Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1018500 Malus domestica HOM05D001486 ORTHO05D004921 0.0e+00 1394.0 696 100.0
MD13G1020400 Malus domestica HOM05D001486 ORTHO05D004921 0.0e+00 1266.1 745 87.0
Prupe.1G333300 Prunus persica HOM05D001486 ORTHO05D004921 0.0e+00 1225.7 746 84.3
RcHm_v2.0_Chr4g0443061 Rosa chinensis HOM05D001486 ORTHO05D004921 0.0e+00 1192.2 746 80.6
FvH4_4g33560 Fragaria vesca HOM05D001486 ORTHO05D004921 0.0e+00 1167.5 746 78.6
FAN07G1595 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 1167.5 746 78.8
FAN22G2372 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 1165.2 746 78.4
FAN12G0503 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 1159.8 746 78.2
FAN17G1739 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 1157.1 746 77.7
QL03p035815 Quercus lobata HOM05D001486 ORTHO05D004921 0.0e+00 1154.8 746 78.4
Glyma.08G045900 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 1140.6 745 76.8
Glyma.05G238800 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 1135.9 745 76.4
Haze_10881 Corylus avellana HOM05D001486 ORTHO05D004921 0.0e+00 1128.6 811 72.3
TPR.G19252 Trifolium pratense HOM05D001486 ORTHO05D004921 0.0e+00 1128.2 745 76.2
Manes.17G083900 Manihot esculenta HOM05D001486 ORTHO05D004921 0.0e+00 1125.2 749 75.3
Ca_17277_v3 Cicer arietinum L. HOM05D001486 ORTHO05D004921 0.0e+00 1124.4 745 76.0
Medtr8g105290 Medicago truncatula HOM05D001486 ORTHO05D004921 0.0e+00 1124.0 745 75.7
Lj4g0010019 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 1122.5 744 75.9
VMungo0251G0466 Vigna mungo HOM05D001486 ORTHO05D004921 0.0e+00 1122.5 745 75.6
Phvul.002G321200 Phaseolus vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 1121.3 745 75.4
Atru.chr11.925 Acer truncatum HOM05D001486 ORTHO05D004921 0.0e+00 1117.1 752 75.0
arahy.Tifrunner.gnm1.ann1.WZE3XK Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 1115.9 746 75.5
arahy.Tifrunner.gnm1.ann1.FK3VI9 Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 1113.6 746 75.2
CANSAT01G0610 Cannabis sativa HOM05D001486 ORTHO05D004921 0.0e+00 1110.5 746 76.4
Thecc.02G292500 Theobroma cacao HOM05D001486 ORTHO05D004921 0.0e+00 1106.3 752 74.6
TWI74G0959 Tripterygium wilfordii HOM05D001486 ORTHO05D004921 0.0e+00 1105.1 754 74.9
Psat7g007960 Pisum sativum HOM05D001486 ORTHO05D004921 0.0e+00 1097.0 745 74.2
Gorai.005G157100 Gossypium raimondii HOM05D001486 ORTHO05D004921 0.0e+00 1096.3 752 73.5
Lj3A864G85 Lonicera japonica HOM05D001486 ORTHO05D004921 0.0e+00 1096.3 752 74.3
Dinv07730 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 1095.9 752 73.7
Gohir.D02G139700 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 1094.0 752 73.3
Lalb_Chr09g0330891 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 1093.6 745 73.4
TAR629G0611 Trochodendron aralioides HOM05D001486 ORTHO05D004921 0.0e+00 1087.4 752 73.8
Duzib268G0355 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 1083.6 752 73.5
Cpa.g.sc2.194 Carica papaya HOM05D001486 ORTHO05D004921 0.0e+00 1081.6 752 73.4
Lalb_Chr05g0222211 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 1081.6 737 73.5
COL.COLO4_16588 Corchorus olitorius HOM05D001486 ORTHO05D004921 0.0e+00 1079.7 753 73.2
CSS0037038 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 0.0e+00 1078.2 752 73.0
