Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1046100 Malus domestica HOM05D004526 ORTHO05D005548 1.7e-90 335.9 158 100.0
MD09G1046200 Malus domestica HOM05D004526 ORTHO05D005548 4.4e-30 135.2 87 79.3
MD17G1047000 Malus domestica HOM05D004526 ORTHO05D005548 1.4e-28 130.2 89 73.0
Prupe.3G272100 Prunus persica HOM05D004526 ORTHO05D005548 6.6e-26 121.3 87 70.1
RcHm_v2.0_Chr2g0169161 Rosa chinensis HOM05D004526 ORTHO05D005548 4.7e-24 115.2 84 70.2
Phvul.007G007300 Phaseolus vulgaris HOM05D004526 ORTHO05D005548 3.1e-23 112.5 98 63.3
ClCG09G018400 Citrullus lanatus HOM05D004526 ORTHO05D005548 4.0e-23 112.1 80 71.2
MELO3C021974.2 Cucumis melo HOM05D004526 ORTHO05D005548 4.0e-23 112.1 80 71.2
CsaV3_5G037880 Cucumis sativus L. HOM05D004526 ORTHO05D005548 4.0e-23 112.1 80 71.2
Sed0004091 Sechium edule HOM05D004526 ORTHO05D005548 4.0e-23 112.1 80 71.2
FAN09G4881 Fragaria x ananassa HOM05D004526 ORTHO05D005548 8.9e-23 110.9 84 67.9
FAN14G2223 Fragaria x ananassa HOM05D004526 ORTHO05D005548 8.9e-23 110.9 84 67.9
FAN02G4162 Fragaria x ananassa HOM05D004526 ORTHO05D005548 1.2e-22 110.5 84 67.9
FvH4_6g49260 Fragaria vesca HOM05D004526 ORTHO05D005548 1.5e-22 110.2 83 67.5
FAN05G4948 Fragaria x ananassa HOM05D004526 ORTHO05D005548 1.5e-22 110.2 84 66.7
Glyma.10G292700 Glycine max HOM05D004526 ORTHO05D005548 1.5e-22 110.2 92 63.0
Glyma.20G242900 Glycine max HOM05D004526 ORTHO05D005548 2.6e-22 109.4 98 61.2
VMungo0720G0008 Vigna mungo HOM05D004526 ORTHO05D005548 3.4e-22 109.0 98 61.2
Lj5g0010112 Lotus japonicus HOM05D004526 ORTHO05D004861 4.4e-22 108.6 103 57.3
Eucgr.I01917 Eucalyptus grandis HOM05D004526 ORTHO05D005548 5.8e-22 108.2 96 58.3
TAR622G0275 Trochodendron aralioides HOM05D004526 ORTHO05D005548 5.8e-22 108.2 81 67.9
Manes.17G021000 Manihot esculenta HOM05D004526 ORTHO05D005548 7.5e-22 107.8 80 67.5
PSO017G3834 Papaver somniferum HOM05D004526 ORTHO05D005548 7.5e-22 107.8 80 66.2
Potri.017G077200 Populus trichocarpa HOM05D004526 ORTHO05D005548 7.5e-22 107.8 92 62.0
Thecc.04G074400 Theobroma cacao HOM05D004526 ORTHO05D005548 7.5e-22 107.8 80 67.5
MSTRG.1703 Avicennia marina HOM05D004526 ORTHO05D005548 9.8e-22 107.5 80 66.2
Actinidia06070 Actinidia chinensis HOM05D004526 ORTHO05D005548 1.3e-21 107.1 89 64.0
Ca_11340_v3 Cicer arietinum L. HOM05D004526 ORTHO05D005548 1.3e-21 107.1 99 57.6
MD09G1046500 Malus domestica HOM05D004526 ORTHO05D005548 1.3e-21 107.1 86 67.4
arahy.Tifrunner.gnm1.ann1.S1RF4U Arachis hypogaea HOM05D004526 ORTHO05D005548 2.2e-21 106.3 93 61.3
Gohir.D04G050600 Gossypium hirsutum HOM05D004526 ORTHO05D005548 2.2e-21 106.3 80 66.2
Gorai.012G056100 Gossypium raimondii HOM05D004526 ORTHO05D005548 2.2e-21 106.3 80 66.2
TAR481G0009 Trochodendron aralioides HOM05D004526 ORTHO05D005548 2.2e-21 106.3 82 64.6
CiPaw.04G020200 Carya illinoinensis HOM05D004526 ORTHO05D005548 2.9e-21 105.9 80 66.2
