Gene: Sopen04g028080

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen04g028080
  • Transcript Identifier Sopen04g028080.1
  • Gene Type Coding gene
  • Location Spenn-ch04 : 69612509-69618964 : positive

Gene Family Information

  • ID HOM05D004425
  • #Genes/#Species 162/92
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen04g028080.1

Descriptions

  • Description Nucleic acid-binding proteins superfamily | FUNCTIONS IN: RNA binding | LOCATED IN: chloroplast | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like , Nucleic acid-binding, OB-fold , Ribosomal protein S1, RNA-binding domain | BEST Arabidopsis thaliana protein match is: ribosomal protein S1
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010196
ISO
PLAZA Integrative Orthologynonphotochemical quenching AT1G71720
GO:0045727
ISO
PLAZA Integrative Orthologypositive regulation of translation AT1G71720
GO:0009416
ISO
PLAZA Integrative Orthologyresponse to light stimulus AT1G71720
GO:0043489
ISO
PLAZA Integrative OrthologyRNA stabilization AT1G71720
GO:0009657
ISO
PLAZA Integrative Orthologyplastid organization AT1G71720
GO:0032544
ISO
PLAZA Integrative Orthologyplastid translation AT1G71720

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G71720
GO:0034336
ISO
PLAZA Integrative Orthologymisfolded RNA binding AT1G71720
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT1G71720

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT1G71720
GO:0009536
ISO
PLAZA Integrative Orthologyplastid AT1G71720

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR022967 RNA-binding domain, S1
IPR012340 Nucleic acid-binding, OB-fold
IPR003029 S1 domain
Mapman id Description
16.11.5.1 RNA processing.organelle machinery.post-transcriptional gene expression regulation.plastidial mRNA chaperone (RLSB/BSF)