Potri.008G134800 Populus trichocarpa HOM05D001486 ORTHO05D004921 0.0e+00 1077.0 752 72.3
Ciclev10014036m.g Citrus clementina HOM05D001486 ORTHO05D004921 0.0e+00 1076.6 752 72.7
Actinidia36627 Actinidia chinensis HOM05D001486 ORTHO05D004921 9.5e-312 1072.8 752 72.9
Actinidia12394 Actinidia chinensis HOM05D001486 ORTHO05D004921 3.3e-311 1071.2 752 73.0
PGR142G2431 Punica granatum HOM05D001486 ORTHO05D004921 3.3e-311 1071.2 753 73.0
MSTRG.2128 Avicennia marina HOM05D001486 ORTHO05D004921 1.4e-309 1065.8 750 70.9
Duzib251G0538 Durio zibethinus HOM05D001486 ORTHO05D004921 6.8e-309 1063.5 752 71.9
SalBow2G2685 Salvia bowleyana HOM05D001486 ORTHO05D004921 9.8e-308 1059.7 767 70.4
Hma1.2p1_0705F.1_g206910 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 1.8e-306 1055.4 752 72.5
Sabra08G0102800 Salix brachista HOM05D001486 ORTHO05D004921 1.8e-306 1055.4 766 70.2
Eucgr.G02106 Eucalyptus grandis HOM05D001486 ORTHO05D004921 1.0e-304 1049.7 752 70.7
THA.LOC104823681 Tarenaya hassleriana HOM05D001486 ORTHO05D004921 3.0e-304 1048.1 745 72.3
Sed0010499 Sechium edule HOM05D001486 ORTHO05D004921 5.0e-304 1047.3 746 70.4
Aqoxy3G03310 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 6.6e-304 1047.0 750 69.7
Migut.E00481 Erythranthe guttata HOM05D001486 ORTHO05D004921 1.9e-303 1045.4 744 70.8
Aqoxy7G03241 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 8.0e-302 1040.0 750 69.1
SGA_v2.0_scaffold23G10214 Striga asiatica HOM05D001486 ORTHO05D004921 2.3e-301 1038.5 744 71.0
EL10Ac3g06288 Beta vulgaris HOM05D001486 ORTHO05D004921 5.2e-301 1037.3 747 71.5
ClCG07G005610 Citrullus lanatus HOM05D001486 ORTHO05D004921 8.3e-299 1030.0 746 69.6
MELO3C026441.2 Cucumis melo HOM05D001486 ORTHO05D004921 1.4e-298 1029.2 746 69.7
CsaV3_5G015740 Cucumis sativus L. HOM05D001486 ORTHO05D004921 4.1e-298 1027.7 746 69.6
DCAR_007329 Daucus carota HOM05D001486 ORTHO05D004921 6.0e-297 1023.8 750 68.1
AUR62002589 Chenopodium quinoa HOM05D001486 ORTHO05D004921 7.8e-297 1023.5 774 67.4
ECA233G0786 Erigeron canadensis HOM05D001486 ORTHO05D004921 6.6e-296 1020.4 736 69.4
Sopen07g004030 Solanum pennellii HOM05D001486 ORTHO05D004921 6.6e-296 1020.4 748 69.0
vmacro10693 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 2.1e-294 1015.4 807 65.2
Ah.13g072990 Amaranthus hybridus HOM05D001486 ORTHO05D004921 2.8e-294 1015.0 749 69.6
Solyc07g008160.3 Solanum lycopersicum HOM05D001486 ORTHO05D004921 1.1e-293 1013.1 748 68.6
AL1G26870 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 3.1e-293 1011.5 750 69.5
CAN.G149.16 Capsicum annuum HOM05D001486 ORTHO05D004921 3.1e-293 1011.5 748 68.0
HanXRQChr08g0212501 Helianthus annuus HOM05D001486 ORTHO05D004921 5.2e-293 1010.7 745 69.0
Hund13366 Selenicereus undatus HOM05D001486 ORTHO05D004921 1.2e-292 1009.6 808 65.6
Cc04_g10510 Coffea canephora HOM05D001486 ORTHO05D004921 1.5e-292 1009.2 751 68.4
AT1G14850 Arabidopsis thaliana HOM05D001486 ORTHO05D004921 2.6e-292 1008.4 750 69.2
Oeu064208.1 Olea europaea HOM05D001486 ORTHO05D004921 2.6e-292 1008.4 751 68.2
Thhalv10006562m.g Eutrema salsugineum HOM05D001486 ORTHO05D004921 4.4e-292 1007.7 746 69.6
Rhsim09G0089500 Rhododendron simsii HOM05D001486 ORTHO05D004921 4.9e-291 1004.2 822 63.5
BolC8t52091H Brassica oleracea HOM05D001486 ORTHO05D004921 2.4e-290 1001.9 746 69.0
