Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD11G1235900 Malus domestica HOM05D005363 ORTHO05D006607 0.0e+00 1338.6 725 100.0
MD03G1218100 Malus domestica HOM05D005363 ORTHO05D006607 0.0e+00 1257.3 727 94.5
Prupe.4G191100 Prunus persica HOM05D005363 ORTHO05D006607 0.0e+00 1191.8 724 86.9
CiPaw.11G177000 Carya illinoinensis HOM05D005363 ORTHO05D006607 0.0e+00 1132.1 728 81.6
CANSAT11G0579 Cannabis sativa HOM05D005363 ORTHO05D006607 0.0e+00 1090.5 730 79.5
Thecc.07G070700 Theobroma cacao HOM05D005363 ORTHO05D006607 0.0e+00 1088.6 734 78.9
RcHm_v2.0_Chr5g0036071 Rosa chinensis HOM05D005363 ORTHO05D006607 0.0e+00 1087.8 725 80.8
QL08p017669 Quercus lobata HOM05D005363 ORTHO05D006607 0.0e+00 1078.9 781 74.8
Duzib170G0704 Durio zibethinus HOM05D005363 ORTHO05D006607 0.0e+00 1075.5 730 79.0
Manes.15G082900 Manihot esculenta HOM05D005363 ORTHO05D006607 3.8e-310 1067.8 733 78.4
Potri.001G407300 Populus trichocarpa HOM05D005363 ORTHO05D006607 3.2e-309 1064.7 734 79.4
GSVIVG01014441001 Vitis vinifera HOM05D005363 ORTHO05D006607 4.6e-308 1060.8 733 79.1
Ciclev10007579m.g Citrus clementina HOM05D005363 ORTHO05D006607 1.7e-307 1058.9 735 77.6
FAN11G3021 Fragaria x ananassa HOM05D005363 ORTHO05D006607 7.3e-306 1053.5 727 81.2
TAR629G3355 Trochodendron aralioides HOM05D005363 ORTHO05D006607 1.2e-305 1052.7 730 76.4
Glyma.12G219100 Glycine max HOM05D005363 ORTHO05D006607 3.6e-305 1051.2 718 77.7
FvH4_3g21040 Fragaria vesca HOM05D005363 ORTHO05D006607 6.2e-305 1050.4 727 81.0
Actinidia35283 Actinidia chinensis HOM05D005363 ORTHO05D006607 3.1e-304 1048.1 730 77.8
COL.COLO4_09485 Corchorus olitorius HOM05D005363 ORTHO05D006607 5.2e-304 1047.3 732 77.2
CSS0003917 Camellia sinensis var. sinensis HOM05D005363 ORTHO05D006607 1.4e-301 1039.3 718 77.6
FAN21G3123 Fragaria x ananassa HOM05D005363 ORTHO05D006607 1.9e-301 1038.9 722 77.0
MSTRG.5819 Avicennia marina HOM05D005363 ORTHO05D006607 3.2e-301 1038.1 739 75.8
Cpa.g.sc12.44 Carica papaya HOM05D005363 ORTHO05D006607 7.1e-301 1036.9 722 77.8
Psat2g184560 Pisum sativum HOM05D005363 ORTHO05D006607 7.1e-301 1036.9 717 78.8
Sc03g0009580 Simmondsia chinensis HOM05D005363 ORTHO05D006607 3.9e-299 1031.2 724 75.8
Lalb_Chr25g0286791 Lupinus albus HOM05D005363 ORTHO05D006607 8.7e-299 1030.0 727 75.9
Oeu009902.1 Olea europaea HOM05D005363 ORTHO05D006607 2.8e-297 1025.0 737 75.7
arahy.Tifrunner.gnm1.ann1.42XSYF Arachis hypogaea HOM05D005363 ORTHO05D006607 3.6e-297 1024.6 723 75.9
Lj3g0015043 Lotus japonicus HOM05D005363 ORTHO05D006607 8.1e-297 1023.5 726 78.9
arahy.Tifrunner.gnm1.ann1.3P80NP Arachis hypogaea HOM05D005363 ORTHO05D006607 4.0e-296 1021.1 723 75.7
Phvul.005G085700 Phaseolus vulgaris HOM05D005363 ORTHO05D006607 2.0e-295 1018.8 721 75.0
FAN25G3415 Fragaria x ananassa HOM05D005363 ORTHO05D006607 3.4e-295 1018.1 728 79.1
Gorai.009G430700 Gossypium raimondii HOM05D005363 ORTHO05D006607 9.9e-295 1016.5 729 74.8
Dinv08347 Davidia involucrata HOM05D005363 ORTHO05D006607 6.4e-294 1013.8 749 74.2
