Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD11G1211500 Malus domestica HOM05D005584 ORTHO05D006809 1.1e-127 459.9 231 100.0
Prupe.4G221000 Prunus persica HOM05D005584 ORTHO05D006809 3.3e-103 378.6 231 82.3
RcHm_v2.0_Chr5g0041131 Rosa chinensis HOM05D005584 ORTHO05D006809 1.8e-93 346.3 231 75.8
FvH4_3g23340 Fragaria vesca HOM05D005584 ORTHO05D006809 9.1e-93 344.0 231 75.3
FAN21G3548 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.2e-89 333.6 231 73.6
FAN25G2737 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.2e-89 333.6 231 74.0
CiPaw.05G185800 Carya illinoinensis HOM05D005584 ORTHO05D006809 1.0e-88 330.5 233 74.2
FAN16G0047 Fragaria x ananassa HOM05D005584 ORTHO05D006809 2.3e-88 329.3 231 72.3
COL.COLO4_24203 Corchorus olitorius HOM05D005584 ORTHO05D006809 4.0e-88 328.6 231 70.6
Duzib251G0376 Durio zibethinus HOM05D005584 ORTHO05D006809 6.8e-88 327.8 232 71.6
Thecc.02G253500 Theobroma cacao HOM05D005584 ORTHO05D006809 1.5e-87 326.6 232 71.6
Manes.12G026800 Manihot esculenta HOM05D005584 ORTHO05D006809 2.2e-86 322.8 232 71.1
Gohir.A01G162200 Gossypium hirsutum HOM05D005584 ORTHO05D006809 1.8e-85 319.7 232 69.0
Potri.009G167600 Populus trichocarpa HOM05D005584 ORTHO05D006809 2.4e-85 319.3 236 70.3
QL03p059496 Quercus lobata HOM05D005584 ORTHO05D006809 1.6e-84 316.6 237 69.2
CANSAT56G2850 Cannabis sativa HOM05D005584 ORTHO05D006809 2.0e-84 316.2 231 67.5
Ciclev10032655m.g Citrus clementina HOM05D005584 ORTHO05D006809 2.7e-84 315.8 231 68.8
TWI18G1102 Tripterygium wilfordii HOM05D005584 ORTHO05D006809 3.5e-84 315.5 233 69.5
TAR374G1289 Trochodendron aralioides HOM05D005584 ORTHO05D006809 5.9e-84 314.7 231 68.4
Sabra09G0130200 Salix brachista HOM05D005584 ORTHO05D006809 1.0e-83 313.9 236 70.3
Gohir.D08G021700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 2.3e-83 312.8 232 67.7
Dinv15274 Davidia involucrata HOM05D001482 ORTHO05D001499 6.5e-83 311.2 231 67.1
Gohir.D05G347832 Gossypium hirsutum HOM05D005584 ORTHO05D006809 6.5e-83 311.2 232 67.7
FAN11G0752 Fragaria x ananassa HOM05D005584 ORTHO05D006809 8.6e-83 310.8 205 75.1
Gohir.D01G149500 Gossypium hirsutum HOM05D005584 ORTHO05D006809 2.5e-82 309.3 232 67.2
Atru.chr11.2060 Acer truncatum HOM05D005584 ORTHO05D006809 4.2e-82 308.5 231 67.5
Cpa.g.sc69.68 Carica papaya HOM05D005584 ORTHO05D006809 2.8e-81 305.8 231 64.9
GSVIVG01013774001 Vitis vinifera HOM05D005584 ORTHO05D006809 3.6e-81 305.4 231 66.2
CSS0030415 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 3.4e-79 298.9 231 66.2
Ca_28318_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 3.4e-79 298.9 231 67.5
arahy.Tifrunner.gnm1.ann1.0L0HR0 Arachis hypogaea HOM05D005584 ORTHO05D006809 4.4e-79 298.5 232 66.4
arahy.Tifrunner.gnm1.ann1.5FW2L6 Arachis hypogaea HOM05D005584 ORTHO05D006809 4.4e-79 298.5 232 66.4
Hma1.2p1_0587F.1_g184080 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 1.3e-78 297.0 231 65.4
Actinidia08155 Actinidia chinensis HOM05D005584 ORTHO05D006809 2.2e-78 296.2 232 65.5