Sabra17G0069000 Salix brachista HOM05D004526 ORTHO05D005548 2.9e-21 105.9 92 62.0
Cfa007509 Carpinus fangiana HOM05D004526 ORTHO05D005548 3.7e-21 105.5 80 67.5
Haze_14584 Corylus avellana HOM05D004526 ORTHO05D005548 3.7e-21 105.5 80 67.5
Dinv06512 Davidia involucrata HOM05D004526 ORTHO05D005548 3.7e-21 105.5 80 66.2
Nitab4.5_0000157g0090 Nicotiana tabacum HOM05D004526 ORTHO05D005548 4.9e-21 105.1 80 65.0
COL.COLO4_25181 Corchorus olitorius HOM05D004526 ORTHO05D005548 6.4e-21 104.8 86 64.0
Nn3g17130 Nelumbo nucifera HOM05D004526 ORTHO05D005548 6.4e-21 104.8 80 65.0
Nn4g23045 Nelumbo nucifera HOM05D004526 ORTHO05D005548 6.4e-21 104.8 80 66.2
PSO478G0915 Papaver somniferum HOM05D004526 ORTHO05D005548 6.4e-21 104.8 80 65.0
unitig_578.g15969 Utricularia gibba HOM05D004526 ORTHO05D005548 6.4e-21 104.8 85 64.7
arahy.Tifrunner.gnm1.ann1.31SG4H Arachis hypogaea HOM05D004526 ORTHO05D005548 8.3e-21 104.4 93 61.3
CSS0019571 Camellia sinensis var. sinensis HOM05D004526 ORTHO05D005548 8.3e-21 104.4 89 61.8
Cpa.g.sc14.41 Carica papaya HOM05D004526 ORTHO05D005548 8.3e-21 104.4 98 57.1
Nitab4.5_0001504g0050 Nicotiana tabacum HOM05D004526 ORTHO05D005548 8.3e-21 104.4 80 65.0
CiPaw.03G030200 Carya illinoinensis HOM05D004526 ORTHO05D005548 1.1e-20 104.0 86 65.1
Peaxi162Scf00345g00811 Petunia axillaris HOM05D004526 ORTHO05D005548 1.1e-20 104.0 91 61.5
Psat6g239400 Pisum sativum HOM05D004526 ORTHO05D005548 1.1e-20 104.0 100 57.0
PGR142G4111 Punica granatum HOM05D004526 ORTHO05D005548 1.1e-20 104.0 80 65.0
Dinv07025 Davidia involucrata HOM05D004526 ORTHO05D005548 1.4e-20 103.6 89 62.9
Duzib147G0459 Durio zibethinus HOM05D004526 ORTHO05D005548 1.4e-20 103.6 80 65.0
Atru.chr8.1914 Acer truncatum HOM05D004526 ORTHO05D005548 1.9e-20 103.2 101 56.4
RhsimUnG0055200 Rhododendron simsii HOM05D004526 ORTHO05D005548 1.9e-20 103.2 89 59.6
HPP92_012836 Vanilla planifolia HOM05D004526 ORTHO05D005548 1.9e-20 103.2 87 63.2
arahy.Tifrunner.gnm1.ann1.PC3EEW Arachis hypogaea HOM05D004526 ORTHO05D005548 2.4e-20 102.8 93 60.2
DCAR_021672 Daucus carota HOM05D004526 ORTHO05D005548 2.4e-20 102.8 88 58.0
Gohir.A05G364100 Gossypium hirsutum HOM05D004526 ORTHO05D005548 2.4e-20 102.8 80 65.0
vmacro05738 Vaccinium macrocarpon HOM05D004526 ORTHO05D005548 2.4e-20 102.8 88 61.4
Lalb_Chr21g0307111 Lupinus albus HOM05D004526 ORTHO05D005548 3.2e-20 102.4 81 63.0
THA.LOC104811064 Tarenaya hassleriana HOM05D004526 ORTHO05D005548 3.2e-20 102.4 80 63.8
Cc08_g10980 Coffea canephora HOM05D004526 ORTHO05D005548 5.4e-20 101.7 89 61.8
GSVIVG01032607001 Vitis vinifera HOM05D004526 ORTHO05D005548 5.4e-20 101.7 87 58.6
arahy.Tifrunner.gnm1.ann1.C6A6VI Arachis hypogaea HOM05D004526 ORTHO05D005548 7.0e-20 101.3 93 59.1
Lj7A401T78 Lonicera japonica HOM05D004526 ORTHO05D005548 7.0e-20 101.3 89 58.4
Hund13244 Selenicereus undatus HOM05D004526 ORTHO05D005548 7.0e-20 101.3 81 63.0
