Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD12G1202100 Malus domestica HOM05D005824 ORTHO05D007029 0.0e+00 1275.8 707 100.0
MD04G1189300 Malus domestica HOM05D005824 ORTHO05D007029 0.0e+00 1111.7 707 89.5
Prupe.6G306900 Prunus persica HOM05D005824 ORTHO05D007029 5.9e-252 874.4 722 73.3
RcHm_v2.0_Chr3g0458051 Rosa chinensis HOM05D005824 ORTHO05D007029 1.2e-188 664.1 741 55.1
QL07p026733 Quercus lobata HOM05D005824 ORTHO05D007029 4.8e-185 652.1 717 53.6
FvH4_6g08180 Fragaria vesca HOM05D005824 ORTHO05D007029 3.8e-182 642.5 766 50.7
FAN14G3202 Fragaria x ananassa HOM05D005824 ORTHO05D007029 6.5e-182 641.7 766 50.7
GSVIVG01031305001 Vitis vinifera HOM05D005824 ORTHO05D007029 9.7e-178 627.9 713 49.9
CSS0029355 Camellia sinensis var. sinensis HOM05D005824 ORTHO05D007029 3.8e-174 615.9 714 50.6
Cfa020078 Carpinus fangiana HOM05D005824 ORTHO05D007029 1.5e-170 604.0 719 51.5
CiPaw.10G020000 Carya illinoinensis HOM05D005824 ORTHO05D007029 9.7e-170 601.3 718 49.2
FAN09G3961 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.7e-169 600.5 766 48.2
Lalb_Chr02g0154321 Lupinus albus HOM05D005824 ORTHO05D007029 3.1e-168 596.3 743 48.2
Rhsim11G0099700 Rhododendron simsii HOM05D005824 ORTHO05D007029 1.3e-166 590.9 704 48.4
CANSAT54G1845 Cannabis sativa HOM05D005824 ORTHO05D007029 8.5e-166 588.2 736 48.5
Thecc.09G352900 Theobroma cacao HOM05D005824 ORTHO05D007029 5.5e-165 585.5 752 48.3
Dinv24497 Davidia involucrata HOM05D005824 ORTHO05D007029 1.6e-164 583.9 710 49.2
FAN05G5613 Fragaria x ananassa HOM05D005824 ORTHO05D007029 2.7e-164 583.2 704 53.8
Lj3g0001001 Lotus japonicus HOM05D005824 ORTHO05D007029 7.4e-162 575.1 759 46.4
Ca_11665_v3 Cicer arietinum L. HOM05D005824 ORTHO05D007029 3.7e-161 572.8 724 48.5
TPR.G21237 Trifolium pratense HOM05D005824 ORTHO05D007029 3.7e-161 572.8 768 47.3
Atru.chr12.1601 Acer truncatum HOM05D005824 ORTHO05D007029 6.3e-161 572.0 746 47.3
TPR.G12910 Trifolium pratense HOM05D005824 ORTHO05D007029 3.1e-160 569.7 771 47.1
Lj5g0026124 Lotus japonicus HOM05D005824 ORTHO05D007029 4.5e-159 565.8 764 46.1
Gohir.A03G155800 Gossypium hirsutum HOM05D005824 ORTHO05D007029 5.9e-159 565.5 758 46.8
arahy.Tifrunner.gnm1.ann1.S86EGP Arachis hypogaea HOM05D005824 ORTHO05D007029 7.7e-159 565.1 758 46.4
Psat6g118640 Pisum sativum HOM05D005824 ORTHO05D007029 1.3e-158 564.3 772 46.8
arahy.Tifrunner.gnm1.ann1.E5V6X9 Arachis hypogaea HOM05D005824 ORTHO05D007029 2.2e-158 563.5 764 45.9
Manes.06G027100 Manihot esculenta HOM05D005824 ORTHO05D007029 2.2e-158 563.5 715 48.3
Potri.015G010900 Populus trichocarpa HOM05D005824 ORTHO05D007029 2.2e-158 563.5 767 44.5
Sopen01g044470 Solanum pennellii HOM05D005824 ORTHO05D007029 5.0e-158 562.4 717 48.1
VMungo0720G2244 Vigna mungo HOM05D005824 ORTHO05D007029 5.0e-158 562.4 751 46.7
Sabra15G0009000 Salix brachista HOM05D005824 ORTHO05D007029 4.2e-157 559.3 783 43.6