BcaC07g41534 Brassica carinata HOM05D001486 ORTHO05D004921 4.1e-290 1001.1 746 69.0
BcaB02g06554 Brassica carinata HOM05D001486 ORTHO05D004921 2.7e-289 998.4 746 68.9
C08p45360 Brassica napus HOM05D001486 ORTHO05D004921 4.6e-289 997.7 746 68.9
BraA09t41545Z Brassica rapa HOM05D001486 ORTHO05D004921 1.3e-288 996.1 746 68.9
Carub.0001s1464 Capsella rubella HOM05D001486 ORTHO05D004921 1.3e-288 996.1 748 68.6
Lsat_1_v5_gn_8_46521 Lactuca sativa HOM05D001486 ORTHO05D004921 1.3e-288 996.1 746 67.7
A09p61750 Brassica napus HOM05D001486 ORTHO05D004921 3.0e-288 995.0 746 68.9
Nn4g24372 Nelumbo nucifera HOM05D001486 ORTHO05D004921 5.1e-288 994.2 697 72.6
C05p12830 Brassica napus HOM05D001486 ORTHO05D004921 8.6e-288 993.4 746 68.8
CARHR015390 Cardamine hirsuta HOM05D001486 ORTHO05D004921 3.3e-287 991.5 750 68.4
BcaC05g25406 Brassica carinata HOM05D001486 ORTHO05D004921 4.3e-287 991.1 746 68.6
BolC5t30028H Brassica oleracea HOM05D001486 ORTHO05D004921 4.3e-287 991.1 746 68.6
Aa31LG1G260 Aethionema arabicum HOM05D001486 ORTHO05D004921 1.6e-286 989.2 751 68.3
Sp1g13290 Schrenkiella parvula HOM05D001486 ORTHO05D004921 4.7e-286 987.6 746 68.5
BraA06t24267Z Brassica rapa HOM05D001486 ORTHO05D004921 3.4e-284 981.5 745 67.8
AUR62030013 Chenopodium quinoa HOM05D001486 ORTHO05D004921 1.9e-282 975.7 868 60.4
BcaB08g34420 Brassica carinata HOM05D001486 ORTHO05D004921 7.1e-282 973.8 743 68.1
PSO782G0822 Papaver somniferum HOM05D001486 ORTHO05D004921 1.5e-279 966.1 748 64.4
Sc11g0004180 Simmondsia chinensis HOM05D001486 ORTHO05D004921 5.6e-279 964.1 749 66.4
PSO063G3102 Papaver somniferum HOM05D001486 ORTHO05D004921 2.0e-276 955.7 748 64.2
Peaxi162Scf00376g00816 Petunia axillaris HOM05D001486 ORTHO05D004921 2.1e-270 935.6 696 68.7
ATR0753G157 Amborella trichopoda HOM05D001486 ORTHO05D004921 6.4e-267 924.1 755 63.2
Os06g0305200 Oryza sativa ssp. japonica HOM05D001486 ORTHO05D004921 1.3e-259 899.8 746 61.3
HPP92_002282 Vanilla planifolia HOM05D001486 ORTHO05D004921 1.7e-259 899.4 747 61.8
HanXRQChr12g0363231 Helianthus annuus HOM05D001486 ORTHO05D004921 1.1e-247 860.1 671 65.3
CiPaw.06G051900 Carya illinoinensis HOM05D001486 ORTHO05D004921 1.7e-243 846.3 558 77.6
Zm00001eb009110 Zea mays HOM05D001486 ORTHO05D004921 5.7e-239 831.2 698 60.3
Zm00001eb399840 Zea mays HOM05D001486 ORTHO05D004921 1.5e-236 823.2 717 59.7
Peaxi162Scf01391g00116 Petunia axillaris HOM05D001486 ORTHO05D004921 2.2e-230 802.7 768 56.5
Dinv10475 Davidia involucrata HOM05D001486 ORTHO05D004921 2.8e-230 802.4 563 72.8
Gohir.A03G115400 Gossypium hirsutum HOM05D001486 ORTHO05D004921 5.9e-228 794.7 563 72.5
Hma1.2p1_0277F.1_g111740 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 1.2e-225 786.9 571 72.7
A06p10890 Brassica napus HOM05D001486 ORTHO05D004921 5.0e-219 765.0 593 66.8
AagrBONN_evm.TU.Sc2ySwM_362.1455 Anthoceros agrestis HOM05D001486 ORTHO05D004921 1.6e-217 760.0 740 53.6
Pp3c8_3720 Physcomitrium patens HOM05D001486 ORTHO05D004921 6.7e-216 754.6 748 52.7
Mapoly0035s0137 Marchantia polymorpha HOM05D001486 ORTHO05D004921 6.5e-211 738.0 752 53.3
CAN.G601.2 Capsicum annuum HOM05D001486 ORTHO05D004921 3.2e-210 735.7 559 67.8
CDE06G1861 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 3.8e-203 712.2 578 62.6