Cfa009174 Carpinus fangiana HOM05D005584 ORTHO05D006809 6.3e-78 294.7 208 72.1
Medtr5g077780 Medicago truncatula HOM05D005584 ORTHO05D006809 8.3e-78 294.3 231 65.4
PGSC0003DMG400033619 Solanum tuberosum HOM05D005584 ORTHO05D006809 3.1e-77 292.4 233 63.5
Lalb_Chr12g0210051 Lupinus albus HOM05D005584 ORTHO05D006809 4.1e-77 292.0 231 64.5
vmacro01156 Vaccinium macrocarpon HOM05D005584 ORTHO05D006809 4.1e-77 292.0 232 63.8
Sopen08g021760 Solanum pennellii HOM05D005584 ORTHO05D006809 5.4e-77 291.6 233 63.5
Haze_12208 Corylus avellana HOM05D005584 ORTHO05D006809 2.7e-76 289.3 232 67.2
PGR142G0158 Punica granatum HOM05D005584 ORTHO05D006809 3.5e-76 288.9 232 65.5
Solyc08g067820.3 Solanum lycopersicum HOM05D005584 ORTHO05D006809 2.3e-75 286.2 233 61.8
Nn2g14080 Nelumbo nucifera HOM05D005584 ORTHO05D006809 2.9e-75 285.8 233 62.2
AUR62014068 Chenopodium quinoa HOM05D005584 ORTHO05D006809 3.8e-75 285.4 239 61.1
Lj1g0002439 Lotus japonicus HOM05D005584 ORTHO05D006809 6.6e-75 284.6 231 64.5
CSS0021029 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 8.6e-75 284.3 231 63.6
Eucgr.K03598 Eucalyptus grandis HOM05D005584 ORTHO05D006809 3.3e-74 282.3 231 63.2
Phvul.011G052800 Phaseolus vulgaris HOM05D005584 ORTHO05D006809 4.3e-74 282.0 231 64.1
Sed0009924 Sechium edule HOM05D005584 ORTHO05D006809 9.5e-74 280.8 231 62.8
Lj3g0022996 Lotus japonicus HOM05D005584 ORTHO05D006809 2.1e-73 279.6 231 63.6
Nn4g22723 Nelumbo nucifera HOM05D005584 ORTHO05D006809 3.6e-73 278.9 233 61.4
PSO017G5970 Papaver somniferum HOM05D005584 ORTHO05D006809 3.6e-73 278.9 231 62.3
Carub.0004s0855 Capsella rubella HOM05D005584 ORTHO05D006809 1.4e-72 276.9 237 63.7
AL4G22490 Arabidopsis lyrata HOM05D005584 ORTHO05D006809 1.8e-72 276.6 238 64.7
Psat2g045680 Pisum sativum HOM05D005584 ORTHO05D006809 4.0e-72 275.4 231 64.5
CsaV3_2G024710 Cucumis sativus L. HOM05D005584 ORTHO05D006809 5.2e-72 275.0 231 62.8
Thhalv10017205m.g Eutrema salsugineum HOM05D005584 ORTHO05D006809 1.2e-71 273.9 241 63.1
Oeu056410.1 Olea europaea HOM05D005584 ORTHO05D006809 1.2e-71 273.9 231 61.0
A07p18380 Brassica napus HOM05D005584 ORTHO05D006809 1.5e-71 273.5 240 60.8
BraA07t29554Z Brassica rapa HOM05D005584 ORTHO05D006809 1.5e-71 273.5 240 60.8
Migut.E00177 Erythranthe guttata HOM05D005584 ORTHO05D006809 2.6e-71 272.7 233 60.5
Sp4g10620 Schrenkiella parvula HOM05D005584 ORTHO05D006809 3.4e-71 272.3 241 62.7
Aqoxy3G01083 Aquilegia oxysepala HOM05D005584 ORTHO05D006809 9.8e-71 270.8 232 61.6
PSO478G2901 Papaver somniferum HOM05D005584 ORTHO05D006809 1.3e-70 270.4 231 61.5
MSTRG.2403 Avicennia marina HOM05D005584 ORTHO05D006809 4.9e-70 268.5 231 61.9
CARHR120490 Cardamine hirsuta HOM05D005584 ORTHO05D006809 1.4e-69 266.9 237 62.4
BcaC02g10906 Brassica carinata HOM05D005584 ORTHO05D006809 1.9e-69 266.5 240 59.6
MBI10_g28000_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.9e-69 266.5 239 60.7
Peaxi162Scf00105g01417 Petunia axillaris HOM05D005584 ORTHO05D006809 4.1e-69 265.4 223 61.9
