Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1024600 Malus domestica HOM05D004026 ORTHO05D004712 3.2e-44 181.4 95 100.0
Prupe.3G148200 Prunus persica HOM05D004026 ORTHO05D004712 6.3e-32 140.6 80 92.5
Prupe.8G028400 Prunus persica HOM05D004026 ORTHO05D004712 5.3e-31 137.5 76 92.1
GSVIVG01034520001 Vitis vinifera HOM05D004026 ORTHO05D004712 7.0e-31 137.1 72 98.6
CDE06G1840 Ceratophyllum demersum HOM05D004026 ORTHO05D004712 9.1e-31 136.7 76 92.1
CDE08G0955 Ceratophyllum demersum HOM05D004026 ORTHO05D004712 9.1e-31 136.7 76 92.1
FvH4_2g13861 Fragaria vesca HOM05D004026 ORTHO05D004712 9.1e-31 136.7 71 100.0
FAN15G1801 Fragaria x ananassa HOM05D004026 ORTHO05D004712 9.1e-31 136.7 71 100.0
FAN20G2578 Fragaria x ananassa HOM05D004026 ORTHO05D004712 9.1e-31 136.7 71 100.0
FAN24G0951 Fragaria x ananassa HOM05D004026 ORTHO05D004712 9.1e-31 136.7 71 100.0
FAN27G2615 Fragaria x ananassa HOM05D004026 ORTHO05D004712 9.1e-31 136.7 71 100.0
MD10G1024500 Malus domestica HOM05D004026 ORTHO05D004712 9.1e-31 136.7 71 100.0
RcHm_v2.0_Chr6g0275571 Rosa chinensis HOM05D004026 ORTHO05D004712 9.1e-31 136.7 71 100.0
MD05G1024000 Malus domestica HOM05D004026 ORTHO05D004712 1.2e-30 136.3 71 98.6
Dinv25856 Davidia involucrata HOM05D004026 ORTHO05D004712 2.0e-30 135.6 81 88.9
Duzib093G0799 Durio zibethinus HOM05D004026 ORTHO05D004712 2.0e-30 135.6 71 98.6
Duzib116G0179 Durio zibethinus HOM05D004026 ORTHO05D004712 2.0e-30 135.6 71 98.6
ECA236G1806 Erigeron canadensis HOM05D004026 ORTHO05D004712 2.0e-30 135.6 71 98.6
HanXRQChr06g0182631 Helianthus annuus HOM05D004026 ORTHO05D004712 2.0e-30 135.6 71 98.6
HanXRQChr11g0339331 Helianthus annuus HOM05D004026 ORTHO05D004712 2.0e-30 135.6 71 98.6
Lsat_1_v5_gn_7_71840 Lactuca sativa HOM05D004026 ORTHO05D004712 2.0e-30 135.6 71 98.6
Manes.18G091400 Manihot esculenta HOM05D004026 ORTHO05D004712 2.0e-30 135.6 71 98.6
Potri.002G068800 Populus trichocarpa HOM05D004026 ORTHO05D004712 2.0e-30 135.6 71 98.6
Potri.005G191600 Populus trichocarpa HOM05D004026 ORTHO05D004712 2.0e-30 135.6 71 98.6
QL02p024017 Quercus lobata HOM05D004026 ORTHO05D004712 2.0e-30 135.6 71 98.6
Sabra02G0054100 Salix brachista HOM05D004026 ORTHO05D004712 2.0e-30 135.6 71 98.6
Sabra05G0146400 Salix brachista HOM05D004026 ORTHO05D004712 2.0e-30 135.6 71 98.6
TWI60G1706 Tripterygium wilfordii HOM05D004026 ORTHO05D004712 2.0e-30 135.6 71 98.6
Atru.chr13.2143 Acer truncatum HOM05D004026 ORTHO05D004712 2.6e-30 135.2 71 97.2
Ciclev10002950m.g Citrus clementina HOM05D004026 ORTHO05D004712 2.6e-30 135.2 71 97.2
Eucgr.F02710 Eucalyptus grandis HOM05D004026 ORTHO05D004712 2.6e-30 135.2 71 97.2
Gohir.A05G243000 Gossypium hirsutum HOM05D004026 ORTHO05D004712 2.6e-30 135.2 71 97.2
Gohir.D05G244500 Gossypium hirsutum HOM05D004026 ORTHO05D004712 2.6e-30 135.2 71 97.2
Gorai.009G253600 Gossypium raimondii HOM05D004026 ORTHO05D004712 2.6e-30 135.2 71 97.2
