannabis sativa HOM05D001486 ORTHO05D004921 5.0e-101 371.3 218 87.6
Actinidia36627 Actinidia chinensis HOM05D001486 ORTHO05D004921 2.5e-100 369.0 218 86.7
Nn4g24372 Nelumbo nucifera HOM05D001486 ORTHO05D004921 2.5e-100 369.0 218 85.8
FAN17G1739 Fragaria x ananassa HOM05D001486 ORTHO05D004921 3.3e-100 368.6 218 86.7
RcHm_v2.0_Chr4g0443061 Rosa chinensis HOM05D001486 ORTHO05D004921 3.3e-100 368.6 218 86.7
Ciclev10014036m.g Citrus clementina HOM05D001486 ORTHO05D004921 5.6e-100 367.9 218 85.8
CSS0037038 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 1.6e-99 366.3 214 87.4
FvH4_4g33560 Fragaria vesca HOM05D001486 ORTHO05D004921 3.6e-99 365.2 218 86.2
FAN12G0503 Fragaria x ananassa HOM05D001486 ORTHO05D004921 3.6e-99 365.2 218 86.2
FAN22G2372 Fragaria x ananassa HOM05D001486 ORTHO05D004921 3.6e-99 365.2 218 86.2
Lj3A864G85 Lonicera japonica HOM05D001486 ORTHO05D004921 3.6e-99 365.2 218 85.8
Cc04_g10510 Coffea canephora HOM05D001486 ORTHO05D004921 2.3e-98 362.5 218 86.2
MSTRG.2128 Avicennia marina HOM05D001486 ORTHO05D004921 3.1e-98 362.1 218 84.4
vmacro10693 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 5.2e-98 361.3 218 84.4
Gohir.D02G139700 Gossypium hirsutum HOM05D001486 ORTHO05D004921 8.9e-98 360.5 218 84.9
Gohir.A03G115400 Gossypium hirsutum HOM05D001486 ORTHO05D004921 2.0e-97 359.4 218 84.4
Rhsim09G0089500 Rhododendron simsii HOM05D001486 ORTHO05D004921 2.0e-97 359.4 218 84.4
TWI74G0959 Tripterygium wilfordii HOM05D001486 ORTHO05D004921 2.0e-97 359.4 218 82.6
Gorai.005G157100 Gossypium raimondii HOM05D001486 ORTHO05D004921 2.6e-97 359.0 217 84.3
Duzib268G0355 Durio zibethinus HOM05D001486 ORTHO05D004921 5.8e-97 357.8 218 83.9
Cpa.g.sc2.194 Carica papaya HOM05D001486 ORTHO05D004921 8.3e-96 354.0 218 83.5
Eucgr.G02106 Eucalyptus grandis HOM05D001486 ORTHO05D004921 1.1e-95 353.6 218 84.4
Sabra08G0102800 Salix brachista HOM05D001486 ORTHO05D004921 1.4e-95 353.2 241 76.8
Solyc07g008160.3 Solanum lycopersicum HOM05D001486 ORTHO05D004921 1.4e-95 353.2 218 82.1
FAN07G1595 Fragaria x ananassa HOM05D001486 ORTHO05D004921 3.2e-95 352.1 208 87.0
SalBow2G2685 Salvia bowleyana HOM05D001486 ORTHO05D004921 4.1e-95 351.7 218 82.6
Migut.E00481 Erythranthe guttata HOM05D001486 ORTHO05D004921 5.4e-95 351.3 218 82.6
CAN.G149.16 Capsicum annuum HOM05D001486 ORTHO05D004921 9.2e-95 350.5 218 81.2
Sopen07g004030 Solanum pennellii HOM05D001486 ORTHO05D004921 1.6e-94 349.7 218 81.7
Duzib251G0538 Durio zibethinus HOM05D001486 ORTHO05D004921 2.0e-94 349.4 218 82.1
Oeu064208.1 Olea europaea HOM05D001486 ORTHO05D004921 4.6e-94 348.2 218 81.2
CAN.G601.2 Capsicum annuum HOM05D001486 ORTHO05D004921 7.8e-94 347.4 214 82.2
Hund13366 Selenicereus undatus HOM05D001486 ORTHO05D004921 3.9e-93 345.1 218 81.2
PGR142G2431 Punica granatum HOM05D001486 ORTHO05D004921 8.6e-93 344.0 218 83.5
PSO063G3102 Papaver somniferum HOM05D001486 ORTHO05D004921 1.5e-92 343.2 215 80.9
Hma1.2p1_0277F.1_g111740 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 1.9e-92 342.8 238 76.9
PSO782G0822 Papaver somniferum HOM05D001486 ORTHO05D004921 4.3e-92 341.7 213 81.2
arahy.Tifrunner.gnm1.ann1.WZE3XK Arachis hypogaea HOM05D001486 ORTHO05D004921 9.5e-92 340.5 218 79.4
SGA_v2.0_scaffold23G10214 Striga asiatica HOM05D001486 ORTHO05D004921 1.2e-91 340.1 214 81.3