BcaB02g10116 Brassica carinata HOM05D005584 ORTHO05D006809 5.4e-69 265.0 212 66.0
C04p23810 Brassica napus HOM05D005584 ORTHO05D006809 5.4e-69 265.0 240 59.2
BolC4t23879H Brassica oleracea HOM05D005584 ORTHO05D006809 2.7e-68 262.7 240 58.8
Cc08_g15830 Coffea canephora HOM05D005584 ORTHO05D006809 2.3e-67 259.6 232 58.6
Hund25366 Selenicereus undatus HOM05D005584 ORTHO05D003410 3.0e-67 259.2 274 52.9
VMungo1127G1231 Vigna mungo HOM05D005584 ORTHO05D006809 7.3e-66 254.6 206 63.6
ECA233G2638 Erigeron canadensis HOM05D005584 ORTHO05D006809 1.2e-65 253.8 231 58.4
Lsat_1_v5_gn_9_120260 Lactuca sativa HOM05D005584 ORTHO05D006809 1.6e-65 253.4 234 57.7
SalBow8G4058 Salvia bowleyana HOM05D005584 ORTHO05D006809 1.8e-64 250.0 224 60.3
Rhsim12G0043700 Rhododendron simsii HOM05D005584 ORTHO05D006809 3.1e-64 249.2 240 56.2
Aa31LG5G8210 Aethionema arabicum HOM05D005584 ORTHO05D006809 6.8e-64 248.1 268 52.6
ClCG08G017930 Citrullus lanatus HOM05D005584 ORTHO05D006809 8.9e-64 247.7 212 62.7
Gorai.009G374800 Gossypium raimondii HOM05D005584 ORTHO05D006809 8.9e-64 247.7 232 58.6
unitig_62.g23668 Utricularia gibba HOM05D005584 ORTHO05D006809 2.0e-63 246.5 233 57.5
SGA_v2.0_scaffold57G20112 Striga asiatica HOM05D005584 ORTHO05D006809 2.6e-63 246.1 208 62.5
Glyma.12G050500 Glycine max HOM05D005584 ORTHO05D006809 1.9e-61 240.0 187 65.2
HanXRQChr12g0371541 Helianthus annuus HOM05D005584 ORTHO05D006809 3.2e-61 239.2 210 59.0
Nitab4.5_0006579g0040 Nicotiana tabacum HOM05D005584 ORTHO05D006809 1.0e-59 234.2 188 60.6
Nitab4.5_0000125g0200 Nicotiana tabacum HOM05D005584 ORTHO05D006809 4.3e-58 228.8 161 67.7
AT5G27300 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 1.2e-57 227.3 224 58.5
AUR62005408 Chenopodium quinoa HOM05D005584 ORTHO05D006809 3.6e-57 225.7 239 52.7
Gorai.002G185600 Gossypium raimondii HOM05D005584 ORTHO05D006809 1.4e-56 223.8 233 54.5
Lj6A807T86 Lonicera japonica HOM05D005584 ORTHO05D006809 2.3e-56 223.0 233 53.6
Zm00001eb209860 Zea mays HOM05D005584 ORTHO05D006809 6.8e-56 221.5 267 49.1
Dinv24830 Davidia involucrata HOM05D005584 ORTHO05D006809 2.0e-55 219.9 179 65.9
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 2.0e-55 219.9 232 54.7
EL10Ac6g13701 Beta vulgaris HOM05D005584 ORTHO05D006809 3.4e-55 219.2 231 53.7
HPP92_004538 Vanilla planifolia HOM05D005584 ORTHO05D006809 1.3e-54 217.2 219 55.3
CDE06G1284 Ceratophyllum demersum HOM05D005584 ORTHO05D006809 2.9e-54 216.1 235 51.5
SGA_v2.0_scaffold74G24685 Striga asiatica HOM05D005584 ORTHO05D006809 1.3e-51 207.2 202 57.9
TPR.G25316 Trifolium pratense HOM05D005584 ORTHO05D006809 3.0e-51 206.1 122 79.5
Hma1.2p1_0223F.1_g094390 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 4.3e-50 202.2 179 60.3
Potri.006G221301 Populus trichocarpa HOM05D005584 ORTHO05D006809 7.3e-50 201.4 223 52.9
ATR1091G072 Amborella trichopoda HOM05D005584 ORTHO05D006809 1.6e-49 200.3 207 53.6
Gorai.001G098200 Gossypium raimondii HOM05D005584 ORTHO05D006809 6.8e-48 194.9 214 49.1
Lsat_1_v5_gn_8_155560 Lactuca sativa HOM05D005584 ORTHO05D006809 8.4e-46 188.0 210 50.5