CsaV3_3G044350 Cucumis sativus L. HOM05D005363 ORTHO05D006607 3.2e-293 1011.5 728 76.0
Gohir.D05G362100 Gossypium hirsutum HOM05D005363 ORTHO05D006607 7.1e-293 1010.4 729 74.5
ClCG11G018480 Citrullus lanatus HOM05D005363 ORTHO05D006607 2.7e-292 1008.4 718 75.5
ECA240G2604 Erigeron canadensis HOM05D005363 ORTHO05D006607 4.6e-292 1007.7 728 74.2
Migut.J00972 Erythranthe guttata HOM05D005363 ORTHO05D006607 1.8e-291 1005.7 729 75.3
Nn1g03887 Nelumbo nucifera HOM05D005363 ORTHO05D006607 1.8e-291 1005.7 725 74.6
vmacro09564 Vaccinium macrocarpon HOM05D005363 ORTHO05D006607 5.1e-291 1004.2 684 78.7
PGR083G1158 Punica granatum HOM05D005363 ORTHO05D006607 8.7e-291 1003.4 735 74.6
Medtr2g081100 Medicago truncatula HOM05D005363 ORTHO05D006607 1.1e-290 1003.0 706 76.5
Sed0012869 Sechium edule HOM05D005363 ORTHO05D006607 1.9e-290 1002.3 713 75.9
Sabra16G0268700 Salix brachista HOM05D005363 ORTHO05D006607 6.2e-289 997.3 723 76.2
Haze_09533 Corylus avellana HOM05D005363 ORTHO05D006607 3.1e-288 995.0 799 70.5
SalBow3G2312 Salvia bowleyana HOM05D005363 ORTHO05D006607 4.0e-288 994.6 755 71.7
HanXRQChr03g0077211 Helianthus annuus HOM05D005363 ORTHO05D006607 6.9e-288 993.8 729 71.7
PSO210G7030 Papaver somniferum HOM05D005363 ORTHO05D006607 9.0e-288 993.4 737 74.1
PSO832G2870 Papaver somniferum HOM05D005363 ORTHO05D006607 1.1e-285 986.5 737 72.5
Lsat_1_v5_gn_9_95600 Lactuca sativa HOM05D005363 ORTHO05D006607 5.5e-285 984.2 730 73.8
SGA_v2.0_scaffold13G06767 Striga asiatica HOM05D005363 ORTHO05D006607 1.1e-282 976.5 744 71.4
EL10Ac4g08052 Beta vulgaris HOM05D005363 ORTHO05D006607 2.5e-282 975.3 764 69.4
CARHR267540 Cardamine hirsuta HOM05D005363 ORTHO05D006607 2.5e-282 975.3 729 74.3
Hma1.2p1_1176F.1_g264200 Hydrangea macrophylla HOM05D005363 ORTHO05D006607 3.3e-282 974.9 780 69.6
Aa31LG3G10220 Aethionema arabicum HOM05D005363 ORTHO05D006607 7.4e-282 973.8 726 73.1
Aqoxy1G03881 Aquilegia oxysepala HOM05D005363 ORTHO05D006607 1.3e-281 973.0 732 72.5
Gohir.D01G056400 Gossypium hirsutum HOM05D005363 ORTHO05D006607 1.6e-281 972.6 712 74.6
AT5G54260 Arabidopsis thaliana HOM05D005363 ORTHO05D006607 2.4e-280 968.8 726 73.7
Sp6g16300 Schrenkiella parvula HOM05D005363 ORTHO05D006607 4.0e-280 968.0 725 73.2
Sabra16G0270900 Salix brachista HOM05D005363 ORTHO05D006607 5.3e-280 967.6 669 78.5
Hund02186 Selenicereus undatus HOM05D005363 ORTHO05D006607 2.9e-278 961.8 751 70.0
Thhalv10012804m.g Eutrema salsugineum HOM05D005363 ORTHO05D006607 1.4e-277 959.5 726 73.1
ATR0693G020 Amborella trichopoda HOM05D005363 ORTHO05D006607 7.1e-277 957.2 711 71.3
TPR.G32857 Trifolium pratense HOM05D005363 ORTHO05D006607 7.1e-277 957.2 716 73.5
Carub.0008s1460 Capsella rubella HOM05D005363 ORTHO05D006607 1.6e-276 956.1 608 81.7
BcaB08g35781 Brassica carinata HOM05D005363 ORTHO05D006607 6.0e-276 954.1 725 73.5
BcaC04g20356 Brassica carinata HOM05D005363 ORTHO05D006607 3.0e-275 951.8 725 73.1
AL8G29590 Arabidopsis lyrata HOM05D005363 ORTHO05D006607 1.1e-274 949.9 705 75.0
