Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1036900 Malus domestica HOM05D004425 ORTHO05D005783 7.2e-53 210.3 106 100.0
TAR628G0201 Trochodendron aralioides HOM05D004425 ORTHO05D005783 7.3e-37 157.1 97 81.4
Nn6g32191 Nelumbo nucifera HOM05D004425 ORTHO05D005783 9.5e-37 156.8 97 81.4
FvH4_2g12900 Fragaria vesca HOM05D004425 ORTHO05D005783 2.1e-36 155.6 97 81.4
FAN24G2283 Fragaria x ananassa HOM05D004425 ORTHO05D005783 2.1e-36 155.6 97 81.4
RcHm_v2.0_Chr6g0274001 Rosa chinensis HOM05D004425 ORTHO05D005783 2.8e-36 155.2 97 80.4
Prupe.8G042900 Prunus persica HOM05D004425 ORTHO05D005783 3.6e-36 154.8 97 83.5
FAN15G1954 Fragaria x ananassa HOM05D004425 ORTHO05D005783 4.7e-36 154.5 97 80.4
FAN20G2288 Fragaria x ananassa HOM05D004425 ORTHO05D005783 4.7e-36 154.5 97 80.4
FAN27G1841 Fragaria x ananassa HOM05D004425 ORTHO05D005783 4.7e-36 154.5 97 80.4
Hma1.2p1_0678F.1_g202100 Hydrangea macrophylla HOM05D004425 ORTHO05D005783 6.1e-36 154.1 97 79.4
Lsat_1_v5_gn_9_42380 Lactuca sativa HOM05D004425 ORTHO05D005783 1.0e-35 153.3 97 80.4
Eucgr.F02682 Eucalyptus grandis HOM05D004425 ORTHO05D005783 1.4e-35 152.9 95 82.1
QL02p037179 Quercus lobata HOM05D004425 ORTHO05D005783 1.4e-35 152.9 97 81.4
Duzib093G0931 Durio zibethinus HOM05D004425 ORTHO05D005783 1.8e-35 152.5 97 81.4
MBI01_g29006_MAGBIO Magnolia biondii HOM05D004425 ORTHO05D005783 2.3e-35 152.1 97 78.4
arahy.Tifrunner.gnm1.ann1.64NVCN Arachis hypogaea HOM05D004425 ORTHO05D005783 3.0e-35 151.8 95 81.1
arahy.Tifrunner.gnm1.ann1.J67SBC Arachis hypogaea HOM05D004425 ORTHO05D005783 3.0e-35 151.8 95 81.1
MSTRG.972 Avicennia marina HOM05D004425 ORTHO05D005783 3.0e-35 151.8 97 77.3
Lalb_Chr06g0161781 Lupinus albus HOM05D004425 ORTHO05D005783 3.0e-35 151.8 97 79.4
Rhsim11G0088600 Rhododendron simsii HOM05D004425 ORTHO05D005783 3.0e-35 151.8 97 78.4
CiPaw.15G011900 Carya illinoinensis HOM05D004425 ORTHO05D005783 4.0e-35 151.4 90 85.6
COL.COLO4_13726 Corchorus olitorius HOM05D004425 ORTHO05D005783 4.0e-35 151.4 97 80.4
Aqoxy5G02018 Aquilegia oxysepala HOM05D004425 ORTHO05D005783 5.2e-35 151.0 97 78.4
Atru.chr13.1991 Acer truncatum HOM05D004425 ORTHO05D005783 6.8e-35 150.6 90 84.4
Glyma.20G170600 Glycine max HOM05D004425 ORTHO05D005783 6.8e-35 150.6 97 79.4
PGR102G1394 Punica granatum HOM05D004425 ORTHO05D005783 6.8e-35 150.6 90 84.4
Thecc.08G161900 Theobroma cacao HOM05D004425 ORTHO05D005783 6.8e-35 150.6 95 81.1
GSVIVG01013706001 Vitis vinifera HOM05D004425 ORTHO05D005783 6.8e-35 150.6 95 81.1
CSS0010963 Camellia sinensis var. sinensis HOM05D004425 ORTHO05D005783 8.9e-35 150.2 97 78.4
AUR62007692 Chenopodium quinoa HOM05D004425 ORTHO05D005783 8.9e-35 150.2 101 72.3
AUR62007694 Chenopodium quinoa HOM05D004425 ORTHO05D005783 8.9e-35 150.2 101 72.3
Manes.02G184000 Manihot esculenta HOM05D004425 ORTHO05D005783 8.9e-35 150.2 90 83.3
Actinidia17768 Actinidia chinensis HOM05D004425 ORTHO05D005783 1.2e-34 149.8 97 79.4