Manes.02G178900 Manihot esculenta HOM05D004026 ORTHO05D004712 2.6e-30 135.2 71 98.6
Nn1g06097 Nelumbo nucifera HOM05D004026 ORTHO05D004712 2.6e-30 135.2 71 97.2
PGR042G0059 Punica granatum HOM05D004026 ORTHO05D004712 2.6e-30 135.2 71 97.2
TAR381G0202 Trochodendron aralioides HOM05D004026 ORTHO05D004712 2.6e-30 135.2 71 97.2
TAR628G0743 Trochodendron aralioides HOM05D004026 ORTHO05D004712 2.6e-30 135.2 71 97.2
Cpa.g.sc2145.2 Carica papaya HOM05D004026 ORTHO05D004712 4.5e-30 134.4 71 97.2
CiPaw.16G013200 Carya illinoinensis HOM05D004026 ORTHO05D004712 4.5e-30 134.4 71 97.2
Haze_17748 Corylus avellana HOM05D004026 ORTHO05D004712 4.5e-30 134.4 71 97.2
Dinv41090 Davidia involucrata HOM05D004026 ORTHO05D004712 4.5e-30 134.4 71 97.2
Glyma.16G167900 Glycine max HOM05D004026 ORTHO05D004712 4.5e-30 134.4 71 97.2
Lj2g0026454 Lotus japonicus HOM05D004026 ORTHO05D004712 4.5e-30 134.4 71 97.2
QL09p017237 Quercus lobata HOM05D004026 ORTHO05D004712 4.5e-30 134.4 71 97.2
Hund26698 Selenicereus undatus HOM05D004026 ORTHO05D004712 4.5e-30 134.4 71 97.2
Thecc.08G150600 Theobroma cacao HOM05D004026 ORTHO05D004712 4.5e-30 134.4 71 97.2
Actinidia06668 Actinidia chinensis HOM05D004026 ORTHO05D004712 5.9e-30 134.0 71 97.2
CANSAT25G0019 Cannabis sativa HOM05D004026 ORTHO05D004712 5.9e-30 134.0 71 95.8
Nn5g28727 Nelumbo nucifera HOM05D004026 ORTHO05D004712 5.9e-30 134.0 71 95.8
Phvul.004G095700 Phaseolus vulgaris HOM05D004026 ORTHO05D004712 5.9e-30 134.0 71 95.8
Sed0019016 Sechium edule HOM05D004026 ORTHO05D004712 5.9e-30 134.0 81 87.7
TAR625G0830 Trochodendron aralioides HOM05D004026 ORTHO05D004712 5.9e-30 134.0 71 95.8
Aqoxy5G02098 Aquilegia oxysepala HOM05D004026 ORTHO05D004712 7.7e-30 133.7 76 89.5
Mapoly0008s0084 Marchantia polymorpha HOM05D004026 ORTHO05D004712 7.7e-30 133.7 71 94.4
TWI34G0684 Tripterygium wilfordii HOM05D004026 ORTHO05D004712 7.7e-30 133.7 71 97.2
AagrBONN_evm.TU.Sc2ySwM_117.2023 Anthoceros agrestis HOM05D004026 ORTHO05D004712 1.0e-29 133.3 71 95.8
ClCG08G006960 Citrullus lanatus HOM05D004026 ORTHO05D004712 1.0e-29 133.3 81 87.7
Gorai.002G055500 Gossypium raimondii HOM05D004026 ORTHO05D004712 1.0e-29 133.3 71 95.8
Hma1.2p1_0105F.1_g050760 Hydrangea macrophylla HOM05D004026 ORTHO05D004712 1.0e-29 133.3 71 97.2
Oeu046026.1 Olea europaea HOM05D004026 ORTHO05D004712 1.0e-29 133.3 71 97.2
Sed0010346 Sechium edule HOM05D004026 ORTHO05D004712 1.0e-29 133.3 81 87.7
SEGI_01220 Sequoiadendron giganteum HOM05D004026 ORTHO05D004712 1.0e-29 133.3 71 94.4
Glyma.02G082300 Glycine max HOM05D004026 ORTHO05D004712 1.3e-29 132.9 71 94.4
Rhsim06G0071000 Rhododendron simsii HOM05D004026 ORTHO05D004712 1.3e-29 132.9 71 95.8
Rhsim06G0135800 Rhododendron simsii HOM05D004026 ORTHO05D004712 1.3e-29 132.9 71 95.8
Rhsim10G0141800 Rhododendron simsii HOM05D004026 ORTHO05D004712 1.3e-29 132.9 71 95.8
