Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1037300 Malus domestica HOM05D004425 ORTHO05D005783 1.0e-154 550.1 278 100.0
MD05G1034600 Malus domestica HOM05D004425 ORTHO05D005783 6.2e-88 328.2 306 63.1
Prupe.8G042900 Prunus persica HOM05D004425 ORTHO05D005783 4.5e-86 322.0 306 60.5
RcHm_v2.0_Chr6g0274001 Rosa chinensis HOM05D004425 ORTHO05D005783 1.2e-75 287.3 307 57.7
FAN15G1954 Fragaria x ananassa HOM05D004425 ORTHO05D005783 3.3e-73 279.3 307 56.7
FAN20G2288 Fragaria x ananassa HOM05D004425 ORTHO05D005783 4.3e-73 278.9 307 56.4
FvH4_2g12900 Fragaria vesca HOM05D004425 ORTHO05D005783 7.4e-73 278.1 307 56.7
FAN24G2283 Fragaria x ananassa HOM05D004425 ORTHO05D005783 7.4e-73 278.1 307 56.7
Cfa018276 Carpinus fangiana HOM05D004425 ORTHO05D005783 1.4e-66 257.3 307 52.8
Atru.chr13.1991 Acer truncatum HOM05D004425 ORTHO05D005783 1.4e-63 247.3 307 51.8
Ciclev10000894m.g Citrus clementina HOM05D004425 ORTHO05D005783 2.0e-62 243.4 309 51.1
QL02p037179 Quercus lobata HOM05D004425 ORTHO05D005783 1.7e-61 240.4 291 52.9
Glyma.10G220900 Glycine max HOM05D004425 ORTHO05D005783 2.2e-61 240.0 304 49.3
Manes.02G184000 Manihot esculenta HOM05D004425 ORTHO05D005783 8.5e-61 238.0 307 50.5
CiPaw.15G011900 Carya illinoinensis HOM05D004425 ORTHO05D005783 1.9e-60 236.9 307 50.5
Haze_17811 Corylus avellana HOM05D004425 ORTHO05D005783 3.2e-60 236.1 367 44.1
TWI60G0965 Tripterygium wilfordii HOM05D004425 ORTHO05D005783 3.6e-59 232.6 307 47.9
Glyma.20G170600 Glycine max HOM05D004425 ORTHO05D005783 1.0e-58 231.1 308 49.4
Duzib093G0931 Durio zibethinus HOM05D004425 ORTHO05D005783 1.8e-58 230.3 292 49.3
GSVIVG01013706001 Vitis vinifera HOM05D004425 ORTHO05D005783 2.3e-58 229.9 307 49.8
DCAR_014325 Daucus carota HOM05D004425 ORTHO05D005783 3.9e-58 229.2 307 48.2
Hma1.2p1_0678F.1_g202100 Hydrangea macrophylla HOM05D004425 ORTHO05D005783 1.5e-57 227.3 306 48.7
Potri.005G197900 Populus trichocarpa HOM05D004425 ORTHO05D005783 1.5e-57 227.3 291 48.1
Potri.002G063400 Populus trichocarpa HOM05D004425 ORTHO05D005783 2.0e-57 226.9 308 47.7
TWI60G0364 Tripterygium wilfordii HOM05D004425 ORTHO05D005783 2.0e-57 226.9 307 46.3
MELO3C019971.2 Cucumis melo HOM05D004425 ORTHO05D005783 1.3e-56 224.2 307 47.9
Sed0020223 Sechium edule HOM05D004425 ORTHO05D005783 1.3e-56 224.2 307 47.9
VMungo0720G3015 Vigna mungo HOM05D004425 ORTHO05D005783 2.2e-56 223.4 290 49.3
Sabra05G0150700 Salix brachista HOM05D004425 ORTHO05D005783 3.7e-56 222.6 316 45.9
ClCG08G007280 Citrullus lanatus HOM05D004425 ORTHO05D005783 8.2e-56 221.5 306 47.1
Rhsim11G0088600 Rhododendron simsii HOM05D004425 ORTHO05D005783 1.1e-55 221.1 307 47.9
CSS0010963 Camellia sinensis var. sinensis HOM05D004425 ORTHO05D005783 1.8e-55 220.3 307 47.2
CsaV3_6G004950 Cucumis sativus L. HOM05D004425 ORTHO05D005783 4.1e-55 219.2 307 47.6
CSS0011525 Camellia sinensis var. sinensis HOM05D004425 ORTHO05D005783 5.3e-55 218.8 307 46.9