AUR62013449 Chenopodium quinoa HOM05D004425 ORTHO05D005783 1.2e-34 149.8 101 72.3
PSO170G0918 Papaver somniferum HOM05D004425 ORTHO05D005783 1.2e-34 149.8 90 82.2
PSO210G1911 Papaver somniferum HOM05D004425 ORTHO05D005783 1.2e-34 149.8 90 82.2
Peaxi162Scf00360g00089 Petunia axillaris HOM05D004425 ORTHO05D005783 1.2e-34 149.8 97 78.4
Ca_10656_v3 Cicer arietinum L. HOM05D004425 ORTHO05D005783 1.5e-34 149.4 97 76.3
Glyma.10G220900 Glycine max HOM05D004425 ORTHO05D005783 1.5e-34 149.4 97 78.4
HanXRQChr11g0320171 Helianthus annuus HOM05D004425 ORTHO05D005783 1.5e-34 149.4 97 77.3
Cfa018276 Carpinus fangiana HOM05D004425 ORTHO05D005783 2.0e-34 149.1 97 79.4
Ciclev10000894m.g Citrus clementina HOM05D004425 ORTHO05D005783 2.0e-34 149.1 90 84.4
Haze_17811 Corylus avellana HOM05D004425 ORTHO05D005783 2.0e-34 149.1 97 79.4
Sed0020223 Sechium edule HOM05D004425 ORTHO05D005783 2.0e-34 149.1 90 83.3
Sopen04g028080 Solanum pennellii HOM05D004425 ORTHO05D005783 2.0e-34 149.1 97 78.4
CSS0011525 Camellia sinensis var. sinensis HOM05D004425 ORTHO05D005783 2.6e-34 148.7 97 77.3
Lj5g0021674 Lotus japonicus HOM05D004425 ORTHO05D005783 4.4e-34 147.9 97 78.4
Hund17360 Selenicereus undatus HOM05D004425 ORTHO05D005783 4.4e-34 147.9 101 73.3
PGSC0003DMG400025077 Solanum tuberosum HOM05D004425 ORTHO05D005783 5.7e-34 147.5 97 76.3
ClCG08G007280 Citrullus lanatus HOM05D004425 ORTHO05D005783 7.5e-34 147.1 90 82.2
Migut.C00150 Erythranthe guttata HOM05D004425 ORTHO05D005783 7.5e-34 147.1 97 77.3
Medtr1g097610 Medicago truncatula HOM05D004425 ORTHO05D005783 7.5e-34 147.1 97 77.3
Nitab4.5_0003178g0010 Nicotiana tabacum HOM05D004425 ORTHO05D005783 7.5e-34 147.1 97 77.3
Cpa.g.sc26.112 Carica papaya HOM05D004425 ORTHO05D005783 9.8e-34 146.7 89 83.1
Potri.005G197900 Populus trichocarpa HOM05D004425 ORTHO05D005783 9.8e-34 146.7 97 78.4
Solyc04g072036.1 Solanum lycopersicum HOM05D004425 ORTHO05D005783 9.8e-34 146.7 97 77.3
Sc26g0002880 Simmondsia chinensis HOM05D004425 ORTHO05D005783 1.3e-33 146.4 97 76.3
Sabra05G0150700 Salix brachista HOM05D004425 ORTHO05D005783 1.7e-33 146.0 98 76.5
Sed0006049 Sechium edule HOM05D004425 ORTHO05D005783 1.7e-33 146.0 90 81.1
TWI60G0965 Tripterygium wilfordii HOM05D004425 ORTHO05D005783 1.7e-33 146.0 97 75.3
Nitab4.5_0003443g0070 Nicotiana tabacum HOM05D004425 ORTHO05D005783 2.2e-33 145.6 96 76.0
CAN.G1183.17 Capsicum annuum HOM05D004425 ORTHO05D005783 3.7e-33 144.8 97 75.3
CDE02G3532 Ceratophyllum demersum HOM05D004425 ORTHO05D005783 3.7e-33 144.8 96 78.1
Potri.002G063400 Populus trichocarpa HOM05D004425 ORTHO05D005783 3.7e-33 144.8 97 75.3
MELO3C019971.2 Cucumis melo HOM05D004425 ORTHO05D005783 6.4e-33 144.1 90 81.1
CsaV3_6G004950 Cucumis sativus L. HOM05D004425 ORTHO05D005783 6.4e-33 144.1 90 81.1
Carub.0002s1848 Capsella rubella HOM05D004425 ORTHO05D005783 8.3e-33 143.7 90 81.1
DCAR_014325 Daucus carota HOM05D004425 ORTHO05D005783 1.1e-32 143.3 97 73.2
Gohir.A02G062300 Gossypium hirsutum HOM05D004425 ORTHO05D005783 1.1e-32 143.3 94 78.7