RhsimUnG0258300 Rhododendron simsii HOM05D005363 ORTHO05D006607 4.8e-273 944.5 671 74.8
BolC9t57330H Brassica oleracea HOM05D005363 ORTHO05D006607 4.1e-272 941.4 733 71.9
CAN.G824.3 Capsicum annuum HOM05D005363 ORTHO05D006607 2.0e-271 939.1 672 74.0
BraA10t43250Z Brassica rapa HOM05D005363 ORTHO05D006607 4.5e-271 937.9 731 72.4
Sopen09g004090 Solanum pennellii HOM05D005363 ORTHO05D006607 1.0e-270 936.8 554 83.0
Gorai.002G076500 Gossypium raimondii HOM05D005363 ORTHO05D006607 2.9e-270 935.3 734 71.1
THA.LOC104813315 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 3.2e-269 931.8 507 87.8
HPP92_026561 Vanilla planifolia HOM05D005363 ORTHO05D006607 1.2e-268 929.9 709 68.8
C09p44570 Brassica napus HOM05D005363 ORTHO05D006607 1.6e-268 929.5 656 76.5
Lj8C160T16 Lonicera japonica HOM05D005363 ORTHO05D006607 2.7e-268 928.7 741 71.3
A10p11550 Brassica napus HOM05D005363 ORTHO05D006607 6.1e-268 927.5 658 76.1
HPP92_026534 Vanilla planifolia HOM05D005363 ORTHO05D006607 1.1e-264 916.8 723 66.8
SHI33827 Sapria himalayana HOM05D005363 ORTHO05D006607 5.9e-263 911.0 722 65.9
Cc06_g05460 Coffea canephora HOM05D005363 ORTHO05D006607 1.0e-262 910.2 504 87.3
MBI15_g19746_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 2.5e-261 905.6 675 73.2
Peaxi162Scf00290g00111 Petunia axillaris HOM05D005363 ORTHO05D006607 1.2e-260 903.3 622 77.0
DCAR_018424 Daucus carota HOM05D005363 ORTHO05D006607 7.9e-260 900.6 648 76.4
Os04g0635900 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 1.4e-259 899.8 722 66.5
unitig_8.g4146 Utricularia gibba HOM05D005363 ORTHO05D006607 2.0e-258 896.0 723 66.7
MELO3C018187.2 Cucumis melo HOM05D005363 ORTHO05D006607 9.7e-258 893.6 727 72.2
Zm00001eb069270 Zea mays HOM05D005363 ORTHO05D006607 4.5e-255 884.8 721 66.6
Gohir.A04G025700 Gossypium hirsutum HOM05D005363 ORTHO05D006607 1.0e-254 883.6 742 67.1
VMungo1080G1535 Vigna mungo HOM05D005363 ORTHO05D006607 4.0e-243 845.1 472 85.6
FAN16G0276 Fragaria x ananassa HOM05D005363 ORTHO05D006607 2.0e-242 842.8 731 69.5
AUR62029306 Chenopodium quinoa HOM05D005363 ORTHO05D006607 4.4e-242 841.6 798 59.4
Gohir.A04G026000 Gossypium hirsutum HOM05D005363 ORTHO05D006607 4.2e-229 798.5 626 70.4
AUR62015595 Chenopodium quinoa HOM05D005363 ORTHO05D006607 5.5e-229 798.1 614 67.8
AagrBONN_evm.TU.Sc2ySwM_117.2240 Anthoceros agrestis HOM05D005363 ORTHO05D006607 9.5e-221 770.8 721 60.5
Mapoly0023s0117 Marchantia polymorpha HOM05D005363 ORTHO05D006607 1.2e-218 763.8 742 56.9
Pp3c24_2350 Physcomitrium patens HOM05D005363 ORTHO05D006607 2.4e-216 756.1 537 68.0
SMO347G0170 Selaginella moellendorffii HOM05D005363 ORTHO05D006607 1.1e-205 720.7 505 67.9
CDE12G0672 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 5.8e-194 681.8 409 80.7
Atru.chr2.2913 Acer truncatum HOM05D005363 ORTHO05D006607 1.1e-187 661.0 345 90.4
CBR_g48040 Chara braunii HOM05D005363 ORTHO05D006607 1.1e-181 641.0 544 57.9
Nitab4.5_0001969g0080 Nicotiana tabacum HOM05D005363 ORTHO05D006607 3.4e-178 629.4 694 56.3
