Gene: Lsat_1_v5_gn_2_129840

General Information

Structural Information

  • Species Lactuca sativa
  • Gene Identifier Lsat_1_v5_gn_2_129840
  • Transcript Identifier Lsat_1_v5_gn_2_129840.1
  • Gene Type Coding gene
  • Location Lsat_1_v8_lg_2 : 209436060-209439304 : positive

Gene Family Information

  • ID HOM05D000032
  • #Genes/#Species 5307/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Lsat_1_v5_gn_2_129840.v5
  • pacid 38961233

Descriptions

  • Description PF00270//PF00271//PF08152 - DEAD/DEAH box helicase (DEAD) // Helicase conserved C-terminal domain (Helicase_C) // GUCT (NUC152) domain (GUCT)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process AT5G62190

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IEA
InterProRNA binding
GO:0004386
IEA
InterProhelicase activity
GO:0005524
IEA
InterProATP binding
GO:0003724
ISO
PLAZA Integrative OrthologyRNA helicase activity AT5G62190

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G62190
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT5G62190

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR035979 RNA-binding domain superfamily
IPR001650 Helicase, C-terminal
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR012562 GUCT
IPR011545 DEAD/DEAH box helicase domain
Mapman id Description
35.1 not assigned.annotated