THA.LOC104812039 Tarenaya hassleriana HOM05D004026 ORTHO05D004712 1.3e-29 132.9 71 94.4
THA.LOC104813712 Tarenaya hassleriana HOM05D004026 ORTHO05D004712 1.3e-29 132.9 71 94.4
unitig_744.g24567 Utricularia gibba HOM05D004026 ORTHO05D004712 1.3e-29 132.9 76 89.5
Ah.05g167900 Amaranthus hybridus HOM05D004026 ORTHO05D004712 1.7e-29 132.5 70 97.1
arahy.Tifrunner.gnm1.ann1.9PQ1GY Arachis hypogaea HOM05D004026 ORTHO05D004712 1.7e-29 132.5 70 97.1
arahy.Tifrunner.gnm1.ann1.XJQY2Y Arachis hypogaea HOM05D004026 ORTHO05D004712 1.7e-29 132.5 70 97.1
EL10Ac1g01537 Beta vulgaris HOM05D004026 ORTHO05D004712 1.7e-29 132.5 70 97.1
CAN.G249.12 Capsicum annuum HOM05D004026 ORTHO05D004712 1.7e-29 132.5 71 95.8
MBI09_g18621_MAGBIO Magnolia biondii HOM05D004026 ORTHO05D004712 1.7e-29 132.5 70 97.1
Phvul.004G129000 Phaseolus vulgaris HOM05D004026 ORTHO05D004712 1.7e-29 132.5 71 94.4
Solyc11g005370.2 Solanum lycopersicum HOM05D004026 ORTHO05D004712 1.7e-29 132.5 71 95.8
Sopen11g001380 Solanum pennellii HOM05D004026 ORTHO05D004712 1.7e-29 132.5 71 95.8
PGSC0003DMG400003988 Solanum tuberosum HOM05D004026 ORTHO05D004712 1.7e-29 132.5 71 95.8
Migut.N03226 Erythranthe guttata HOM05D004026 ORTHO05D004712 2.2e-29 132.1 71 95.8
Nitab4.5_0000964g0020 Nicotiana tabacum HOM05D004026 ORTHO05D004712 2.2e-29 132.1 71 94.4
TPR.G14063 Trifolium pratense HOM05D004026 ORTHO05D004712 2.2e-29 132.1 69 98.6
Dinv09936 Davidia involucrata HOM05D004026 ORTHO05D004712 2.9e-29 131.7 71 94.4
Migut.C01015 Erythranthe guttata HOM05D004026 ORTHO05D004712 2.9e-29 131.7 71 94.4
Gohir.A02G112705 Gossypium hirsutum HOM05D004026 ORTHO05D004712 2.9e-29 131.7 71 94.4
Gohir.D03G060607 Gossypium hirsutum HOM05D004026 ORTHO05D004712 3.8e-29 131.3 70 95.7
unitig_21.g20177 Utricularia gibba HOM05D004026 ORTHO05D004712 3.8e-29 131.3 76 88.2
HPP92_016150 Vanilla planifolia HOM05D004026 ORTHO05D004712 3.8e-29 131.3 71 93.0
CSS0019157 Camellia sinensis var. sinensis HOM05D004026 ORTHO05D004712 5.0e-29 131.0 71 94.4
Ca_28109_v3 Cicer arietinum L. HOM05D004026 ORTHO05D004712 5.0e-29 131.0 69 97.1
MELO3C008344.2 Cucumis melo HOM05D004026 ORTHO05D004712 5.0e-29 131.0 81 86.4
Lalb_Chr01g0009621 Lupinus albus HOM05D004026 ORTHO05D004712 5.0e-29 131.0 69 97.1
Medtr4g083170 Medicago truncatula HOM05D004026 ORTHO05D004712 5.0e-29 131.0 69 97.1
Pp3c24_12260 Physcomitrium patens HOM05D004026 ORTHO05D004712 5.0e-29 131.0 71 93.0
Psat7g153480 Pisum sativum HOM05D004026 ORTHO05D004712 5.0e-29 131.0 69 97.1
SalBow6G5104 Salvia bowleyana HOM05D004026 ORTHO05D004712 5.0e-29 131.0 71 94.4
AUR62013577 Chenopodium quinoa HOM05D004026 ORTHO05D004712 6.5e-29 130.6 70 94.3
Cc10_g14760 Coffea canephora HOM05D004026 ORTHO05D004712 6.5e-29 130.6 75 88.0
Lj1g0021939 Lotus japonicus HOM05D004026 ORTHO05D004712 6.5e-29 130.6 68 98.5