SEGI_24248 Sequoiadendron giganteum HOM05D005584 ORTHO05D006809 5.4e-45 185.3 257 45.1
BcaB06g28170 Brassica carinata HOM05D005584 ORTHO05D006809 9.2e-45 184.5 127 67.7
MELO3C010671.2 Cucumis melo HOM05D005584 ORTHO05D006809 4.6e-44 182.2 233 48.1
Eucgr.D00612 Eucalyptus grandis HOM05D005584 ORTHO05D006809 3.9e-43 179.1 187 52.9
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 8.7e-43 177.9 105 74.3
Mapoly0029s0094 Marchantia polymorpha HOM05D005584 ORTHO05D006809 1.1e-42 177.6 219 46.6
Pp3c16_13430 Physcomitrium patens HOM05D005584 ORTHO05D006809 4.7e-41 172.2 253 44.3
AT2G27790 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 6.9e-40 168.3 199 53.3
DCAR_026533 Daucus carota HOM05D005584 ORTHO05D006809 2.9e-38 162.9 173 54.3
Sc11g0001080 Simmondsia chinensis HOM05D005584 ORTHO05D006809 4.9e-38 162.2 179 52.5
Ah.02g130030 Amaranthus hybridus HOM05D005584 ORTHO05D006809 1.9e-37 160.2 183 50.3
CAN.G21.11 Capsicum annuum HOM05D005584 ORTHO05D006809 8.7e-27 124.8 101 59.4
QL01p007518 Quercus lobata HOM05D005584 ORTHO05D006809 2.1e-25 120.2 178 42.7
Hund18879 Selenicereus undatus HOM05D005584 ORTHO05D006809 5.3e-24 115.5 171 44.4
COL.COLO4_24201 Corchorus olitorius HOM05D005584 ORTHO05D006809 2.2e-22 110.2 57 82.5
SHI17678 Sapria himalayana HOM05D005584 ORTHO05D006809 4.9e-22 109.0 70 74.3
SMO361G0752 Selaginella moellendorffii HOM05D005584 ORTHO05D006809 4.3e-18 95.9 67 56.7
Ca_05838_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 7.4e-18 95.1 49 87.8
CBR_g19306 Chara braunii HOM05D005584 ORTHO05D006809 8.2e-17 91.7 89 50.6
Gorai.004G016800 Gossypium raimondii HOM05D005584 ORTHO05D006809 4.0e-16 89.4 71 66.2
BcaB05g23234 Brassica carinata HOM05D005584 ORTHO05D006809 4.5e-15 85.9 77 61.0
CAN.G414.8 Capsicum annuum HOM05D000928 ORTHO05D001186 7.6e-15 85.1 50 68.0
Os02g0105000 Oryza sativa ssp. japonica HOM05D005584 ORTHO05D006809 1.2e-12 77.8 58 65.5
Gohir.D07G091700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 1.6e-12 77.4 91 47.3
Gohir.A07G086801 Gossypium hirsutum HOM05D005584 ORTHO05D006809 4.6e-12 75.9 78 50.0
MBI12_g21981_MAGBIO Magnolia biondii HOM05D001465 ORTHO05D001434 1.1e-10 71.2 48 68.8
MBI02_g44783_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 2.5e-10 70.1 48 68.8
MBI02_g20871_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 3.3e-10 69.7 48 68.8
MBI02_g25373_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 7.4e-10 68.6 48 66.7
MBI14_g03623_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D006809 7.4e-10 68.6 48 64.6
Glyma.11G125900 Glycine max HOM05D005584 ORTHO05D006809 3.1e-08 63.2 29 96.6
MBI19_g26621_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 4.1e-08 62.8 43 65.1
MBI14_g10639_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 9.0e-08 61.6 43 65.1
MBI03_g02127_MAGBIO Magnolia biondii HOM05D002786 ORTHO05D006809 5.9e-07 58.9 42 61.9


User provided reference genes

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