Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1034100 Malus domestica HOM05D005290 ORTHO05D006040 4.1e-81 304.7 155 100.0
MD12G1033300 Malus domestica HOM05D005290 ORTHO05D006040 7.1e-41 171.0 235 47.2
Prupe.1G555900 Prunus persica HOM05D005290 ORTHO05D006040 5.6e-38 161.4 235 46.8
RcHm_v2.0_Chr3g0494621 Rosa chinensis HOM05D005290 ORTHO05D006040 9.0e-36 154.1 237 44.3
FvH4_5g31560 Fragaria vesca HOM05D005290 ORTHO05D006040 2.6e-35 152.5 236 43.6
FAN04G2711 Fragaria x ananassa HOM05D005290 ORTHO05D006040 7.6e-35 151.0 236 42.8
RcHm_v2.0_Chr7g0226931 Rosa chinensis HOM05D005290 ORTHO05D006040 1.1e-33 147.1 236 42.8
TWI59G0173 Tripterygium wilfordii HOM05D005290 ORTHO05D006040 5.6e-30 134.8 196 44.9
Nn1g08422 Nelumbo nucifera HOM05D005290 ORTHO05D006040 2.1e-29 132.9 235 37.4
CSS0033470 Camellia sinensis var. sinensis HOM05D005290 ORTHO05D006040 4.8e-29 131.7 237 38.8
Rhsim12G0006000 Rhododendron simsii HOM05D005290 ORTHO05D006040 4.8e-29 131.7 236 38.6
vmacro00977 Vaccinium macrocarpon HOM05D005290 ORTHO05D006040 6.2e-29 131.3 237 38.8
CSS0003964 Camellia sinensis var. sinensis HOM05D005290 ORTHO05D006040 8.1e-29 131.0 233 38.6
TAR381G0263 Trochodendron aralioides HOM05D005290 ORTHO05D006040 5.3e-28 128.3 237 37.6
FAN18G4563 Fragaria x ananassa HOM05D005290 ORTHO05D006040 6.9e-28 127.9 221 40.7
PGR042G0738 Punica granatum HOM05D005290 ORTHO05D006040 6.9e-28 127.9 195 42.1
Gohir.A13G118900 Gossypium hirsutum HOM05D005290 ORTHO05D006040 1.5e-27 126.7 236 38.6
Hund27128 Selenicereus undatus HOM05D005290 ORTHO05D006040 1.5e-27 126.7 234 37.6
Hund27133 Selenicereus undatus HOM05D005290 ORTHO05D006040 1.5e-27 126.7 234 37.6
Duzib177G0512 Durio zibethinus HOM05D005290 ORTHO05D006040 2.6e-27 125.9 237 37.6
Gohir.D13G122700 Gossypium hirsutum HOM05D005290 ORTHO05D006040 2.6e-27 125.9 237 38.4
Gorai.013G137700 Gossypium raimondii HOM05D005290 ORTHO05D006040 4.5e-27 125.2 237 38.4
Peaxi162Scf00076g10023 Petunia axillaris HOM05D005290 ORTHO05D006040 5.8e-27 124.8 224 40.6
CiPaw.07G235300 Carya illinoinensis HOM05D005290 ORTHO05D006040 7.6e-27 124.4 237 38.0
Oeu059199.1 Olea europaea HOM05D005290 ORTHO05D006040 7.6e-27 124.4 228 37.3
Dinv41762 Davidia involucrata HOM05D005290 ORTHO05D006040 1.0e-26 124.0 236 38.1
MBI03_g18676_MAGBIO Magnolia biondii HOM05D005290 ORTHO05D006040 1.3e-26 123.6 236 36.9
Thecc.08G192800 Theobroma cacao HOM05D005290 ORTHO05D006040 2.2e-26 122.9 237 37.6
EL10Ac1g00141 Beta vulgaris HOM05D005290 ORTHO05D006040 2.9e-26 122.5 227 37.4
Ciclev10019018m.g Citrus clementina HOM05D005290 ORTHO05D006040 2.9e-26 122.5 237 38.0
CsaV3_6G002720 Cucumis sativus L. HOM05D005290 ORTHO05D006040 3.8e-26 122.1 233 36.1
Eucgr.F02988 Eucalyptus grandis HOM05D005290 ORTHO05D006040 4.9e-26 121.7 237 36.7
HanXRQChr09g0266431 Helianthus annuus HOM05D005290 ORTHO05D006040 4.9e-26 121.7 215 38.1
Potri.019G078700 Populus trichocarpa HOM05D005290 ORTHO05D006040 4.9e-26 121.7 234 37.2
Sabra19G0089500 Salix brachista HOM05D005290 ORTHO05D006040 4.9e-26 121.7 233 36.9
Atru.chr13.2376 Acer truncatum HOM05D005290 ORTHO05D006040 6.5e-26 121.3 237 36.7
Aqoxy6G00108 Aquilegia oxysepala HOM05D005290 ORTHO05D006040 6.5e-26 121.3 236 36.9