Thecc.08G161900 Theobroma cacao HOM05D004425 ORTHO05D005783 2.6e-54 216.5 316 46.2
Nn6g32191 Nelumbo nucifera HOM05D004425 ORTHO05D005783 3.5e-54 216.1 284 48.9
TAR628G0201 Trochodendron aralioides HOM05D004425 ORTHO05D005783 4.5e-54 215.7 307 47.2
PGR102G1394 Punica granatum HOM05D004425 ORTHO05D005783 1.3e-53 214.2 309 45.6
Gohir.D02G068000 Gossypium hirsutum HOM05D004425 ORTHO05D005783 1.7e-53 213.8 307 46.3
FAN27G1841 Fragaria x ananassa HOM05D004425 ORTHO05D005783 2.2e-53 213.4 292 49.7
Lalb_Chr06g0161781 Lupinus albus HOM05D004425 ORTHO05D005783 2.2e-53 213.4 290 48.3
Medtr1g097610 Medicago truncatula HOM05D004425 ORTHO05D005783 2.2e-53 213.4 307 47.6
COL.COLO4_13726 Corchorus olitorius HOM05D004425 ORTHO05D005783 2.9e-53 213.0 323 45.5
Gorai.005G076800 Gossypium raimondii HOM05D004425 ORTHO05D005783 6.5e-53 211.8 307 45.3
Sopen04g028080 Solanum pennellii HOM05D004425 ORTHO05D005783 8.5e-53 211.5 307 45.6
arahy.Tifrunner.gnm1.ann1.64NVCN Arachis hypogaea HOM05D004425 ORTHO05D005783 1.1e-52 211.1 287 48.1
arahy.Tifrunner.gnm1.ann1.J67SBC Arachis hypogaea HOM05D004425 ORTHO05D005783 1.1e-52 211.1 287 48.1
Eucgr.F02682 Eucalyptus grandis HOM05D004425 ORTHO05D005783 1.4e-52 210.7 308 46.4
Aqoxy5G02018 Aquilegia oxysepala HOM05D004425 ORTHO05D005783 1.9e-52 210.3 306 45.8
Gohir.A02G062300 Gossypium hirsutum HOM05D004425 ORTHO05D005783 2.5e-52 209.9 307 45.0
Sed0006049 Sechium edule HOM05D004425 ORTHO05D005783 3.2e-52 209.5 291 46.7
MSTRG.972 Avicennia marina HOM05D004425 ORTHO05D005783 5.5e-52 208.8 312 43.6
Solyc04g072036.1 Solanum lycopersicum HOM05D004425 ORTHO05D005783 9.4e-52 208.0 307 45.0
PGSC0003DMG400025077 Solanum tuberosum HOM05D004425 ORTHO05D005783 9.4e-52 208.0 307 44.6
Migut.C00150 Erythranthe guttata HOM05D004425 ORTHO05D005783 4.7e-51 205.7 284 45.8
Glyma.16G161600 Glycine max HOM05D004425 ORTHO05D005783 4.7e-51 205.7 307 45.6
AUR62007692 Chenopodium quinoa HOM05D004425 ORTHO05D005783 6.1e-51 205.3 293 46.1
Lj5g0021674 Lotus japonicus HOM05D004425 ORTHO05D005783 6.1e-51 205.3 309 46.9
Peaxi162Scf00360g00089 Petunia axillaris HOM05D004425 ORTHO05D005783 6.1e-51 205.3 307 44.6
MBI01_g29006_MAGBIO Magnolia biondii HOM05D004425 ORTHO05D005783 1.4e-50 204.1 307 44.6
Hund17360 Selenicereus undatus HOM05D004425 ORTHO05D005783 1.8e-50 203.8 307 45.6
Psat6g190160 Pisum sativum HOM05D004425 ORTHO05D005783 2.3e-50 203.4 308 44.8
AUR62007694 Chenopodium quinoa HOM05D004425 ORTHO05D005783 3.0e-50 203.0 293 45.7
TPR.G17013 Trifolium pratense HOM05D004425 ORTHO05D005783 3.9e-50 202.6 343 43.7
DCAR_001192 Daucus carota HOM05D004425 ORTHO05D005783 5.2e-50 202.2 318 43.1
Thhalv10018428m.g Eutrema salsugineum HOM05D004425 ORTHO05D005783 2.0e-49 200.3 305 44.3
Oeu046065.1 Olea europaea HOM05D004425 ORTHO05D005783 2.0e-49 200.3 283 46.3
PSO210G1911 Papaver somniferum HOM05D004425 ORTHO05D005783 2.0e-49 200.3 281 44.1