Nitab4.5_0000004g0160 Nicotiana tabacum HOM05D004026 ORTHO05D004712 6.5e-29 130.6 71 93.0
PSO541G1854 Papaver somniferum HOM05D004026 ORTHO05D004712 6.5e-29 130.6 69 95.7
PSO675G7538 Papaver somniferum HOM05D004026 ORTHO05D004712 6.5e-29 130.6 69 95.7
Zm00001eb146730 Zea mays HOM05D004026 ORTHO05D004712 1.1e-28 129.8 70 94.3
Lalb_Chr03g0035271 Lupinus albus HOM05D004026 ORTHO05D004712 1.5e-28 129.4 69 95.7
Peaxi162Scf00025g02218 Petunia axillaris HOM05D004026 ORTHO05D004712 1.5e-28 129.4 72 95.8
TPR.G8174 Trifolium pratense HOM05D004026 ORTHO05D004712 1.5e-28 129.4 69 95.7
Hma1.2p1_0006F.1_g004910 Hydrangea macrophylla HOM05D004026 ORTHO05D004712 1.9e-28 129.0 71 93.0
Thhalv10019321m.g Eutrema salsugineum HOM05D004026 ORTHO05D004712 2.5e-28 128.6 76 82.9
Peaxi162Scf00583g00530 Petunia axillaris HOM05D004026 ORTHO05D004712 3.2e-28 128.3 72 94.4
ATR0772G183 Amborella trichopoda HOM05D004026 ORTHO05D004712 5.5e-28 127.5 70 90.0
BcaB02g07078 Brassica carinata HOM05D004026 ORTHO05D004712 7.2e-28 127.1 76 81.6
BcaB05g25014 Brassica carinata HOM05D004026 ORTHO05D004712 7.2e-28 127.1 76 81.6
BcaC03g15707 Brassica carinata HOM05D004026 ORTHO05D004712 7.2e-28 127.1 76 81.6
BcaC08g45508 Brassica carinata HOM05D004026 ORTHO05D004712 7.2e-28 127.1 76 81.6
BcaC08g47186 Brassica carinata HOM05D004026 ORTHO05D004712 7.2e-28 127.1 76 81.6
A02p20950 Brassica napus HOM05D004026 ORTHO05D004712 7.2e-28 127.1 76 81.6
A07p28330 Brassica napus HOM05D004026 ORTHO05D004712 7.2e-28 127.1 76 81.6
A07p42450 Brassica napus HOM05D004026 ORTHO05D004712 7.2e-28 127.1 76 81.6
C02p34120 Brassica napus HOM05D004026 ORTHO05D004712 7.2e-28 127.1 76 81.6
C06p31770 Brassica napus HOM05D004026 ORTHO05D004712 7.2e-28 127.1 76 81.6
C06p51010 Brassica napus HOM05D004026 ORTHO05D004712 7.2e-28 127.1 76 81.6
BolC2t09428H Brassica oleracea HOM05D004026 ORTHO05D004712 7.2e-28 127.1 76 81.6
BolC6t38306H Brassica oleracea HOM05D004026 ORTHO05D004712 7.2e-28 127.1 76 81.6
BolC6t40126H Brassica oleracea HOM05D004026 ORTHO05D004712 7.2e-28 127.1 76 81.6
BraA02t07126Z Brassica rapa HOM05D004026 ORTHO05D004712 7.2e-28 127.1 76 81.6
BraA07t30470Z Brassica rapa HOM05D004026 ORTHO05D004712 7.2e-28 127.1 76 81.6
BraA07t31770Z Brassica rapa HOM05D004026 ORTHO05D004712 7.2e-28 127.1 76 81.6
SMO169G0100 Selaginella moellendorffii HOM05D004026 ORTHO05D004712 7.2e-28 127.1 71 88.7
Aa31LG4G6900 Aethionema arabicum HOM05D004026 ORTHO05D004712 1.6e-27 125.9 71 85.9
CARHR070370 Cardamine hirsuta HOM05D004026 ORTHO05D004712 2.1e-27 125.6 71 85.9
Sp5g31990 Schrenkiella parvula HOM05D004026 ORTHO05D004712 2.1e-27 125.6 71 85.9
AT1G76860 Arabidopsis thaliana HOM05D004026 ORTHO05D004712 2.7e-27 125.2 71 87.3
DCAR_014432 Daucus carota HOM05D004026 ORTHO05D004712 2.7e-27 125.2 66 97.0
Os01g0866700 Oryza sativa ssp. japonica HOM05D004026 ORTHO05D004712 2.7e-27 125.2 66 97.0