Nitab4.5_0009690g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 5.5e-157 558.9 715 47.6
Cpa.g.sc48.209 Carica papaya HOM05D005824 ORTHO05D007029 1.6e-156 557.4 718 47.9
ClCG07G011770 Citrullus lanatus HOM05D005824 ORTHO05D007029 2.1e-156 557.0 725 47.4
Gorai.005G200700 Gossypium raimondii HOM05D005824 ORTHO05D007029 2.1e-156 557.0 773 46.2
TWI38G0226 Tripterygium wilfordii HOM05D005824 ORTHO05D007029 4.7e-156 555.8 713 46.8
Medtr1g055080 Medicago truncatula HOM05D005824 ORTHO05D007029 8.0e-156 555.1 765 46.4
Eucgr.B01798 Eucalyptus grandis HOM05D005824 ORTHO05D007029 5.2e-155 552.4 727 46.1
Glyma.02G192500 Glycine max HOM05D005824 ORTHO05D007029 1.2e-154 551.2 775 45.5
PGSC0003DMG400018251 Solanum tuberosum HOM05D005824 ORTHO05D007029 3.3e-154 549.7 718 48.1
Haze_20113 Corylus avellana HOM05D005824 ORTHO05D007029 2.2e-153 547.0 783 46.0
TAR362G0448 Trochodendron aralioides HOM05D005824 ORTHO05D007029 1.0e-150 538.1 715 46.3
CsaV3_4G002430 Cucumis sativus L. HOM05D005824 ORTHO05D007029 1.3e-150 537.7 724 45.9
Glyma.10G084300 Glycine max HOM05D005824 ORTHO05D007029 1.3e-150 537.7 774 44.6
MELO3C017799.2 Cucumis melo HOM05D005824 ORTHO05D007029 6.5e-150 535.4 725 46.3
Gohir.D02G178900 Gossypium hirsutum HOM05D005824 ORTHO05D007029 5.5e-149 532.3 773 44.6
Nn2g14227 Nelumbo nucifera HOM05D005824 ORTHO05D007029 7.2e-149 531.9 711 47.1
Oeu061927.1 Olea europaea HOM05D005824 ORTHO05D007029 9.4e-149 531.6 763 44.7
vmacro01596 Vaccinium macrocarpon HOM05D005824 ORTHO05D007029 1.2e-148 531.2 700 45.9
FAN02G4519 Fragaria x ananassa HOM05D005824 ORTHO05D007029 6.1e-148 528.9 712 49.4
MSTRG.15631 Avicennia marina HOM05D005824 ORTHO05D007029 5.7e-146 522.3 719 46.3
Sed0007659 Sechium edule HOM05D005824 ORTHO05D007029 7.5e-146 521.9 720 44.7
AUR62006798 Chenopodium quinoa HOM05D005824 ORTHO05D007029 2.8e-145 520.0 798 42.1
Lj5A322T66 Lonicera japonica HOM05D005824 ORTHO05D007029 3.7e-145 519.6 683 46.3
CAN.G1374.10 Capsicum annuum HOM05D005824 ORTHO05D007029 1.1e-144 518.1 716 45.5
PSO384G0570 Papaver somniferum HOM05D005824 ORTHO05D007029 1.4e-144 517.7 694 47.6
PSO339G3868 Papaver somniferum HOM05D005824 ORTHO05D007029 2.4e-144 516.9 696 47.6
Aqoxy2G02580 Aquilegia oxysepala HOM05D005824 ORTHO05D007029 3.5e-143 513.1 720 43.3
Phvul.007G265900 Phaseolus vulgaris HOM05D005824 ORTHO05D007029 1.7e-142 510.8 762 43.3
SalBow7G3942 Salvia bowleyana HOM05D005824 ORTHO05D007029 1.7e-142 510.8 707 44.6
AUR62000450 Chenopodium quinoa HOM05D005824 ORTHO05D007029 2.3e-142 510.4 806 41.2
COL.COLO4_11087 Corchorus olitorius HOM05D005824 ORTHO05D007029 1.5e-141 507.7 706 44.2
MBI19_g32704_MAGBIO Magnolia biondii HOM05D005824 ORTHO05D007029 2.8e-140 503.4 795 42.3
Migut.B00860 Erythranthe guttata HOM05D005824 ORTHO05D007029 8.9e-139 498.4 702 45.4
PSO017G5895 Papaver somniferum HOM05D005824 ORTHO05D007029 1.2e-138 498.0 693 45.3