Actinidia12394 Actinidia chinensis HOM05D001486 ORTHO05D004921 1.6e-91 339.7 201 86.1
Sed0010499 Sechium edule HOM05D001486 ORTHO05D004921 4.7e-91 338.2 218 77.1
TAR629G0795 Trochodendron aralioides HOM05D001486 ORTHO05D004921 1.1e-90 337.0 218 83.0
ECA233G0786 Erigeron canadensis HOM05D001486 ORTHO05D004921 1.8e-90 336.3 218 78.9
Ca_17277_v3 Cicer arietinum L. HOM05D001486 ORTHO05D004921 2.3e-90 335.9 219 79.5
Psat7g007960 Pisum sativum HOM05D001486 ORTHO05D004921 3.1e-90 335.5 218 77.5
HanXRQChr08g0212501 Helianthus annuus HOM05D001486 ORTHO05D004921 1.2e-89 333.6 218 78.0
Medtr8g105290 Medicago truncatula HOM05D001486 ORTHO05D004921 1.5e-89 333.2 218 77.1
TPR.G19252 Trifolium pratense HOM05D001486 ORTHO05D004921 2.6e-89 332.4 218 77.1
Aqoxy3G03310 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 3.4e-89 332.0 208 84.1
Glyma.08G045900 Glycine max HOM05D001486 ORTHO05D004921 4.4e-89 331.6 219 78.5
Lalb_Chr09g0330891 Lupinus albus HOM05D001486 ORTHO05D004921 4.4e-89 331.6 218 77.5
ATR0753G157 Amborella trichopoda HOM05D001486 ORTHO05D004921 9.8e-89 330.5 214 76.6
arahy.Tifrunner.gnm1.ann1.FK3VI9 Arachis hypogaea HOM05D001486 ORTHO05D004921 9.8e-89 330.5 208 80.8
VMungo0251G0466 Vigna mungo HOM05D001486 ORTHO05D004921 4.9e-88 328.2 219 77.2
CsaV3_5G015740 Cucumis sativus L. HOM05D001486 ORTHO05D004921 8.3e-88 327.4 218 74.8
Glyma.05G238800 Glycine max HOM05D001486 ORTHO05D004921 8.3e-88 327.4 218 77.1
Aqoxy7G03241 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 1.1e-87 327.0 208 83.2
Sc11g0004180 Simmondsia chinensis HOM05D001486 ORTHO05D004921 1.4e-87 326.6 220 75.5
Phvul.002G321200 Phaseolus vulgaris HOM05D001486 ORTHO05D004921 1.9e-87 326.2 219 77.2
EL10Ac3g06288 Beta vulgaris HOM05D001486 ORTHO05D004921 5.4e-87 324.7 218 78.0
ClCG07G005610 Citrullus lanatus HOM05D001486 ORTHO05D004921 5.4e-87 324.7 208 77.4
Lj4g0010019 Lotus japonicus HOM05D001486 ORTHO05D004921 4.6e-86 321.6 218 76.1
MELO3C026441.2 Cucumis melo HOM05D001486 ORTHO05D004921 1.7e-85 319.7 217 73.3
AL1G26870 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 8.6e-85 317.4 214 75.7
AT1G14850 Arabidopsis thaliana HOM05D001486 ORTHO05D004921 8.6e-85 317.4 214 74.3
Ah.13g072990 Amaranthus hybridus HOM05D001486 ORTHO05D004921 1.5e-84 316.6 218 77.1
Lalb_Chr05g0222211 Lupinus albus HOM05D001486 ORTHO05D004921 1.5e-84 316.6 218 73.9
Sp1g13290 Schrenkiella parvula HOM05D001486 ORTHO05D004921 1.2e-83 313.5 214 73.8
unitig_27.g25159 Utricularia gibba HOM05D001486 ORTHO05D004921 6.2e-83 311.2 218 71.6
CARHR015390 Cardamine hirsuta HOM05D001486 ORTHO05D004921 8.1e-83 310.8 214 74.3
BcaB02g06554 Brassica carinata HOM05D001486 ORTHO05D004921 3.1e-82 308.9 214 73.4
BcaC07g41534 Brassica carinata HOM05D001486 ORTHO05D004921 5.2e-82 308.1 215 74.0
BcaB08g34420 Brassica carinata HOM05D001486 ORTHO05D004921 6.8e-82 307.8 215 74.0
BcaC05g25406 Brassica carinata HOM05D001486 ORTHO05D004921 6.8e-82 307.8 214 72.9
Thhalv10006562m.g Eutrema salsugineum HOM05D001486 ORTHO05D004921 2.6e-81 305.8 214 73.4
Carub.0001s1464 Capsella rubella HOM05D001486 ORTHO05D004921 3.4e-81 305.4 214 72.4
A09p61750 Brassica napus HOM05D001486 ORTHO05D004921 9.9e-81 303.9 222 71.6
C08p45360 Brassica napus HOM05D001486 ORTHO05D004921 1.3e-80 303.5 225 70.7