VMungo0464G1137 Vigna mungo HOM05D004425 ORTHO05D005783 2.0e-49 200.3 311 45.7
Cpa.g.sc26.112 Carica papaya HOM05D004425 ORTHO05D005783 2.6e-49 199.9 284 47.5
Nitab4.5_0003443g0070 Nicotiana tabacum HOM05D004425 ORTHO05D005783 2.6e-49 199.9 308 44.2
SalBow7G3651 Salvia bowleyana HOM05D004425 ORTHO05D005783 5.7e-49 198.7 287 44.3
AUR62013449 Chenopodium quinoa HOM05D004425 ORTHO05D005783 9.7e-49 198.0 293 44.4
PSO170G0918 Papaver somniferum HOM05D004425 ORTHO05D005783 9.7e-49 198.0 281 44.1
EL10Ac1g01372 Beta vulgaris HOM05D004425 ORTHO05D005783 1.7e-48 197.2 293 45.4
Lsat_1_v5_gn_9_42380 Lactuca sativa HOM05D004425 ORTHO05D005783 2.8e-48 196.4 283 46.6
Nitab4.5_0003178g0010 Nicotiana tabacum HOM05D004425 ORTHO05D005783 3.7e-48 196.1 308 43.5
HanXRQChr11g0320171 Helianthus annuus HOM05D004425 ORTHO05D005783 4.8e-48 195.7 284 45.4
Sc26g0002880 Simmondsia chinensis HOM05D004425 ORTHO05D005783 4.8e-48 195.7 303 43.6
Cc10_g06490 Coffea canephora HOM05D004425 ORTHO05D005783 8.2e-48 194.9 308 43.5
Ah.05g169010 Amaranthus hybridus HOM05D004425 ORTHO05D005783 2.4e-47 193.4 294 43.5
Oeu061448.2 Olea europaea HOM05D004425 ORTHO05D005783 2.4e-47 193.4 306 43.5
AL2G31290 Arabidopsis lyrata HOM05D004425 ORTHO05D005783 3.1e-47 193.0 299 43.8
Sp5g26750 Schrenkiella parvula HOM05D004425 ORTHO05D005783 4.1e-47 192.6 288 45.5
AT1G71720 Arabidopsis thaliana HOM05D004425 ORTHO05D005783 7.0e-47 191.8 298 44.0
Phvul.004G089600 Phaseolus vulgaris HOM05D004425 ORTHO05D005783 7.0e-47 191.8 308 43.8
Carub.0002s1848 Capsella rubella HOM05D004425 ORTHO05D005783 9.1e-47 191.4 304 44.4
Lalb_Chr19g0130031 Lupinus albus HOM05D004425 ORTHO05D005783 2.6e-46 189.9 287 44.9
CAN.G1183.17 Capsicum annuum HOM05D004425 ORTHO05D005783 4.5e-46 189.1 308 42.2
Migut.C00138 Erythranthe guttata HOM05D004425 ORTHO05D005783 7.7e-46 188.3 262 45.8
vmacro01503 Vaccinium macrocarpon HOM05D004425 ORTHO05D005783 1.3e-45 187.6 402 36.3
Ca_04667_v3 Cicer arietinum L. HOM05D004425 ORTHO05D005783 2.9e-45 186.4 309 43.4
CDE02G3532 Ceratophyllum demersum HOM05D004425 ORTHO05D005783 6.5e-45 185.3 298 43.0
Aa31LG4G8910 Aethionema arabicum HOM05D004425 ORTHO05D005783 1.6e-43 180.6 288 43.4
arahy.Tifrunner.gnm1.ann1.GMAE2R Arachis hypogaea HOM05D004425 ORTHO05D005783 6.1e-43 178.7 289 41.5
arahy.Tifrunner.gnm1.ann1.9T1T9I Arachis hypogaea HOM05D004425 ORTHO05D005783 8.0e-43 178.3 289 41.9
BcaC08g46598 Brassica carinata HOM05D004425 ORTHO05D005783 1.0e-42 177.9 306 42.2
A07p37870 Brassica napus HOM05D004425 ORTHO05D005783 1.0e-42 177.9 242 46.3
BraA07t31352Z Brassica rapa HOM05D004425 ORTHO05D005783 1.0e-42 177.9 242 46.3
Lalb_Chr01g0009831 Lupinus albus HOM05D004425 ORTHO05D005783 1.0e-42 177.9 302 43.0
C06p45770 Brassica napus HOM05D004425 ORTHO05D005783 1.4e-42 177.6 285 42.8
BolC6t39629H Brassica oleracea HOM05D004425 ORTHO05D005783 4.0e-42 176.0 285 42.8
Actinidia17768 Actinidia chinensis HOM05D004425 ORTHO05D005783 2.6e-41 173.3 282 44.0