AL2G36980 Arabidopsis lyrata HOM05D004026 ORTHO05D004712 6.1e-27 124.0 71 85.9
Carub.0002s2374 Capsella rubella HOM05D004026 ORTHO05D004712 8.0e-27 123.6 71 84.5
Aa31LG7G5300 Aethionema arabicum HOM05D004026 ORTHO05D004712 1.0e-26 123.2 71 83.1
BcaB07g32108 Brassica carinata HOM05D004026 ORTHO05D004712 1.4e-26 122.9 81 76.5
A06p17220 Brassica napus HOM05D004026 ORTHO05D004712 1.4e-26 122.9 81 76.5
BraA06t24824Z Brassica rapa HOM05D004026 ORTHO05D004712 1.4e-26 122.9 81 76.5
AL1G34240 Arabidopsis lyrata HOM05D004026 ORTHO05D004712 1.8e-26 122.5 71 83.1
CARHR021640 Cardamine hirsuta HOM05D004026 ORTHO05D004712 1.8e-26 122.5 71 83.1
Sp1g18830 Schrenkiella parvula HOM05D004026 ORTHO05D004712 1.8e-26 122.5 71 83.1
AT1G21190 Arabidopsis thaliana HOM05D004026 ORTHO05D004712 2.3e-26 122.1 71 81.7
Carub.0001s2062 Capsella rubella HOM05D004026 ORTHO05D004712 2.3e-26 122.1 71 81.7
MCO12G407 Micromonas commoda HOM05D004026 ORTHO05D004712 2.0e-25 119.0 69 81.2
MSTRG.22373 Avicennia marina HOM05D004026 ORTHO05D004712 6.3e-24 114.0 69 81.2
BolC5t30689H Brassica oleracea HOM05D004026 ORTHO05D004712 6.3e-24 114.0 82 72.0
Cre16.g662300 Chlamydomonas reinhardtii HOM05D004026 ORTHO05D004712 6.3e-24 114.0 72 80.6
COL.COLO4_37834 Corchorus olitorius HOM05D004026 ORTHO05D004712 1.1e-23 113.2 73 86.3
C05p19920 Brassica napus HOM05D004026 ORTHO05D004712 4.1e-23 111.3 84 69.0
Glyma.10G120000 Glycine max HOM05D004026 ORTHO05D004712 1.6e-22 109.4 61 91.8
BcaC05g26025 Brassica carinata HOM05D004026 ORTHO05D004712 1.0e-21 106.7 82 68.3
PRCOL_00001118 Prasinoderma coloniale HOM05D004026 ORTHO05D004712 1.3e-21 106.3 71 73.2
vmacro12827 Vaccinium macrocarpon HOM05D004026 ORTHO05D004712 5.0e-21 104.4 138 49.3
SalBow4G0880 Salvia bowleyana HOM05D004026 ORTHO05D004712 5.5e-20 100.9 56 91.1
Cfa018326 Carpinus fangiana HOM05D004026 ORTHO05D004712 1.2e-19 99.8 108 58.3
CsaV3_1G019700 Cucumis sativus L. HOM05D004026 ORTHO05D004712 6.1e-19 97.4 109 58.7
Haze_27742 Corylus avellana HOM05D004026 ORTHO05D004712 4.0e-18 94.7 68 67.6
AUR62026713 Chenopodium quinoa HOM05D004026 ORTHO05D004712 5.2e-18 94.4 70 74.3
CsaV3_6G005290 Cucumis sativus L. HOM05D004026 ORTHO05D004712 9.1e-15 83.6 106 55.7
Cfa023910 Carpinus fangiana HOM05D004026 ORTHO05D004712 1.6e-11 72.8 62 53.2
CBR_g88561 Chara braunii HOM05D000019 ORTHO05D000002 4.7e-11 71.2 60 63.3
Sc02g0004120 Simmondsia chinensis HOM05D004026 ORTHO05D004712 2.0e-09 65.9 34 94.1
SHI20484 Sapria himalayana HOM05D004026 ORTHO05D004712 2.6e-09 65.5 37 81.1
Nitab4.5_0010284g0010 Nicotiana tabacum HOM05D004026 ORTHO05D004712 5.7e-09 64.3 32 96.9
Nitab4.5_0002064g0050 Nicotiana tabacum HOM05D004026 ORTHO05D004712 7.5e-09 63.9 32 93.8
Ciclev10003306m.g Citrus clementina HOM05D004026 ORTHO05D004712 7.8e-06 53.9 33 81.8


User provided reference genes

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