Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1260200 Malus domestica HOM05D000032 ORTHO05D021207 5.5e-30 134.0 89 100.0
MD01G1187800 Malus domestica HOM05D000032 ORTHO05D004313 1.1e-14 83.2 40 100.0
MD07G1259900 Malus domestica HOM05D000032 ORTHO05D004313 1.1e-14 83.2 40 100.0
CiPaw.03G098400 Carya illinoinensis HOM05D000032 ORTHO05D004313 2.8e-13 78.6 40 95.0
Cfa008242 Carpinus fangiana HOM05D001120 ORTHO05D004313 6.1e-13 77.4 40 92.5
Haze_13810 Corylus avellana HOM05D000032 ORTHO05D004313 6.1e-13 77.4 40 92.5
CiPaw.04G064100 Carya illinoinensis HOM05D000032 ORTHO05D004313 8.0e-13 77.0 40 90.0
SHI13814 Sapria himalayana HOM05D000032 ORTHO05D004313 8.0e-13 77.0 41 90.2
DCAR_020212 Daucus carota HOM05D000032 ORTHO05D004313 1.0e-12 76.6 40 90.0
PGR142G1914 Punica granatum HOM05D000032 ORTHO05D004313 1.0e-12 76.6 40 92.5
arahy.Tifrunner.gnm1.ann1.C0EFXX Arachis hypogaea HOM05D000032 ORTHO05D004313 1.4e-12 76.3 40 92.5
arahy.Tifrunner.gnm1.ann1.YYW2BF Arachis hypogaea HOM05D000032 ORTHO05D004313 1.4e-12 76.3 40 92.5
Glyma.10G241900 Glycine max HOM05D000032 ORTHO05D004313 1.4e-12 76.3 40 90.0
Glyma.20G152200 Glycine max HOM05D000032 ORTHO05D004313 1.4e-12 76.3 40 90.0
QL12p039208 Quercus lobata HOM05D000032 ORTHO05D004313 1.4e-12 76.3 40 90.0
TPR.G24657 Trifolium pratense HOM05D000032 ORTHO05D004313 3.0e-12 75.1 40 87.5
Psat6g203760 Pisum sativum HOM05D000032 ORTHO05D004313 4.0e-12 74.7 40 90.0
RcHm_v2.0_Chr1g0375371 Rosa chinensis HOM05D000032 ORTHO05D004313 4.0e-12 74.7 40 90.0
FvH4_7g28410 Fragaria vesca HOM05D000032 ORTHO05D004313 5.2e-12 74.3 40 90.0
FAN01G2995 Fragaria x ananassa HOM05D000032 ORTHO05D004313 5.2e-12 74.3 40 90.0
FAN06G1059 Fragaria x ananassa HOM05D000032 ORTHO05D004313 5.2e-12 74.3 40 90.0
FAN06G1914 Fragaria x ananassa HOM05D000032 ORTHO05D004313 5.2e-12 74.3 40 90.0
Prupe.2G284200 Prunus persica HOM05D000032 ORTHO05D004313 5.2e-12 74.3 40 90.0
Lj2g0011704 Lotus japonicus HOM05D000032 ORTHO05D004313 6.8e-12 73.9 40 87.5
Phvul.007G063700 Phaseolus vulgaris HOM05D000032 ORTHO05D004313 6.8e-12 73.9 40 87.5
VMungo0720G2533 Vigna mungo HOM05D000032 ORTHO05D004313 6.8e-12 73.9 40 87.5
FAN10G1730 Fragaria x ananassa HOM05D000032 ORTHO05D004313 8.9e-12 73.6 40 87.5
Cpa.g.sc3.253 Carica papaya HOM05D000032 ORTHO05D004313 1.2e-11 73.2 40 87.5
ClCG01G005260 Citrullus lanatus HOM05D000032 ORTHO05D004313 1.2e-11 73.2 40 85.0
MELO3C005400.2 Cucumis melo HOM05D000032 ORTHO05D004313 1.2e-11 73.2 40 85.0
Oeu030163.1 Olea europaea HOM05D000032 ORTHO05D004313 1.2e-11 73.2 40 87.5
TAR374G0375 Trochodendron aralioides HOM05D000032 ORTHO05D004313 1.2e-11 73.2 40 87.5
CANSAT21G1573 Cannabis sativa HOM05D000032 ORTHO05D004313 1.5e-11 72.8 40 82.5
Medtr6g056080 Medicago truncatula HOM05D000032 ORTHO05D004313 1.5e-11 72.8 40 87.5
Oeu039220.1 Olea europaea HOM05D000032 ORTHO05D004313 1.5e-11 72.8 40 87.5
