Gene: Sopen03g003010

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen03g003010
  • Transcript Identifier Sopen03g003010.1
  • Gene Type Coding gene
  • Location Spenn-ch03 : 1626642-1631514 : negative

Gene Family Information

  • ID HOM05D000032
  • #Genes/#Species 5307/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen03g003010.1

Descriptions

  • Description DEAD-box ATP-dependent RNA helicase 7 (EC 3.6.1.-) - Spinacia oleracea (Spinach), DEAD/DEAH box RNA helicase PRH75 | PRH75 | FUNCTIONS IN: DEAD/H-box RNA helicase binding, ATP-dependent helicase activity | INVOLVED IN: RNA metabolic process | LOCATED IN: nucleolus, nucleus | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal , RNA helicase, ATP-dependent, DEAD-box, conserved site , GUCT , RNA helicase, DEAD-box type, Q motif , DEAD-like helicase, N-terminal , DNA/RNA helicase, C-terminal , Helicase, superfamily 1/2, ATP-binding domain | BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase (RH3)
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process AT5G62190

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0005524
IEA
InterProATP binding
GO:0003723
IEA
InterProRNA binding
GO:0004386
IEA
InterProhelicase activity
GO:0003724
ISO
PLAZA Integrative OrthologyRNA helicase activity AT5G62190

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G62190
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT5G62190

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001650 Helicase, C-terminal
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR035979 RNA-binding domain superfamily
IPR011545 DEAD/DEAH box helicase domain
IPR012562 GUCT
Mapman id Description
35.1 not assigned.annotated