CDE04G0248 Ceratophyllum demersum HOM05D004526 ORTHO05D005548 9.2e-20 100.9 87 59.8
Solyc01g009290.4 Solanum lycopersicum HOM05D004526 ORTHO05D005548 1.2e-19 100.5 80 61.2
Sopen01g004780 Solanum pennellii HOM05D004526 ORTHO05D005548 1.2e-19 100.5 80 61.2
PGSC0003DMG400030284 Solanum tuberosum HOM05D004526 ORTHO05D005548 1.2e-19 100.5 80 61.2
CAN.G226.26 Capsicum annuum HOM05D004526 ORTHO05D005548 1.6e-19 100.1 80 62.5
TWI60G0005 Tripterygium wilfordii HOM05D004526 ORTHO05D005548 1.6e-19 100.1 81 63.0
Migut.E01591 Erythranthe guttata HOM05D004526 ORTHO05D005548 2.0e-19 99.8 80 60.0
ATR0051G026 Amborella trichopoda HOM05D004526 ORTHO05D005548 3.5e-19 99.0 82 62.2
Thhalv10020725m.g Eutrema salsugineum HOM05D004526 ORTHO05D005548 3.5e-19 99.0 83 62.7
PGR142G2860 Punica granatum HOM05D004526 ORTHO05D005548 3.5e-19 99.0 80 61.2
EL10Ac2g02933 Beta vulgaris HOM05D004526 ORTHO05D005548 4.6e-19 98.6 81 60.5
Sp3g03530 Schrenkiella parvula HOM05D004526 ORTHO05D005548 4.6e-19 98.6 80 63.8
BcaB04g19307 Brassica carinata HOM05D004526 ORTHO05D005548 6.0e-19 98.2 80 65.0
BcaC01g04355 Brassica carinata HOM05D004526 ORTHO05D005548 6.0e-19 98.2 80 65.0
A03p33780 Brassica napus HOM05D004526 ORTHO05D005548 6.0e-19 98.2 80 65.0
C03p41080 Brassica napus HOM05D004526 ORTHO05D005548 6.0e-19 98.2 80 65.0
BolC3t16397H Brassica oleracea HOM05D004526 ORTHO05D005548 6.0e-19 98.2 80 65.0
BraA03t12552Z Brassica rapa HOM05D004526 ORTHO05D005548 6.0e-19 98.2 80 65.0
CARHR078910 Cardamine hirsuta HOM05D004526 ORTHO05D005548 7.8e-19 97.8 80 63.8
PSO591G0197 Papaver somniferum HOM05D004526 ORTHO05D005548 7.8e-19 97.8 79 63.3
PSO832G1140 Papaver somniferum HOM05D004526 ORTHO05D005548 7.8e-19 97.8 79 63.3
QL02p080561 Quercus lobata HOM05D004526 ORTHO05D005548 7.8e-19 97.8 80 63.8
Carub.0003s0384 Capsella rubella HOM05D004526 ORTHO05D005548 1.0e-18 97.4 83 61.4
Sc11g0006930 Simmondsia chinensis HOM05D004526 ORTHO05D005548 1.0e-18 97.4 81 61.7
Aqoxy3G03268 Aquilegia oxysepala HOM05D004526 ORTHO05D005548 1.3e-18 97.1 79 64.6
Oeu018626.2 Olea europaea HOM05D004526 ORTHO05D005548 1.7e-18 96.7 80 58.8
TAR305G0002 Trochodendron aralioides HOM05D004526 ORTHO05D005548 1.7e-18 96.7 78 59.0
Aa31LG5G15080 Aethionema arabicum HOM05D004526 ORTHO05D005548 2.3e-18 96.3 88 59.1
AL3G14740 Arabidopsis lyrata HOM05D004526 ORTHO05D005548 2.3e-18 96.3 80 61.2
AT3G04680 Arabidopsis thaliana HOM05D004526 ORTHO05D005548 3.9e-18 95.5 80 61.2
Lsat_1_v5_gn_4_176840 Lactuca sativa HOM05D004526 ORTHO05D005548 3.9e-18 95.5 100 50.0
SalBow1G4721 Salvia bowleyana HOM05D004526 ORTHO05D005548 6.6e-18 94.7 79 62.0
Medtr1g116060 Medicago truncatula HOM05D004526 ORTHO05D005548 1.9e-17 93.2 99 55.6
AagrBONN_evm.TU.Sc2ySwM_344.3939 Anthoceros agrestis HOM05D004526 ORTHO05D005548 3.3e-17 92.4 81 56.8
Ciclev10011737m.g Citrus clementina HOM05D004526 ORTHO05D005548 3.3e-17 92.4 102 52.9