Sc01g0002020 Simmondsia chinensis HOM05D005290 ORTHO05D006040 6.5e-26 121.3 232 37.5
Lj3g0002821 Lotus japonicus HOM05D005290 ORTHO05D006040 1.4e-25 120.2 234 37.2
Nitab4.5_0008566g0030 Nicotiana tabacum HOM05D005290 ORTHO05D006040 1.4e-25 120.2 236 37.7
VMungo1080G0256 Vigna mungo HOM05D005290 ORTHO05D006040 1.4e-25 120.2 235 36.6
TPR.G25526 Trifolium pratense HOM05D005290 ORTHO05D006040 1.9e-25 119.8 235 36.2
Migut.C01329 Erythranthe guttata HOM05D005290 ORTHO05D006040 2.5e-25 119.4 233 36.5
Hma1.2p1_0004F.1_g003900 Hydrangea macrophylla HOM05D005290 ORTHO05D006040 2.5e-25 119.4 234 37.2
Phvul.005G002000 Phaseolus vulgaris HOM05D005290 ORTHO05D006040 2.5e-25 119.4 234 36.8
CANSAT80G2649 Cannabis sativa HOM05D005290 ORTHO05D006040 3.2e-25 119.0 273 33.7
Medtr3g005810 Medicago truncatula HOM05D005290 ORTHO05D006040 3.2e-25 119.0 235 35.7
AL6G42870 Arabidopsis lyrata HOM05D005290 ORTHO05D006040 4.2e-25 118.6 231 35.9
Solyc04g045660.4 Solanum lycopersicum HOM05D005290 ORTHO05D006040 4.2e-25 118.6 235 37.4
CAN.G982.5 Capsicum annuum HOM05D005290 ORTHO05D006040 5.5e-25 118.2 236 37.7
MELO3C025009.2 Cucumis melo HOM05D005290 ORTHO05D006040 5.5e-25 118.2 233 36.1
Sopen04g017660 Solanum pennellii HOM05D005290 ORTHO05D006040 5.5e-25 118.2 234 37.2
Lsat_1_v5_gn_1_31200 Lactuca sativa HOM05D005290 ORTHO05D006040 9.3e-25 117.5 228 36.8
MSTRG.25478 Avicennia marina HOM05D005290 ORTHO05D006040 1.2e-24 117.1 232 36.2
Manes.02G198901 Manihot esculenta HOM05D005290 ORTHO05D006040 1.2e-24 117.1 235 37.4
Glyma.04G254900 Glycine max HOM05D005290 ORTHO05D006040 1.6e-24 116.7 237 35.0
Psat1g008120 Pisum sativum HOM05D005290 ORTHO05D006040 1.6e-24 116.7 235 35.3
AUR62004596 Chenopodium quinoa HOM05D005290 ORTHO05D006040 3.5e-24 115.5 236 34.7
BcaC01g04730 Brassica carinata HOM05D005290 ORTHO05D006040 4.6e-24 115.2 221 36.2
Lj7C285G2 Lonicera japonica HOM05D005290 ORTHO05D006040 4.6e-24 115.2 236 34.7
Cc10_g09470 Coffea canephora HOM05D005290 ORTHO05D006040 7.9e-24 114.4 235 36.2
Nitab4.5_0006434g0010 Nicotiana tabacum HOM05D005290 ORTHO05D006040 7.9e-24 114.4 235 37.9
PSO170G3966 Papaver somniferum HOM05D005290 ORTHO05D006040 1.0e-23 114.0 230 36.1
SGA_v2.0_scaffold118G32566 Striga asiatica HOM05D005290 ORTHO05D006040 1.0e-23 114.0 237 36.3
Ah.05g178620 Amaranthus hybridus HOM05D005290 ORTHO05D006040 1.3e-23 113.6 235 36.6
Haze_21326 Corylus avellana HOM05D005290 ORTHO05D006040 1.3e-23 113.6 83 69.9
Thhalv10028465m.g Eutrema salsugineum HOM05D005290 ORTHO05D006040 1.8e-23 113.2 231 35.1
Os01g0958900 Oryza sativa ssp. japonica HOM05D005290 ORTHO05D006040 1.8e-23 113.2 229 35.8
Sed0025467 Sechium edule HOM05D005290 ORTHO05D006040 3.0e-23 112.5 234 33.8
AT4G09140 Arabidopsis thaliana HOM05D005290 ORTHO05D006040 3.9e-23 112.1 231 34.6
BcaB01g02803 Brassica carinata HOM05D005290 ORTHO05D006040 3.9e-23 112.1 232 35.3
Sp6g08400 Schrenkiella parvula HOM05D005290 ORTHO05D006040 5.1e-23 111.7 231 35.9
Zm00001eb362590 Zea mays HOM05D005290 ORTHO05D006040 5.1e-23 111.7 227 35.2
C03p34390 Brassica napus HOM05D005290 ORTHO05D006040 8.7e-23 110.9 232 34.5