SEGI_07920 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 1.5e-202 710.3 647 57.5
Peaxi162Scf01152g00010 Petunia axillaris HOM05D001486 ORTHO05D004921 4.4e-199 698.7 742 53.4
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 6.1e-193 678.3 596 60.6
unitig_27.g25160 Utricularia gibba HOM05D001486 ORTHO05D004921 1.7e-174 617.1 608 54.4
GSVIVG01011661001 Vitis vinifera HOM05D001486 ORTHO05D004921 1.3e-166 590.9 363 78.5
Nitab4.5_0004576g0040 Nicotiana tabacum HOM05D001486 ORTHO05D004921 1.9e-165 587.0 593 53.6
Nitab4.5_0010421g0010 Nicotiana tabacum HOM05D001486 ORTHO05D004921 5.1e-147 525.8 593 49.9
ECA247G0951 Erigeron canadensis HOM05D001486 ORTHO05D004921 4.9e-142 509.2 660 45.5
Peaxi162Scf01152g00113 Petunia axillaris HOM05D001486 ORTHO05D004921 1.1e-133 481.5 489 54.6
Carub.0127s0003 Capsella rubella HOM05D001486 ORTHO05D004921 9.7e-130 468.4 715 41.3
AL1G32070 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 2.6e-127 460.3 468 54.7
Lj1g0014898 Lotus japonicus HOM05D001486 ORTHO05D004921 9.7e-122 441.8 349 67.9
CDE07G0203 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 5.9e-87 326.2 409 46.7
CDE07G1854 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 8.9e-67 259.2 190 68.9
FvH4_1g18130 Fragaria vesca HOM05D001486 ORTHO05D004921 2.3e-59 234.6 136 77.2
PRCOL_00002396 Prasinoderma coloniale HOM05D001486 ORTHO05D004921 3.4e-58 230.7 665 31.0
CAN.G601.1 Capsicum annuum HOM05D001486 ORTHO05D004921 2.2e-57 228.0 136 75.0
MCO15G435 Micromonas commoda HOM05D001486 ORTHO05D004921 4.9e-49 200.3 831 25.3
Cre09.g394350 Chlamydomonas reinhardtii HOM05D001486 ORTHO05D004921 6.4e-49 199.9 641 27.3
RcHm_v2.0_Chr2g0167011 Rosa chinensis HOM05D001486 ORTHO05D004921 4.2e-40 170.6 183 54.1
SGA_v2.0_scaffold23G10209 Striga asiatica HOM05D001486 ORTHO05D004921 1.2e-34 152.5 83 81.9
Zm00001eb235300 Zea mays HOM05D001486 ORTHO05D004921 7.6e-34 149.8 129 58.9
CARHR227050 Cardamine hirsuta HOM05D001486 ORTHO05D004921 2.8e-28 131.3 138 50.0
BcaC09g49263 Brassica carinata HOM05D001486 ORTHO05D012131 4.8e-28 130.6 136 52.9
BcaC01g04114 Brassica carinata HOM05D001486 ORTHO05D012131 5.3e-27 127.1 102 63.7
ClCG01G015310 Citrullus lanatus HOM05D001486 ORTHO05D004921 5.7e-21 107.1 56 85.7
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 9.6e-21 106.3 67 74.6
AL2G18360 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 3.1e-19 101.3 173 40.5
SEGI_12550 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 1.5e-18 99.0 65 69.2
AL3G34910 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 5.8e-18 97.1 133 43.6
Cfa024881 Carpinus fangiana HOM05D005623 ORTHO05D007130 9.3e-16 89.7 716 21.5
Hma1.2p1_0277F.1_g111730 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 3.9e-14 84.3 53 77.4
Hma1.2p1_0705F.1_g206905 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 3.9e-14 84.3 53 77.4
Zm00001eb334690 Zea mays HOM05D001486 ORTHO05D037216 8.5e-09 66.6 54 63.0
SMO306G0002 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 1.4e-08 65.9 152 28.9
SMO270G0006 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 3.2e-08 64.7 152 28.9
FvH4_4g10520 Fragaria vesca HOM05D002057 ORTHO05D004921 1.8e-06 58.9 26 96.2
SEGI_21189 Sequoiadendron giganteum HOM05D001486 ORTHO05D037216 3.0e-06 58.2 53 56.6


User provided reference genes

Program Settings