Hund21844 Selenicereus undatus HOM05D005824 ORTHO05D007029 1.2e-138 498.0 847 41.0
Sc09g0002470 Simmondsia chinensis HOM05D005824 ORTHO05D007029 1.2e-138 498.0 767 42.8
ECA247G2466 Erigeron canadensis HOM05D005824 ORTHO05D007029 3.1e-136 490.0 702 43.9
PSO063G2449 Papaver somniferum HOM05D005824 ORTHO05D007029 4.1e-136 489.6 696 44.1
EL10Ac4g09532 Beta vulgaris HOM05D005824 ORTHO05D007029 2.7e-135 486.9 780 41.0
Nitab4.5_0000185g0360 Nicotiana tabacum HOM05D005824 ORTHO05D007029 4.5e-135 486.1 716 43.0
Cc02_g35570 Coffea canephora HOM05D005824 ORTHO05D007029 1.1e-133 481.5 776 40.2
Duzib150G0567 Durio zibethinus HOM05D005824 ORTHO05D007029 7.3e-133 478.8 711 44.6
THA.LOC104821746 Tarenaya hassleriana HOM05D005824 ORTHO05D007029 3.6e-132 476.5 787 40.4
SGA_v2.0_scaffold33G13450 Striga asiatica HOM05D005824 ORTHO05D007029 4.0e-131 473.0 748 41.6
Duzib168G0004 Durio zibethinus HOM05D005824 ORTHO05D007029 4.4e-130 469.5 703 42.0
Hma1.2p1_1243F.1_g269980 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 1.9e-128 464.2 627 46.6
DCAR_005271 Daucus carota HOM05D005824 ORTHO05D007029 2.8e-124 450.3 722 41.7
Aa31LG11G9880 Aethionema arabicum HOM05D005824 ORTHO05D007029 1.2e-119 434.9 768 38.0
Peaxi162Scf00357g00429 Petunia axillaris HOM05D005824 ORTHO05D007029 8.6e-118 428.7 665 41.8
Ah.10g027060 Amaranthus hybridus HOM05D005824 ORTHO05D007029 1.9e-117 427.6 812 37.7
Thhalv10003721m.g Eutrema salsugineum HOM05D005824 ORTHO05D007029 1.2e-116 424.9 750 40.0
Sp2g21220 Schrenkiella parvula HOM05D005824 ORTHO05D007029 1.6e-116 424.5 787 38.8
Carub.0006s2449 Capsella rubella HOM05D005824 ORTHO05D007029 1.1e-115 421.8 769 39.0
CARHR186810 Cardamine hirsuta HOM05D005824 ORTHO05D007029 6.4e-113 412.5 786 38.0
ATR0693G066 Amborella trichopoda HOM05D005824 ORTHO05D007029 8.3e-113 412.1 683 39.4
Nitab4.5_0002783g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 2.5e-109 400.6 700 39.6
AT5G26760 Arabidopsis thaliana HOM05D005824 ORTHO05D007029 1.2e-108 398.3 809 36.8
CDE01G0540 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 4.7e-108 396.4 716 36.3
Ciclev10011677m.g Citrus clementina HOM05D005824 ORTHO05D007029 6.4e-105 386.0 509 47.5
Lsat_1_v5_gn_9_78801 Lactuca sativa HOM05D005824 ORTHO05D007029 2.4e-104 384.0 671 39.6
unitig_748.g6998 Utricularia gibba HOM05D005824 ORTHO05D000260 1.2e-103 381.7 689 37.3
AL6G38630 Arabidopsis lyrata HOM05D005824 ORTHO05D007029 2.1e-103 380.9 868 34.2
HanXRQChr12g0362901 Helianthus annuus HOM05D005824 ORTHO05D007029 1.7e-102 377.9 705 39.4
PGR083G1123 Punica granatum HOM05D005824 ORTHO05D007029 4.0e-99 366.7 548 43.6
BraA02t08872Z Brassica rapa HOM05D005824 ORTHO05D007029 6.9e-99 365.9 903 33.3
C02p58640 Brassica napus HOM05D005824 ORTHO05D007029 1.2e-98 365.2 824 34.6
A02p39030 Brassica napus HOM05D005824 ORTHO05D007029 7.6e-98 362.5 902 33.0