Gohir.D02G068000 Gossypium hirsutum HOM05D004425 ORTHO05D005783 1.1e-32 143.3 94 78.7
Gorai.005G076800 Gossypium raimondii HOM05D004425 ORTHO05D005783 1.1e-32 143.3 94 78.7
EL10Ac1g01372 Beta vulgaris HOM05D004425 ORTHO05D005783 1.4e-32 142.9 96 76.0
Phvul.007G084200 Phaseolus vulgaris HOM05D004425 ORTHO05D005783 1.4e-32 142.9 97 74.2
VMungo0464G1137 Vigna mungo HOM05D004425 ORTHO05D005783 1.4e-32 142.9 98 73.5
THA.LOC104810492 Tarenaya hassleriana HOM05D004425 ORTHO05D005783 1.8e-32 142.5 93 77.4
AL2G31290 Arabidopsis lyrata HOM05D004425 ORTHO05D005783 2.4e-32 142.1 90 78.9
AT1G71720 Arabidopsis thaliana HOM05D004425 ORTHO05D005783 2.4e-32 142.1 90 80.0
Cc10_g06490 Coffea canephora HOM05D004425 ORTHO05D005783 2.4e-32 142.1 100 71.0
Thhalv10018428m.g Eutrema salsugineum HOM05D004425 ORTHO05D005783 3.2e-32 141.7 90 78.9
TPR.G17013 Trifolium pratense HOM05D004425 ORTHO05D005783 4.1e-32 141.4 97 74.2
VMungo0720G3015 Vigna mungo HOM05D004425 ORTHO05D005783 4.1e-32 141.4 97 74.2
SGA_v2.0_scaffold133G34677 Striga asiatica HOM05D004425 ORTHO05D005783 5.4e-32 141.0 96 72.9
ATR0006G031 Amborella trichopoda HOM05D004425 ORTHO05D005783 7.0e-32 140.6 90 76.7
SalBow7G3651 Salvia bowleyana HOM05D004425 ORTHO05D005783 7.0e-32 140.6 97 71.1
Aa31LG4G8910 Aethionema arabicum HOM05D004425 ORTHO05D005783 9.2e-32 140.2 90 77.8
BcaC08g46598 Brassica carinata HOM05D004425 ORTHO05D005783 1.2e-31 139.8 90 76.7
A07p37870 Brassica napus HOM05D004425 ORTHO05D005783 1.2e-31 139.8 90 76.7
BraA07t31352Z Brassica rapa HOM05D004425 ORTHO05D005783 1.2e-31 139.8 90 76.7
C06p45770 Brassica napus HOM05D004425 ORTHO05D005783 1.6e-31 139.4 90 76.7
Psat6g190160 Pisum sativum HOM05D004425 ORTHO05D005783 2.0e-31 139.0 97 73.2
Sp5g26750 Schrenkiella parvula HOM05D004425 ORTHO05D005783 2.0e-31 139.0 90 78.9
Lalb_Chr01g0009831 Lupinus albus HOM05D004425 ORTHO05D005783 2.7e-31 138.7 97 71.1
BolC6t39629H Brassica oleracea HOM05D004425 ORTHO05D005783 3.5e-31 138.3 90 75.6
Glyma.16G161600 Glycine max HOM05D004425 ORTHO05D005783 4.6e-31 137.9 97 72.2
Lalb_Chr19g0130031 Lupinus albus HOM05D004425 ORTHO05D005783 1.0e-30 136.7 97 72.2
Phvul.004G089600 Phaseolus vulgaris HOM05D004425 ORTHO05D005783 1.0e-30 136.7 97 69.1
TWI60G0364 Tripterygium wilfordii HOM05D004425 ORTHO05D005783 1.3e-30 136.3 90 74.4
Ca_04667_v3 Cicer arietinum L. HOM05D004425 ORTHO05D005783 1.7e-30 136.0 92 73.9
Ah.05g169010 Amaranthus hybridus HOM05D004425 ORTHO05D005783 2.3e-30 135.6 97 69.1
HPP92_022945 Vanilla planifolia HOM05D004425 ORTHO05D005783 5.0e-30 134.4 95 71.6
Lj2g0007374 Lotus japonicus HOM05D004425 ORTHO05D005783 1.5e-29 132.9 89 73.0
DCAR_001192 Daucus carota HOM05D004425 ORTHO05D005783 4.3e-29 131.3 90 72.2
arahy.Tifrunner.gnm1.ann1.9T1T9I Arachis hypogaea HOM05D004425 ORTHO05D005783 2.8e-28 128.6 90 73.3
MD05G1034600 Malus domestica HOM05D004425 ORTHO05D005783 2.8e-28 128.6 70 91.4
unitig_37.g13122 Utricularia gibba HOM05D004425 ORTHO05D005783 2.8e-28 128.6 97 67.0