Actinidia13528 Actinidia chinensis HOM05D000032 ORTHO05D004313 2.0e-11 72.4 40 87.5
COL.COLO4_14203 Corchorus olitorius HOM05D001120 ORTHO05D004313 2.0e-11 72.4 40 87.5
Dinv28522 Davidia involucrata HOM05D000032 ORTHO05D004313 2.0e-11 72.4 40 87.5
Medtr1g102410 Medicago truncatula HOM05D000032 ORTHO05D004313 2.0e-11 72.4 40 87.5
Psat0s3731g0160 Pisum sativum HOM05D000032 ORTHO05D004313 2.0e-11 72.4 40 85.0
SalBow4G2661 Salvia bowleyana HOM05D000032 ORTHO05D004313 2.0e-11 72.4 40 87.5
Ca_10831_v3 Cicer arietinum L. HOM05D000032 ORTHO05D004313 2.6e-11 72.0 40 85.0
Ciclev10004459m.g Citrus clementina HOM05D000032 ORTHO05D004313 2.6e-11 72.0 40 85.0
Dinv08002 Davidia involucrata HOM05D000032 ORTHO05D004313 2.6e-11 72.0 40 87.5
Duzib084G0726 Durio zibethinus HOM05D000032 ORTHO05D004313 2.6e-11 72.0 40 85.0
Thhalv10003756m.g Eutrema salsugineum HOM05D000032 ORTHO05D004313 2.6e-11 72.0 40 82.5
TAR629G0515 Trochodendron aralioides HOM05D000032 ORTHO05D004313 2.6e-11 72.0 40 85.0
BcaC04g23425 Brassica carinata HOM05D000032 ORTHO05D004313 3.4e-11 71.6 40 82.5
A09p07560 Brassica napus HOM05D000032 ORTHO05D004313 3.4e-11 71.6 40 82.5
C09p08450 Brassica napus HOM05D000032 ORTHO05D004313 3.4e-11 71.6 40 82.5
BolC9t53755H Brassica oleracea HOM05D000032 ORTHO05D004313 3.4e-11 71.6 40 82.5
BraA09t36410Z Brassica rapa HOM05D000032 ORTHO05D004313 3.4e-11 71.6 40 82.5
Duzib205G1326 Durio zibethinus HOM05D000032 ORTHO05D004313 3.4e-11 71.6 40 85.0
Gohir.A11G008600 Gossypium hirsutum HOM05D000032 ORTHO05D004313 3.4e-11 71.6 40 85.0
Gohir.D11G007900 Gossypium hirsutum HOM05D000032 ORTHO05D004313 3.4e-11 71.6 40 85.0
Gorai.007G009400 Gossypium raimondii HOM05D000032 ORTHO05D004313 3.4e-11 71.6 40 85.0
Atru.chr1.608 Acer truncatum HOM05D000032 ORTHO05D004313 4.4e-11 71.2 40 85.0
Atru.chr11.44 Acer truncatum HOM05D000032 ORTHO05D004313 4.4e-11 71.2 40 85.0
ATR0757G026 Amborella trichopoda HOM05D000032 ORTHO05D004313 4.4e-11 71.2 41 82.9
Aqoxy7G00549 Aquilegia oxysepala HOM05D000032 ORTHO05D004313 4.4e-11 71.2 40 82.5
arahy.Tifrunner.gnm1.ann1.U9Y6Z5 Arachis hypogaea HOM05D000032 ORTHO05D004313 4.4e-11 71.2 40 85.0
Eucgr.K00136 Eucalyptus grandis HOM05D000032 ORTHO05D004313 4.4e-11 71.2 40 82.5
Lj5g0013117 Lotus japonicus HOM05D000032 ORTHO05D004313 4.4e-11 71.2 40 85.0
Lalb_Chr01g0008871 Lupinus albus HOM05D000032 ORTHO05D004313 4.4e-11 71.2 40 85.0
Lalb_Chr03g0032991 Lupinus albus HOM05D000032 ORTHO05D004313 4.4e-11 71.2 40 85.0
Lalb_Chr19g0131241 Lupinus albus HOM05D000032 ORTHO05D004313 4.4e-11 71.2 40 85.0
Nn4g26453 Nelumbo nucifera HOM05D000032 ORTHO05D004313 4.4e-11 71.2 40 82.5
Thecc.03G163800 Theobroma cacao HOM05D000032 ORTHO05D004313 4.4e-11 71.2 40 82.5
TPR.G26094 Trifolium pratense HOM05D000032 ORTHO05D004313 4.4e-11 71.2 40 87.5
TWI38G0913 Tripterygium wilfordii HOM05D000032 ORTHO05D004313 4.4e-11 71.2 40 85.0