Lj2g0007374 Lotus japonicus HOM05D004425 ORTHO05D005783 3.4e-41 172.9 270 43.7
THA.LOC104810492 Tarenaya hassleriana HOM05D004425 ORTHO05D005783 9.7e-41 171.4 288 42.0
Lj7A385T59 Lonicera japonica HOM05D004425 ORTHO05D005783 1.8e-39 167.2 276 43.1
Ca_10656_v3 Cicer arietinum L. HOM05D004425 ORTHO05D005783 9.1e-39 164.9 270 42.2
Phvul.007G084200 Phaseolus vulgaris HOM05D004425 ORTHO05D005783 4.5e-38 162.5 267 42.7
ATR0006G031 Amborella trichopoda HOM05D004425 ORTHO05D005783 9.4e-36 154.8 290 38.3
Zm00001eb294080 Zea mays HOM05D004425 ORTHO05D005783 2.2e-32 143.7 311 35.4
SGA_v2.0_scaffold133G34677 Striga asiatica HOM05D004425 ORTHO05D005783 9.1e-31 138.3 341 34.9
unitig_37.g13122 Utricularia gibba HOM05D004425 ORTHO05D005783 5.0e-29 132.5 283 36.7
Os05g0535800 Oryza sativa ssp. japonica HOM05D004425 ORTHO05D005783 1.9e-28 130.6 309 34.0
SEGI_21205 Sequoiadendron giganteum HOM05D004425 ORTHO05D005783 4.2e-28 129.4 240 36.2
HPP92_022945 Vanilla planifolia HOM05D004425 ORTHO05D005783 1.2e-25 121.3 229 40.6
Zm00001eb160710 Zea mays HOM05D004425 ORTHO05D005783 7.5e-25 118.6 225 39.1
ECA232G4000 Erigeron canadensis HOM05D004425 ORTHO05D005783 1.7e-24 117.5 107 57.0
Os01g0589000 Oryza sativa ssp. japonica HOM05D004425 ORTHO05D005783 1.1e-23 114.8 229 37.6
CARHR291070 Cardamine hirsuta HOM05D004425 ORTHO05D005783 5.9e-22 109.0 108 54.6
HPP92_022936 Vanilla planifolia HOM05D004425 ORTHO05D005783 1.0e-21 108.2 109 52.3
Mapoly0036s0031 Marchantia polymorpha HOM05D004425 ORTHO05D005783 1.8e-18 97.4 241 30.7
ECA232G4004 Erigeron canadensis HOM05D004425 ORTHO05D005783 3.4e-17 93.2 162 41.4
Actinidia15613 Actinidia chinensis HOM05D004425 ORTHO05D005783 7.5e-17 92.0 62 71.0
HPP92_022935 Vanilla planifolia HOM05D004425 ORTHO05D005783 9.2e-15 85.1 164 39.6
C03p12860 Brassica napus HOM05D004425 ORTHO05D005783 6.0e-14 82.4 113 46.0
SEGI_25822 Sequoiadendron giganteum HOM05D004425 ORTHO05D005783 1.0e-13 81.6 110 39.1
BcaB03g14063 Brassica carinata HOM05D004425 ORTHO05D005783 8.0e-11 72.0 121 42.1
BcaB07g33352 Brassica carinata HOM05D004425 ORTHO05D005783 1.4e-10 71.2 163 36.2
HPP92_022923 Vanilla planifolia HOM05D004425 ORTHO05D005783 6.8e-10 68.9 97 44.3
Pp3c14_19380 Physcomitrium patens HOM05D004425 ORTHO05D005783 1.5e-09 67.8 254 27.2
C03p88340 Brassica napus HOM05D004425 ORTHO05D005783 5.8e-09 65.9 180 33.9
MD10G1036900 Malus domestica HOM05D004425 ORTHO05D005783 2.2e-08 63.9 85 48.2
Pp3c18_13010 Physcomitrium patens HOM05D004425 ORTHO05D005783 2.4e-07 60.5 220 26.4
Pp3c19_21190 Physcomitrium patens HOM05D004425 ORTHO05D005783 2.1e-06 57.4 234 26.1
TPR.G31491 Trifolium pratense HOM05D004425 ORTHO05D005783 2.1e-06 57.4 84 48.8
BcaC05g26824 Brassica carinata HOM05D004425 ORTHO05D005783 4.6e-06 56.2 137 37.2
C05p26970 Brassica napus HOM05D004425 ORTHO05D005783 7.8e-06 55.5 100 42.0


User provided reference genes

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