Zm00001eb171920 Zea mays HOM05D005363 ORTHO05D006607 2.1e-172 610.1 470 61.9
Os08g0177600 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 4.5e-170 602.4 469 61.2
Eucgr.F01076 Eucalyptus grandis HOM05D005363 ORTHO05D006607 1.8e-166 590.5 548 63.7
Ca_01813_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 1.4e-163 580.9 360 78.9
Nitab4.5_0007366g0050 Nicotiana tabacum HOM05D005363 ORTHO05D006607 5.7e-157 558.9 541 62.1
Cre12.g556911 Chlamydomonas reinhardtii HOM05D005363 ORTHO05D006607 3.1e-131 473.4 541 47.1
unitig_13.g31430 Utricularia gibba HOM05D005363 ORTHO05D006607 1.4e-126 458.0 510 53.7
MCO13G379 Micromonas commoda HOM05D005363 ORTHO05D006607 7.5e-125 452.2 563 45.1
SEGI_22122 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 1.1e-115 421.8 255 77.6
PRCOL_00003292 Prasinoderma coloniale HOM05D005363 ORTHO05D006607 2.5e-112 410.6 552 43.1
Atru.chr2.2912 Acer truncatum HOM05D005363 ORTHO05D006607 5.2e-102 376.3 376 65.4
Cfa025591 Carpinus fangiana HOM05D005363 ORTHO05D006607 2.0e-101 374.4 517 40.4
Nitab4.5_0007366g0060 Nicotiana tabacum HOM05D005363 ORTHO05D006607 4.1e-99 366.7 214 83.2
PGSC0003DMG400002669 Solanum tuberosum HOM05D005363 ORTHO05D006607 1.6e-90 338.2 176 90.3
CAN.G397.4 Capsicum annuum HOM05D005363 ORTHO05D006607 1.1e-83 315.5 263 63.5
Eucgr.C01186 Eucalyptus grandis HOM05D005363 ORTHO05D006607 2.1e-71 274.6 362 55.0
MBI09_g27609_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 4.9e-68 263.5 156 79.5
CDE12G0057 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 8.7e-57 226.1 172 65.7
CDE12G0487 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 9.6e-56 222.6 309 47.9
Ca_30473_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 4.0e-46 190.7 240 58.3
Ca_01800_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 6.9e-46 189.9 276 53.6
SEGI_32923 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 1.2e-42 179.1 97 84.5
SEGI_35588 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 3.3e-40 171.0 294 44.2
GSVIVG01001519001 Vitis vinifera HOM05D005363 ORTHO05D006607 1.7e-31 142.1 96 75.0
CDE12G0011 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 1.5e-24 119.0 76 81.6
Cc06_g05450 Coffea canephora HOM05D005363 ORTHO05D006607 7.0e-22 110.2 226 46.5
arahy.Tifrunner.gnm1.ann1.Q8WXS4 Arachis hypogaea HOM05D005363 ORTHO05D006607 1.6e-18 99.0 113 51.3
THA.LOC104811844 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 1.1e-14 86.3 201 48.8
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.6e-10 72.4 184 36.4
Sopen00g012230 Solanum pennellii HOM05D005363 ORTHO05D006607 1.0e-09 69.7 79 60.8
Sopen00g013530 Solanum pennellii HOM05D005363 ORTHO05D006607 1.5e-08 65.9 61 65.6
GSVIVG01001488001 Vitis vinifera HOM05D005363 ORTHO05D006607 8.3e-07 60.1 143 36.4
GSVIVG01002726001 Vitis vinifera HOM05D005363 ORTHO05D006607 1.1e-06 59.7 143 36.4


User provided reference genes

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