Aa31LG11G1400 Aethionema arabicum HOM05D000032 ORTHO05D004313 5.7e-11 70.9 40 82.5
AT5G62190 Arabidopsis thaliana HOM05D000032 ORTHO05D004313 5.7e-11 70.9 40 82.5
BcaB07g29792 Brassica carinata HOM05D000032 ORTHO05D004313 5.7e-11 70.9 40 82.5
A02p42170 Brassica napus HOM05D000032 ORTHO05D004313 5.7e-11 70.9 40 82.5
C02p62020 Brassica napus HOM05D000032 ORTHO05D004313 5.7e-11 70.9 40 82.5
BraA02t09146Z Brassica rapa HOM05D000032 ORTHO05D004313 5.7e-11 70.9 40 82.5
Carub.0008s2288 Capsella rubella HOM05D000032 ORTHO05D004313 5.7e-11 70.9 40 82.5
FAN03G3033 Fragaria x ananassa HOM05D000032 ORTHO05D004313 5.7e-11 70.9 40 85.0
FAN03G3419 Fragaria x ananassa HOM05D000032 ORTHO05D004313 5.7e-11 70.9 40 85.0
Gohir.A12G263300 Gossypium hirsutum HOM05D000032 ORTHO05D004313 5.7e-11 70.9 40 82.5
Gorai.008G282800 Gossypium raimondii HOM05D000032 ORTHO05D004313 5.7e-11 70.9 40 82.5
Sp2g25390 Schrenkiella parvula HOM05D000032 ORTHO05D004313 5.7e-11 70.9 40 82.5
TWI39G0408 Tripterygium wilfordii HOM05D000032 ORTHO05D004313 5.7e-11 70.9 40 85.0
Gohir.D12G263800 Gossypium hirsutum HOM05D000032 ORTHO05D004313 7.5e-11 70.5 40 82.5
Actinidia31796 Actinidia chinensis HOM05D000032 ORTHO05D004313 9.8e-11 70.1 40 82.5
MSTRG.118 Avicennia marina HOM05D000032 ORTHO05D004313 1.3e-10 69.7 40 85.0
Manes.06G139200 Manihot esculenta HOM05D000032 ORTHO05D004313 1.3e-10 69.7 40 85.0
Manes.14G031800 Manihot esculenta HOM05D000032 ORTHO05D004313 1.3e-10 69.7 40 82.5
MSTRG.8791 Avicennia marina HOM05D000032 ORTHO05D004313 1.7e-10 69.3 40 82.5
BcaNung01407 Brassica carinata HOM05D000032 ORTHO05D004313 1.7e-10 69.3 40 80.0
Cc02_g03740 Coffea canephora HOM05D000032 ORTHO05D004313 1.7e-10 69.3 40 85.0
CsaV3_5G005540 Cucumis sativus L. HOM05D001244 ORTHO05D004313 1.7e-10 69.3 40 80.0
Migut.F00412 Erythranthe guttata HOM05D000032 ORTHO05D004313 1.7e-10 69.3 40 85.0
arahy.Tifrunner.gnm1.ann1.ZFZQ7Q Arachis hypogaea HOM05D000032 ORTHO05D004313 2.2e-10 68.9 40 82.5
Lj8A35T79 Lonicera japonica HOM05D000032 ORTHO05D004313 2.2e-10 68.9 40 82.5
Sed0013996 Sechium edule HOM05D000032 ORTHO05D004313 2.2e-10 68.9 40 77.5
AagrBONN_evm.TU.Sc2ySwM_117.2717 Anthoceros agrestis HOM05D000032 ORTHO05D004313 2.8e-10 68.6 40 77.5
AL8G39010 Arabidopsis lyrata HOM05D000032 ORTHO05D004313 2.8e-10 68.6 40 80.0
Rhsim09G0194000 Rhododendron simsii HOM05D000032 ORTHO05D004313 2.8e-10 68.6 40 80.0
vmacro09882 Vaccinium macrocarpon HOM05D000032 ORTHO05D004313 3.7e-10 68.2 40 80.0
CDE12G0387 Ceratophyllum demersum HOM05D000032 ORTHO05D004313 4.9e-10 67.8 40 80.0
Rhsim03G0173200 Rhododendron simsii HOM05D000032 ORTHO05D004313 4.9e-10 67.8 40 77.5
THA.LOC104824842 Tarenaya hassleriana HOM05D000032 ORTHO05D004313 4.9e-10 67.8 37 83.8
vmacro06757 Vaccinium macrocarpon HOM05D000032 ORTHO05D004313 4.9e-10 67.8 40 77.5
CARHR275980 Cardamine hirsuta HOM05D000032 ORTHO05D004313 6.3e-10 67.4 40 77.5