BolC3t15749H Brassica oleracea HOM05D005290 ORTHO05D006040 8.7e-23 110.9 232 34.5
A03p28460 Brassica napus HOM05D005290 ORTHO05D006040 1.1e-22 110.5 233 34.3
BraA03t12051Z Brassica rapa HOM05D005290 ORTHO05D006040 1.1e-22 110.5 233 34.3
SalBow7G4073 Salvia bowleyana HOM05D005290 ORTHO05D006040 1.1e-22 110.5 231 35.5
Aa31LG9G14750 Aethionema arabicum HOM05D005290 ORTHO05D006040 1.5e-22 110.2 230 34.3
unitig_26.g9865 Utricularia gibba HOM05D005290 ORTHO05D006040 1.5e-22 110.2 232 34.9
PSO782G1799 Papaver somniferum HOM05D005290 ORTHO05D006040 2.5e-22 109.4 230 35.2
ClCG08G002450 Citrullus lanatus HOM05D005290 ORTHO05D006040 4.3e-22 108.6 70 71.4
Sed0027029 Sechium edule HOM05D005290 ORTHO05D006040 4.3e-22 108.6 234 32.9
Carub.0006s2769 Capsella rubella HOM05D005290 ORTHO05D006040 5.7e-22 108.2 232 34.9
CARHR260140 Cardamine hirsuta HOM05D005290 ORTHO05D006040 7.4e-22 107.8 228 35.1
Lalb_Chr07g0189291 Lupinus albus HOM05D005290 ORTHO05D006040 2.1e-21 106.3 235 34.0
Sed0005919 Sechium edule HOM05D005290 ORTHO05D006040 4.8e-21 105.1 230 33.9
ECA232G1421 Erigeron canadensis HOM05D005290 ORTHO05D006040 1.4e-20 103.6 220 33.6
ATR1136G152 Amborella trichopoda HOM05D005290 ORTHO05D006040 6.9e-20 101.3 237 31.6
HPP92_004621 Vanilla planifolia HOM05D005290 ORTHO05D006040 1.2e-19 100.5 64 70.3
SHI12388 Sapria himalayana HOM05D005290 ORTHO05D006040 2.0e-19 99.8 233 31.3
PGSC0003DMG401015043 Solanum tuberosum HOM05D005290 ORTHO05D006040 4.5e-19 98.6 64 75.0
DCAR_017434 Daucus carota HOM05D005290 ORTHO05D006040 5.8e-19 98.2 88 54.5
Cpa.g.sc50.56 Carica papaya HOM05D005290 ORTHO05D006040 1.3e-18 97.1 225 33.3
COL.COLO4_24646 Corchorus olitorius HOM05D005290 ORTHO05D006040 6.5e-18 94.7 223 32.7
arahy.Tifrunner.gnm1.ann1.0B02IH Arachis hypogaea HOM05D005290 ORTHO05D006040 1.6e-16 90.1 237 32.5
arahy.Tifrunner.gnm1.ann1.QF83TB Arachis hypogaea HOM05D005290 ORTHO05D006040 7.9e-16 87.8 224 33.0
Ca_13983_v3 Cicer arietinum L. HOM05D005290 ORTHO05D006040 5.1e-15 85.1 215 33.0
Lalb_Chr18g0049141 Lupinus albus HOM05D005290 ORTHO05D006040 1.3e-13 80.5 232 30.2
Pp3c10_9000 Physcomitrium patens HOM05D005290 ORTHO05D006040 3.7e-13 79.0 230 29.1
Mapoly0086s0067 Marchantia polymorpha HOM05D005290 ORTHO05D006040 3.1e-12 75.9 128 34.4
AUR62023548 Chenopodium quinoa HOM05D005290 ORTHO05D006040 4.1e-12 75.5 114 38.6
AagrBONN_evm.TU.Sc2ySwM_344.4012 Anthoceros agrestis HOM05D005290 ORTHO05D006040 5.3e-12 75.1 231 29.4
CSS0016165 Camellia sinensis var. sinensis HOM05D005290 ORTHO05D006040 4.5e-11 72.0 198 31.3
Cfa012974 Carpinus fangiana HOM05D005290 ORTHO05D006040 4.5e-11 72.0 55 70.9
ClCG08G002460 Citrullus lanatus HOM05D005290 ORTHO05D006040 1.1e-09 67.4 56 66.1
SEGI_07557 Sequoiadendron giganteum HOM05D005290 ORTHO05D006040 5.5e-09 65.1 216 25.5
CBR_g11107 Chara braunii HOM05D005290 ORTHO05D006040 3.6e-08 62.4 48 58.3
Glyma.19G059900 Glycine max HOM05D005290 ORTHO05D006040 6.1e-08 61.6 55 58.2
HPP92_004622 Vanilla planifolia HOM05D005290 ORTHO05D006040 7.9e-08 61.2 55 61.8
SMO340G0005 Selaginella moellendorffii HOM05D005290 ORTHO05D006040 1.1e-06 57.4 197 24.9


User provided reference genes

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