BolC2t11924H Brassica oleracea HOM05D005824 ORTHO05D007029 2.2e-97 360.9 829 34.9
BcaNung06222 Brassica carinata HOM05D005824 ORTHO05D007029 2.4e-83 314.3 824 33.3
Os05g0134300 Oryza sativa ssp. japonica HOM05D005824 ORTHO05D007029 8.7e-78 295.8 776 32.0
Actinidia35501 Actinidia chinensis HOM05D005824 ORTHO05D007029 7.4e-77 292.7 688 34.2
C07p41490 Brassica napus HOM05D005824 ORTHO05D007029 2.6e-74 284.3 717 33.5
BolC7t44682H Brassica oleracea HOM05D005824 ORTHO05D007029 1.9e-72 278.1 729 33.2
BcaNung03676 Brassica carinata HOM05D005824 ORTHO05D007029 4.2e-72 276.9 712 33.0
Mapoly0075s0015 Marchantia polymorpha HOM05D005824 ORTHO05D007029 1.5e-61 241.9 745 28.1
HPP92_021934 Vanilla planifolia HOM05D005824 ORTHO05D007029 5.9e-58 229.9 258 46.9
Gohir.A08G201701 Gossypium hirsutum HOM05D005824 ORTHO05D007029 1.4e-56 225.3 716 30.3
Solyc01g101010.4 Solanum lycopersicum HOM05D005824 ORTHO05D007029 3.9e-54 217.2 364 41.2
SEGI_20129 Sequoiadendron giganteum HOM05D005824 ORTHO05D007029 3.3e-53 214.2 402 38.1
Nitab4.5_0000185g0370 Nicotiana tabacum HOM05D005824 ORTHO05D007029 2.4e-51 208.0 270 44.1
Zm00001eb354720 Zea mays HOM05D005824 ORTHO05D007029 1.0e-49 202.6 687 30.3
SMO203G0090 Selaginella moellendorffii HOM05D005824 ORTHO05D007029 5.2e-46 190.3 691 25.3
Hma1.2p1_1553F.1_g290340 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 7.4e-45 186.4 690 29.4
Pp3c6_10400 Physcomitrium patens HOM05D005824 ORTHO05D007029 1.3e-44 185.7 889 26.0
AagrBONN_evm.TU.Sc2ySwM_117.2728 Anthoceros agrestis HOM05D005824 ORTHO05D007029 5.9e-42 176.8 696 29.3
SGA_v2.0_scaffold438G51629 Striga asiatica HOM05D005824 ORTHO05D007029 6.1e-39 166.8 213 45.5
A06p36990 Brassica napus HOM05D005824 ORTHO05D007029 4.0e-38 164.1 176 50.6
BraA06t26625Z Brassica rapa HOM05D005824 ORTHO05D007029 4.0e-38 164.1 176 50.6
CBR_g20185 Chara braunii HOM05D005824 ORTHO05D007029 8.5e-33 146.4 305 30.8
Oeu060660.1 Olea europaea HOM05D005824 ORTHO05D007029 4.7e-31 140.6 123 61.8
Dinv30929 Davidia involucrata HOM05D005824 ORTHO05D007029 5.4e-27 127.1 144 47.9
Cfa020079 Carpinus fangiana HOM05D005824 ORTHO05D007029 1.6e-26 125.6 82 72.0
HPP92_021933 Vanilla planifolia HOM05D005824 ORTHO05D007029 1.0e-25 122.9 194 38.7
CANSAT54G0922 Cannabis sativa HOM05D005824 ORTHO05D007029 1.1e-24 119.4 239 37.7
Zm00001eb056090 Zea mays HOM05D000739 ORTHO05D007029 5.9e-18 97.1 112 42.9
Nitab4.5_0000185g0350 Nicotiana tabacum HOM05D005824 ORTHO05D007029 6.6e-17 93.6 90 54.4
Zm00001eb289330 Zea mays HOM05D005824 ORTHO05D007029 1.1e-16 92.8 100 45.0
CDE12G0845 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 3.3e-16 91.3 95 51.6
AUR62009842 Chenopodium quinoa HOM05D003327 ORTHO05D004535 6.6e-09 67.0 196 33.2
VMungo0251G1262 Vigna mungo HOM05D005824 ORTHO05D007029 4.0e-06 57.8 81 49.4


User provided reference genes

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