DCAR_009438 Daucus carota HOM05D000032 ORTHO05D004313 6.3e-10 67.4 40 80.0
Peaxi162Scf01178g00115 Petunia axillaris HOM05D000032 ORTHO05D004313 6.3e-10 67.4 40 80.0
SGA_v2.0_scaffold303G47877 Striga asiatica HOM05D000032 ORTHO05D004313 6.3e-10 67.4 36 88.9
BcaB05g22362 Brassica carinata HOM05D000032 ORTHO05D021207 8.3e-10 67.0 41 75.6
CSS0014805 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D004313 8.3e-10 67.0 36 83.3
CSS0037420 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D004313 8.3e-10 67.0 36 83.3
Mapoly0021s0161 Marchantia polymorpha HOM05D000032 ORTHO05D004313 8.3e-10 67.0 40 77.5
BcaC03g18134 Brassica carinata HOM05D000032 ORTHO05D004313 1.1e-09 66.6 38 81.6
Nitab4.5_0001341g0060 Nicotiana tabacum HOM05D000032 ORTHO05D004313 1.1e-09 66.6 40 80.0
Nitab4.5_0007841g0010 Nicotiana tabacum HOM05D000032 ORTHO05D004313 1.1e-09 66.6 40 80.0
Os09g0520700 Oryza sativa ssp. japonica HOM05D000032 ORTHO05D004313 1.1e-09 66.6 40 77.5
CAN.G1135.3 Capsicum annuum HOM05D000032 ORTHO05D004313 1.4e-09 66.2 46 69.6
Solyc06g035450.4 Solanum lycopersicum HOM05D000032 ORTHO05D004313 1.4e-09 66.2 40 77.5
Sopen06g011210 Solanum pennellii HOM05D000032 ORTHO05D004313 1.4e-09 66.2 40 77.5
PGSC0003DMG400027958 Solanum tuberosum HOM05D000032 ORTHO05D004313 1.4e-09 66.2 40 77.5
SGA_v2.0_scaffold10G05448 Striga asiatica HOM05D000032 ORTHO05D004313 1.4e-09 66.2 40 82.5
Migut.F01166 Erythranthe guttata HOM05D000032 ORTHO05D004313 1.8e-09 65.9 40 77.5
Sopen03g003010 Solanum pennellii HOM05D000032 ORTHO05D004313 1.8e-09 65.9 40 80.0
Pp3c10_20840 Physcomitrium patens HOM05D000032 ORTHO05D004313 2.4e-09 65.5 40 75.0
Solyc03g007010.4 Solanum lycopersicum HOM05D000032 ORTHO05D004313 2.4e-09 65.5 40 77.5
PGSC0003DMG400031016 Solanum tuberosum HOM05D000032 ORTHO05D004313 2.4e-09 65.5 40 77.5
CAN.G28.16 Capsicum annuum HOM05D000032 ORTHO05D004313 3.1e-09 65.1 40 77.5
MBI04_g19223_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D004313 3.1e-09 65.1 40 75.0
Zm00001eb318770 Zea mays HOM05D000032 ORTHO05D004313 3.1e-09 65.1 40 75.0
Nitab4.5_0006353g0030 Nicotiana tabacum HOM05D000032 ORTHO05D004313 4.1e-09 64.7 40 77.5
Pp3c20_20710 Physcomitrium patens HOM05D000032 ORTHO05D004313 4.1e-09 64.7 41 70.7
Sc25g0000260 Simmondsia chinensis HOM05D000032 ORTHO05D004313 4.1e-09 64.7 41 73.2
AagrBONN_evm.TU.Sc2ySwM_262.1 Anthoceros agrestis HOM05D000032 ORTHO05D021207 5.4e-09 64.3 38 76.3
Sed0020096 Sechium edule HOM05D000032 ORTHO05D004313 5.4e-09 64.3 40 72.5
HPP92_003296 Vanilla planifolia HOM05D000032 ORTHO05D004313 5.4e-09 64.3 41 70.7
Potri.012G131000 Populus trichocarpa HOM05D000032 ORTHO05D004313 7.0e-09 63.9 40 75.0
RcHm_v2.0_Chr5g0065431 Rosa chinensis HOM05D000032 ORTHO05D004313 7.0e-09 63.9 40 75.0
Sabra12G0098600 Salix brachista HOM05D001120 ORTHO05D004313 7.0e-09 63.9 40 75.0
Zm00001eb103030 Zea mays HOM05D000032 ORTHO05D004313 7.0e-09 63.9 40 72.5