BolC8t52091H Brassica oleracea HOM05D001486 ORTHO05D004921 8.4e-80 300.8 223 71.3
BraA09t41545Z Brassica rapa HOM05D001486 ORTHO05D004921 8.4e-80 300.8 226 69.9
C05p12830 Brassica napus HOM05D001486 ORTHO05D004921 1.4e-79 300.1 224 70.1
DCAR_007329 Daucus carota HOM05D001486 ORTHO05D004921 1.4e-79 300.1 218 72.9
BolC5t30028H Brassica oleracea HOM05D001486 ORTHO05D004921 1.9e-79 299.7 224 69.6
A06p10890 Brassica napus HOM05D001486 ORTHO05D004921 2.1e-78 296.2 224 69.2
BraA06t24267Z Brassica rapa HOM05D001486 ORTHO05D004921 2.1e-78 296.2 224 69.2
HPP92_002282 Vanilla planifolia HOM05D001486 ORTHO05D004921 5.1e-77 291.6 201 71.1
Os06g0305200 Oryza sativa ssp. japonica HOM05D001486 ORTHO05D004921 1.9e-76 289.7 208 70.7
SEGI_06977 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 1.9e-76 289.7 214 67.3
Zm00001eb009110 Zea mays HOM05D001486 ORTHO05D004921 5.6e-76 288.1 212 68.9
Lsat_1_v5_gn_8_46521 Lactuca sativa HOM05D001486 ORTHO05D004921 2.8e-75 285.8 198 73.2
THA.LOC104823681 Tarenaya hassleriana HOM05D001486 ORTHO05D004921 4.7e-75 285.0 214 66.8
AL1G32080 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 6.2e-75 284.6 225 66.2
Lj1g0014898 Lotus japonicus HOM05D001486 ORTHO05D004921 2.6e-73 279.3 208 68.8
AUR62030013 Chenopodium quinoa HOM05D001486 ORTHO05D004921 6.6e-69 264.6 179 76.5
AUR62002589 Chenopodium quinoa HOM05D001486 ORTHO05D004921 8.7e-69 264.2 179 76.0
Zm00001eb255180 Zea mays HOM05D001486 ORTHO05D004921 2.4e-66 256.1 190 68.4
Pp3c8_3720 Physcomitrium patens HOM05D001486 ORTHO05D004921 3.4e-65 252.3 209 60.3
Mapoly0035s0137 Marchantia polymorpha HOM05D001486 ORTHO05D004921 4.5e-65 251.9 208 58.7
Aa31LG1G260 Aethionema arabicum HOM05D001486 ORTHO05D004921 5.8e-65 251.5 179 74.3
Haze_10881 Corylus avellana HOM05D001486 ORTHO05D004921 1.1e-60 237.3 182 73.1
Nitab4.5_0010421g0010 Nicotiana tabacum HOM05D001486 ORTHO05D004921 1.1e-58 230.7 149 81.2
Peaxi162Scf00376g00816 Petunia axillaris HOM05D001486 ORTHO05D004921 1.1e-58 230.7 183 68.3
Nitab4.5_0004576g0040 Nicotiana tabacum HOM05D001486 ORTHO05D004921 3.1e-58 229.2 174 70.7
vmacro09906 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 2.2e-56 223.0 132 85.6
HanXRQChr12g0363231 Helianthus annuus HOM05D001486 ORTHO05D004921 6.4e-56 221.5 445 36.0
CDE06G1153 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 1.2e-54 217.2 179 67.0
vmacro04889 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 2.8e-51 206.1 117 86.3
CSS0012816 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 8.2e-43 177.9 188 56.4
RcHm_v2.0_Chr2g0167021 Rosa chinensis HOM05D001486 ORTHO05D004921 2.6e-41 172.9 223 52.0
Zm00001eb201400 Zea mays HOM05D001486 ORTHO05D004921 9.7e-36 154.5 131 63.4
Rhsim12G0118300 Rhododendron simsii HOM05D001486 ORTHO05D004921 3.9e-29 132.5 101 71.3
Peaxi162Scf01391g00116 Petunia axillaris HOM05D001486 ORTHO05D004921 5.9e-25 118.6 104 62.5
CDE07G1854 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 2.8e-11 73.2 41 82.9
CSS0014875 Camellia sinensis var. sinensis HOM05D014252 ORTHO05D004921 7.7e-09 65.1 40 80.0
MCO15G435 Micromonas commoda HOM05D001486 ORTHO05D004921 1.1e-07 61.2 246 30.9


User provided reference genes

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