HanXRQChr09g0265571 Helianthus annuus HOM05D004526 ORTHO05D005548 4.3e-17 92.0 98 51.0
SHI08813 Sapria himalayana HOM05D004526 ORTHO05D005548 4.3e-17 92.0 87 51.7
HanXRQChr12g0357441 Helianthus annuus HOM05D004526 ORTHO05D005548 7.3e-17 91.3 92 53.3
Os02g0217500 Oryza sativa ssp. japonica HOM05D004526 ORTHO05D005548 2.1e-16 89.7 90 51.1
Mapoly0016s0080 Marchantia polymorpha HOM05D004526 ORTHO05D005548 3.6e-16 89.0 81 54.3
Zm00001eb205260 Zea mays HOM05D004526 ORTHO05D005548 3.6e-16 89.0 80 55.0
SMO165G0052 Selaginella moellendorffii HOM05D004526 ORTHO05D005548 4.7e-16 88.6 88 51.1
Sp1g35350 Schrenkiella parvula HOM05D004526 ORTHO05D005548 6.2e-16 88.2 81 55.6
HPP92_009728 Vanilla planifolia HOM05D004526 ORTHO05D005548 8.1e-16 87.8 81 54.3
SEGI_10762 Sequoiadendron giganteum HOM05D004526 ORTHO05D005548 6.8e-15 84.7 77 55.8
CSS0008092 Camellia sinensis var. sinensis HOM05D004526 ORTHO05D005548 4.4e-14 82.0 67 62.7
CSS0012548 Camellia sinensis var. sinensis HOM05D004526 ORTHO05D005548 1.7e-13 80.1 67 61.2
Thhalv10028283m.g Eutrema salsugineum HOM05D004526 ORTHO05D005548 2.9e-13 79.3 85 48.2
AT5G39930 Arabidopsis thaliana HOM05D004526 ORTHO05D005548 3.7e-13 79.0 75 52.0
Actinidia27487 Actinidia chinensis HOM05D004526 ORTHO05D005548 4.9e-13 78.6 68 60.3
arahy.Tifrunner.gnm1.ann1.TUDV7U Arachis hypogaea HOM05D004526 ORTHO05D005548 4.9e-13 78.6 90 51.1
BcaC02g08842 Brassica carinata HOM05D004526 ORTHO05D005548 6.4e-13 78.2 74 52.7
C04p49900 Brassica napus HOM05D004526 ORTHO05D005548 6.4e-13 78.2 74 52.7
AL7G50210 Arabidopsis lyrata HOM05D004526 ORTHO05D005548 4.1e-12 75.5 75 50.7
ECA232G3358 Erigeron canadensis HOM05D004526 ORTHO05D005548 5.4e-12 75.1 80 47.5
CARHR262250 Cardamine hirsuta HOM05D004526 ORTHO05D005548 7.1e-12 74.7 74 47.3
TPR.G73 Trifolium pratense HOM05D004526 ORTHO05D005548 1.6e-11 73.6 43 74.4
BcaB06g27742 Brassica carinata HOM05D004526 ORTHO05D005548 2.1e-11 73.2 79 45.6
A04p15620 Brassica napus HOM05D004526 ORTHO05D005548 3.5e-11 72.4 74 50.0
BraA04t17197Z Brassica rapa HOM05D004526 ORTHO05D005548 3.5e-11 72.4 74 50.0
BolC4t26581H Brassica oleracea HOM05D004526 ORTHO05D005548 6.0e-11 71.6 70 51.4
CBR_g42172 Chara braunii HOM05D004526 ORTHO05D005548 1.0e-10 70.9 110 40.9
Carub.0007s3580 Capsella rubella HOM05D004526 ORTHO05D005548 3.0e-10 69.3 74 52.7
Actinidia23573 Actinidia chinensis HOM05D004526 ORTHO05D005548 2.5e-09 66.2 43 67.4
MCO09G184 Micromonas commoda HOM05D004526 ORTHO05D005548 2.8e-08 62.8 114 36.8
Sp7g01800 Schrenkiella parvula HOM05D004526 ORTHO05D005548 2.3e-07 59.7 51 52.9
SpUn0485_0020 Schrenkiella parvula HOM05D004526 ORTHO05D005548 4.0e-07 58.9 51 51.0
PRCOL_00003252 Prasinoderma coloniale HOM05D004526 ORTHO05D005548 8.9e-07 57.8 89 38.2
arahy.Tifrunner.gnm1.ann1.HJC8LN Arachis hypogaea HOM05D004526 ORTHO05D005548 7.6e-06 54.7 88 40.9


User provided reference genes

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