Sabra15G0145800 Salix brachista HOM05D000032 ORTHO05D004313 9.2e-09 63.5 40 72.5
Ah.07g208540 Amaranthus hybridus HOM05D000032 ORTHO05D004313 1.2e-08 63.2 36 77.8
RcHm_v2.0_Chr5g0065371 Rosa chinensis HOM05D000032 ORTHO05D004313 1.2e-08 63.2 38 76.3
Hund11790 Selenicereus undatus HOM05D000032 ORTHO05D004313 1.2e-08 63.2 40 77.5
Peaxi162Scf00192g00836 Petunia axillaris HOM05D000032 ORTHO05D004313 1.6e-08 62.8 40 75.0
Nitab4.5_0000072g0160 Nicotiana tabacum HOM05D000032 ORTHO05D004313 2.0e-08 62.4 40 72.5
PSO478G0487 Papaver somniferum HOM05D000032 ORTHO05D004313 2.0e-08 62.4 40 70.0
PSO782G2275 Papaver somniferum HOM05D000032 ORTHO05D004313 2.0e-08 62.4 40 70.0
Potri.015G133400 Populus trichocarpa HOM05D000032 ORTHO05D004313 2.0e-08 62.4 40 75.0
Ah.07g208430 Amaranthus hybridus HOM05D000032 ORTHO05D004313 2.7e-08 62.0 40 72.5
unitig_0.g1165 Utricularia gibba HOM05D000032 ORTHO05D004313 2.7e-08 62.0 38 78.9
HanXRQChr14g0461911 Helianthus annuus HOM05D000032 ORTHO05D004313 3.5e-08 61.6 40 67.5
Lsat_1_v5_gn_2_129840 Lactuca sativa HOM05D000032 ORTHO05D004313 3.5e-08 61.6 40 67.5
Hund04660 Selenicereus undatus HOM05D000032 ORTHO05D004313 3.5e-08 61.6 40 72.5
ECA238G3800 Erigeron canadensis HOM05D000032 ORTHO05D004313 4.5e-08 61.2 40 67.5
HanXRQChr08g0214971 Helianthus annuus HOM05D000032 ORTHO05D004313 5.9e-08 60.8 40 67.5
PRCOL_00007042 Prasinoderma coloniale HOM05D000032 ORTHO05D004313 5.9e-08 60.8 40 65.0
MBI16_g24674_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D004313 7.8e-08 60.5 40 70.0
EL10Ac3g05767 Beta vulgaris HOM05D000032 ORTHO05D004313 1.0e-07 60.1 40 67.5
AUR62021290 Chenopodium quinoa HOM05D000032 ORTHO05D004313 1.7e-07 59.3 40 67.5
CBR_g45654 Chara braunii HOM05D000032 ORTHO05D004313 2.3e-07 58.9 40 65.0
CBR_g45655 Chara braunii HOM05D000032 ORTHO05D004313 2.3e-07 58.9 40 65.0
AUR62016081 Chenopodium quinoa HOM05D000032 ORTHO05D004313 2.9e-07 58.5 40 67.5
ECA233G3543 Erigeron canadensis HOM05D000032 ORTHO05D004313 2.9e-07 58.5 40 67.5
SMO141G0196 Selaginella moellendorffii HOM05D000032 ORTHO05D004313 2.9e-07 58.5 40 65.0
FvH4_3g36510 Fragaria vesca HOM05D000032 ORTHO05D004313 6.6e-07 57.4 40 70.0
FAN11G2441 Fragaria x ananassa HOM05D000032 ORTHO05D004313 6.6e-07 57.4 40 70.0
FAN16G1811 Fragaria x ananassa HOM05D000032 ORTHO05D004313 6.6e-07 57.4 40 70.0
FAN25G1805 Fragaria x ananassa HOM05D000032 ORTHO05D004313 6.6e-07 57.4 40 70.0
BraA03t10057Z Brassica rapa HOM05D000032 ORTHO05D021207 8.6e-07 57.0 40 72.5
FAN21G0640 Fragaria x ananassa HOM05D000032 ORTHO05D004313 1.5e-06 56.2 40 67.5
BcaB07g29791 Brassica carinata HOM05D000032 ORTHO05D015229 2.5e-06 55.5 32 78.1
Cre02.g118300 Chlamydomonas reinhardtii HOM05D000032 ORTHO05D004313 3.3e-06 55.1 40 60.0
Ah.07g208530 Amaranthus hybridus HOM05D000032 ORTHO05D021207 5.6e-06 54.3 34 73.5


User provided reference genes

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