arahy.Tifrunner.gnm1.ann1.GMAE2R Arachis hypogaea HOM05D004425 ORTHO05D005783 2.3e-27 125.6 90 72.2
Os01g0589000 Oryza sativa ssp. japonica HOM05D004425 ORTHO05D005783 2.0e-26 122.5 97 63.9
Zm00001eb160710 Zea mays HOM05D004425 ORTHO05D005783 3.4e-26 121.7 89 68.5
SEGI_21205 Sequoiadendron giganteum HOM05D004425 ORTHO05D005783 7.5e-26 120.6 96 66.7
vmacro01503 Vaccinium macrocarpon HOM05D004425 ORTHO05D005783 1.7e-25 119.4 145 50.3
Os05g0535800 Oryza sativa ssp. japonica HOM05D004425 ORTHO05D005783 2.9e-25 118.6 91 63.7
Zm00001eb294080 Zea mays HOM05D004425 ORTHO05D005783 6.4e-25 117.5 91 61.5
Lj7A385T59 Lonicera japonica HOM05D004425 ORTHO05D005783 9.2e-24 113.6 97 63.9
Oeu046065.1 Olea europaea HOM05D004425 ORTHO05D005783 1.3e-22 109.8 83 72.3
Migut.C00138 Erythranthe guttata HOM05D004425 ORTHO05D005783 9.5e-21 103.6 77 70.1
Mapoly0036s0031 Marchantia polymorpha HOM05D004425 ORTHO05D005783 2.1e-20 102.4 95 54.7
Oeu061448.2 Olea europaea HOM05D004425 ORTHO05D005783 1.8e-19 99.4 113 54.9
CARHR291070 Cardamine hirsuta HOM05D004425 ORTHO05D005783 1.7e-17 92.8 51 82.4
ECA232G4000 Erigeron canadensis HOM05D004425 ORTHO05D005783 1.7e-17 92.8 50 82.0
HPP92_022923 Vanilla planifolia HOM05D004425 ORTHO05D005783 1.9e-16 89.4 65 72.3
BcaB05g22179 Brassica carinata HOM05D004425 ORTHO05D005783 3.2e-16 88.6 88 54.5
C05p26970 Brassica napus HOM05D004425 ORTHO05D005783 3.2e-16 88.6 52 75.0
BolC5t31416H Brassica oleracea HOM05D004425 ORTHO05D005783 1.2e-15 86.7 52 73.1
BolC6t35755H Brassica oleracea HOM05D004425 ORTHO05D005783 2.7e-15 85.5 52 73.1
HPP92_022936 Vanilla planifolia HOM05D004425 ORTHO05D005783 1.3e-14 83.2 51 74.5
BcaC01g03158 Brassica carinata HOM05D004425 ORTHO05D005783 2.1e-12 75.9 75 56.0
Pp3c18_13010 Physcomitrium patens HOM05D004425 ORTHO05D005783 1.8e-11 72.8 82 48.8
Pp3c14_19380 Physcomitrium patens HOM05D004425 ORTHO05D005783 3.1e-11 72.0 82 51.2
Pp3c19_21190 Physcomitrium patens HOM05D004425 ORTHO05D005783 4.0e-11 71.6 75 48.0
BcaC05g26824 Brassica carinata HOM05D004425 ORTHO05D005783 8.9e-11 70.5 55 61.8
BcaB08g35329 Brassica carinata HOM05D004425 ORTHO05D005783 1.2e-10 70.1 87 47.1
SEGI_25822 Sequoiadendron giganteum HOM05D004425 ORTHO05D005783 1.2e-10 70.1 63 54.0
CBR_g39723 Chara braunii HOM05D004425 ORTHO05D005783 1.5e-10 69.7 93 39.8
BcaC05g28762 Brassica carinata HOM05D004425 ORTHO05D005783 1.7e-09 66.2 50 68.0
MD10G1037300 Malus domestica HOM05D004425 ORTHO05D005783 4.9e-09 64.7 85 48.2
BcaC03g15852 Brassica carinata HOM05D004425 ORTHO05D024261 1.4e-08 63.2 50 66.0
BcaB02g06626 Brassica carinata HOM05D004425 ORTHO05D005783 2.4e-08 62.4 82 48.8
BcaB07g33352 Brassica carinata HOM05D004425 ORTHO05D005783 2.1e-07 59.3 74 47.3
C03p88340 Brassica napus HOM05D004425 ORTHO05D005783 2.1e-07 59.3 41 73.2
ECA232G4004 Erigeron canadensis HOM05D004425 ORTHO05D005783 2.7e-07 58.9 46 69.6


User provided reference genes

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